Cux1 (cut-like homeobox 1) - Rat Genome Database

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Gene: Cux1 (cut-like homeobox 1) Rattus norvegicus
Analyze
Symbol: Cux1
Name: cut-like homeobox 1
RGD ID: 620618
Description: Enables protein-macromolecule adaptor activity. Involved in retrograde transport, vesicle recycling within Golgi. Located in Golgi membrane. Orthologous to human CUX1 (cut like homeobox 1); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CCAAT displacement protein; CDP; CDP2; cut (Drosophila)-like 1; cut-like 1; cut-like 1 (Drosophila); Cutl1; homeobox protein cut-like 1; homeobox protein cux-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Cux1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1225,743,733 - 26,062,497 (+)EnsemblGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl480,269,821 - 80,272,645 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)Ensemblrn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1221,874,658 - 22,194,905 (+)NCBICelera
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Cytogenetic Map12q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (ISO)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dichloromethane  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
herbicide  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lidocaine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methoxychlor  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picloram  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
Tributyltin oxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zebularine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
Golgi apparatus  (IEA,ISO)
Golgi membrane  (IDA,IEA)
neuron projection  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle. Ellis T, etal., Genes Dev 2001 Sep 1;15(17):2307-19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. CUX1: a modulator of tumour aggressiveness in pancreatic neuroendocrine neoplasms. Krug S, etal., Endocr Relat Cancer. 2014;21(6):879-90. doi: 10.1530/ERC-14-0152. Epub 2014 Sep 23.
4. Transcription factor CUTL1 is a negative regulator of drug resistance in gastric cancer. Li T, etal., J Biol Chem. 2013 Feb 8;288(6):4135-47. doi: 10.1074/jbc.M112.345942. Epub 2012 Dec 19.
5. Golgin tethers define subpopulations of COPI vesicles. Malsam J, etal., Science. 2005 Feb 18;307(5712):1095-8.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. CUTL1 induces epithelial-mesenchymal transition in non-small cell lung cancer. Wang J, etal., Oncol Rep. 2017 May;37(5):3068-3074. doi: 10.3892/or.2017.5571. Epub 2017 Apr 11.
12. Isolation of two E-box binding factors that interact with the rat tyrosine hydroxylase enhancer. Yoon SO and Chikaraishi DM, J Biol Chem 1994 Jul 15;269(28):18453-62.
13. 5-Hydroxytryptamine Receptor 1D Aggravates Hepatocellular Carcinoma Progression Through FoxO6 in AKT-Dependent and Independent Manners. Zuo X, etal., Hepatology. 2019 May;69(5):2031-2047. doi: 10.1002/hep.30430. Epub 2019 Mar 10.
Additional References at PubMed
PMID:1363085   PMID:11839809   PMID:15656993   PMID:15994318   PMID:18829740   PMID:18836447   PMID:20473291   PMID:20485671   PMID:20510857   PMID:25100583   PMID:27250217   PMID:27986613  


Genomics

Comparative Map Data
Cux1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1225,743,733 - 26,062,497 (+)EnsemblGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl480,269,821 - 80,272,645 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)Ensemblrn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1221,874,658 - 22,194,905 (+)NCBICelera
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Cytogenetic Map12q12NCBI
CUX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,816,007 - 102,283,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,815,904 - 102,283,958 (+)Ensemblhg38GRCh38
GRCh377101,459,287 - 101,927,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,246,012 - 101,713,970 (+)NCBIBuild 36Build 36hg18NCBI36
Celera796,467,441 - 96,936,259 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef796,049,661 - 96,517,462 (+)NCBIHuRef
CHM1_17101,389,393 - 101,855,391 (+)NCBICHM1_1
T2T-CHM13v2.07103,136,249 - 103,601,363 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,817,571 - 101,284,708 (+)NCBI
Cux1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,276,989 - 136,596,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,276,989 - 136,596,344 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385136,248,135 - 136,567,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,248,135 - 136,567,490 (-)Ensemblmm10GRCm38
MGSCv375136,724,005 - 137,043,301 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365136,532,762 - 136,851,867 (-)NCBIMGSCv36mm8
Celera5133,264,708 - 133,588,225 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.96NCBI
Cux1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,276,959 - 15,638,004 (-)Ensembl
ChiLan1.0NW_00495545615,292,562 - 15,636,835 (-)NCBIChiLan1.0ChiLan1.0
CUX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,827,345 - 120,295,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17168,092,003 - 168,560,300 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,954,599 - 94,432,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17107,191,108 - 107,609,940 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7107,191,124 - 107,609,940 (+)EnsemblpanPan2panpan1.1
CUX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,820,154 - 8,108,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,820,764 - 8,195,631 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha69,514,914 - 9,882,633 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.067,640,261 - 8,004,747 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,640,269 - 8,004,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,624,228 - 7,961,118 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,599,495 - 7,936,098 (-)NCBIUNSW_CanFamBas_1.0
UNSW_CanFamBas_1.067,572,159 - 7,599,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,735,793 - 8,100,353 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cux1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,239,671 - 132,550,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,485,970 - 1,796,070 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,482,606 - 1,781,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,317,140 - 9,669,998 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.139,317,145 - 9,669,999 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,324,555 - 9,427,871 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,901,529 - 11,370,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,937,512 - 11,370,702 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660705,031,645 - 5,502,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cux1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,287,421 - 15,664,077 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474015,289,616 - 15,664,090 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cux1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11617,449,881 - 17,770,317 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cux1
4751 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:490
Count of miRNA genes:212
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000001928, ENSRNOT00000044841, ENSRNOT00000059486, ENSRNOT00000075031
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)122013902826430640Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
D12Got43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,217,854 - 20,218,013 (+)MAPPERmRatBN7.2
Rnor_6.01223,262,102 - 23,262,260NCBIRnor6.0
Rnor_5.01225,262,452 - 25,262,610UniSTSRnor5.0
RGSC_v3.41221,333,262 - 21,333,421RGDRGSC3.4
RGSC_v3.41221,333,263 - 21,333,421UniSTSRGSC3.4
Celera1221,987,007 - 21,987,165UniSTS
RGSC_v3.11221,322,875 - 21,323,033RGD
RH 3.4 Map12301.61UniSTS
RH 3.4 Map12301.61RGD
Cytogenetic Map12q12UniSTS
RH133068  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,117,962 - 20,118,168 (+)MAPPERmRatBN7.2
Rnor_6.01223,161,758 - 23,161,963NCBIRnor6.0
Rnor_5.01225,162,108 - 25,162,313UniSTSRnor5.0
RGSC_v3.41221,233,257 - 21,233,462UniSTSRGSC3.4
Celera1221,885,471 - 21,885,676UniSTS
RH 3.4 Map12294.7UniSTS
Cytogenetic Map12q12UniSTS
RH130111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,409,720 - 20,409,902 (+)MAPPERmRatBN7.2
Rnor_6.01223,453,948 - 23,454,129NCBIRnor6.0
Rnor_5.01225,454,298 - 25,454,479UniSTSRnor5.0
RGSC_v3.41221,525,112 - 21,525,293UniSTSRGSC3.4
Celera1222,178,758 - 22,178,939UniSTS
RH 3.4 Map12298.5UniSTS
Cytogenetic Map12q12UniSTS
BE120355  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81226,044,785 - 26,044,954 (+)Marker Load Pipeline
mRatBN7.21220,408,156 - 20,408,325 (+)MAPPERmRatBN7.2
Rnor_6.01223,452,384 - 23,452,552NCBIRnor6.0
Rnor_5.01225,452,734 - 25,452,902UniSTSRnor5.0
RGSC_v3.41221,523,548 - 21,523,716UniSTSRGSC3.4
Celera1222,177,194 - 22,177,362UniSTS
RH 3.4 Map12299.2UniSTS
Cytogenetic Map12q12UniSTS
BF411168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,337,058 - 20,337,284 (+)MAPPERmRatBN7.2
Rnor_6.01223,381,291 - 23,381,516NCBIRnor6.0
Rnor_5.01225,381,641 - 25,381,866UniSTSRnor5.0
RGSC_v3.41221,452,456 - 21,452,681UniSTSRGSC3.4
Celera1222,106,150 - 22,106,375UniSTS
RH 3.4 Map12299.4UniSTS
Cytogenetic Map12q12UniSTS
BF412746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,288,564 - 20,288,658 (+)MAPPERmRatBN7.2
Rnor_6.01223,332,802 - 23,332,895NCBIRnor6.0
Rnor_5.01225,333,152 - 25,333,245UniSTSRnor5.0
RGSC_v3.41221,403,967 - 21,404,060UniSTSRGSC3.4
Celera1222,057,668 - 22,057,761UniSTS
RH 3.4 Map12297.6UniSTS
Cytogenetic Map12q12UniSTS
AU047743  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,315,016 - 20,315,182 (+)MAPPERmRatBN7.2
Rnor_6.01223,359,247 - 23,359,412NCBIRnor6.0
Rnor_5.01225,359,597 - 25,359,762UniSTSRnor5.0
RGSC_v3.41221,430,412 - 21,430,577UniSTSRGSC3.4
Celera1222,084,106 - 22,084,271UniSTS
Cytogenetic Map12q12UniSTS
RH139585  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,425,376 - 20,425,583 (+)MAPPERmRatBN7.2
Rnor_6.01223,469,604 - 23,469,810NCBIRnor6.0
Rnor_5.01225,469,954 - 25,470,160UniSTSRnor5.0
RGSC_v3.41221,540,768 - 21,540,974UniSTSRGSC3.4
Celera1222,194,414 - 22,194,620UniSTS
Cytogenetic Map12q12UniSTS
AU049974  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,175,950 - 20,176,158 (+)MAPPERmRatBN7.2
Rnor_6.01223,220,199 - 23,220,406NCBIRnor6.0
Rnor_5.01225,220,549 - 25,220,756UniSTSRnor5.0
RGSC_v3.41221,291,342 - 21,291,549UniSTSRGSC3.4
Celera1221,943,391 - 21,943,598UniSTS
Cytogenetic Map12q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001415774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001070410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_347163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U09229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044841   ⟹   ENSRNOP00000040645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1225,744,951 - 26,062,495 (+)Ensembl
mRatBN7.2 Ensembl1220,108,512 - 20,425,866 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000059486   ⟹   ENSRNOP00000056243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1225,743,971 - 26,045,756 (+)Ensembl
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097976   ⟹   ENSRNOP00000089950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1225,743,971 - 26,045,756 (+)Ensembl
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112152   ⟹   ENSRNOP00000080302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1225,745,382 - 26,038,165 (+)Ensembl
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118907   ⟹   ENSRNOP00000080823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,269,821 - 80,272,645 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000149512   ⟹   ENSRNOP00000103400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1225,743,733 - 26,062,497 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156078   ⟹   ENSRNOP00000104247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1225,745,382 - 26,038,165 (+)Ensembl
RefSeq Acc Id: NM_001415774   ⟹   NP_001402703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,999 - 26,062,497 (+)NCBI
mRatBN7.21220,107,339 - 20,425,868 (+)NCBI
RefSeq Acc Id: NM_001415775   ⟹   NP_001402704
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,999 - 26,062,497 (+)NCBI
mRatBN7.21220,107,339 - 20,425,868 (+)NCBI
RefSeq Acc Id: NM_053860   ⟹   NP_446312
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,971 - 26,045,756 (+)NCBI
mRatBN7.21220,107,311 - 20,409,127 (+)NCBI
RefSeq Acc Id: XM_003751160   ⟹   XP_003751208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
mRatBN7.21220,107,062 - 20,409,127 (+)NCBI
Rnor_6.01223,150,886 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003751161   ⟹   XP_003751209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
mRatBN7.21220,107,063 - 20,409,127 (+)NCBI
Rnor_6.01223,150,888 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249202   ⟹   XP_006249264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,933 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249204   ⟹   XP_006249266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,936 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769166   ⟹   XP_008767388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,940 - 26,062,497 (+)NCBI
mRatBN7.21220,108,619 - 20,425,868 (+)NCBI
Rnor_6.01223,152,420 - 23,470,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769167   ⟹   XP_008767389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,914 - 26,062,497 (+)NCBI
mRatBN7.21220,108,619 - 20,425,868 (+)NCBI
Rnor_6.01223,152,420 - 23,470,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089023   ⟹   XP_038944951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,935 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
RefSeq Acc Id: XM_063270994   ⟹   XP_063127064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,935 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270995   ⟹   XP_063127065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,931 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270996   ⟹   XP_063127066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,728,658 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270997   ⟹   XP_063127067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270998   ⟹   XP_063127068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,728,393 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271000   ⟹   XP_063127070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271001   ⟹   XP_063127071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,706 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271002   ⟹   XP_063127072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271003   ⟹   XP_063127073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,706 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271004   ⟹   XP_063127074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,934 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271005   ⟹   XP_063127075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271006   ⟹   XP_063127076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271008   ⟹   XP_063127078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,875,403 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271009   ⟹   XP_063127079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,871 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_063271010   ⟹   XP_063127080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,715 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_063271011   ⟹   XP_063127081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,714 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_347163   ⟹   XP_347164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,934 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
RGSC_v3.41221,223,919 - 21,516,938 (+)RGD
Sequence:
RefSeq Acc Id: XR_010056362
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,745 - 26,060,312 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001402703 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402704 (Get FASTA)   NCBI Sequence Viewer  
  NP_446312 (Get FASTA)   NCBI Sequence Viewer  
  XP_003751208 (Get FASTA)   NCBI Sequence Viewer  
  XP_003751209 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249264 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249266 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767388 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767389 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127065 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127066 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127068 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127070 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127071 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127072 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127073 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127074 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127075 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127076 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127078 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127079 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127081 (Get FASTA)   NCBI Sequence Viewer  
  XP_347164 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21123 (Get FASTA)   NCBI Sequence Viewer  
  EDM13310 (Get FASTA)   NCBI Sequence Viewer  
  EDM13311 (Get FASTA)   NCBI Sequence Viewer  
  EDM13312 (Get FASTA)   NCBI Sequence Viewer  
  EDM13313 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040645
  ENSRNOP00000056243
  ENSRNOP00000056243.3
  ENSRNOP00000080302
  ENSRNOP00000089950
  ENSRNOP00000103400
  ENSRNOP00000104247
GenBank Protein P53565 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_347164   ⟸   XM_347163
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003751208   ⟸   XM_003751160
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G4D0 (UniProtKB/TrEMBL),   A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003751209   ⟸   XM_003751161
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249264   ⟸   XM_006249202
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249266   ⟸   XM_006249204
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767388   ⟸   XM_008769166
- Peptide Label: isoform X20
- UniProtKB: F1M8J7 (UniProtKB/TrEMBL),   A0A8I5ZR58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767389   ⟸   XM_008769167
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056243   ⟸   ENSRNOT00000059486
RefSeq Acc Id: NP_446312   ⟸   NM_053860
- Peptide Label: isoform 1
- UniProtKB: P53565 (UniProtKB/Swiss-Prot),   F1LRC5 (UniProtKB/Swiss-Prot),   A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944951   ⟸   XM_039089023
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080302   ⟸   ENSRNOT00000112152
Ensembl Acc Id: ENSRNOP00000040645   ⟸   ENSRNOT00000044841
Ensembl Acc Id: ENSRNOP00000089950   ⟸   ENSRNOT00000097976
RefSeq Acc Id: NP_001402704   ⟸   NM_001415775
- Peptide Label: isoform 3
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402703   ⟸   NM_001415774
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127068   ⟸   XM_063270998
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127066   ⟸   XM_063270996
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127071   ⟸   XM_063271001
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127073   ⟸   XM_063271003
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127067   ⟸   XM_063270997
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127075   ⟸   XM_063271005
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127076   ⟸   XM_063271006
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127070   ⟸   XM_063271000
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127072   ⟸   XM_063271002
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127081   ⟸   XM_063271011
- Peptide Label: isoform X24
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127080   ⟸   XM_063271010
- Peptide Label: isoform X23
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127079   ⟸   XM_063271009
- Peptide Label: isoform X22
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127065   ⟸   XM_063270995
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127074   ⟸   XM_063271004
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127064   ⟸   XM_063270994
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127078   ⟸   XM_063271008
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080823   ⟸   ENSRNOT00000118907
Ensembl Acc Id: ENSRNOP00000103400   ⟸   ENSRNOT00000149512
Ensembl Acc Id: ENSRNOP00000104247   ⟸   ENSRNOT00000156078
Protein Domains
CASP C-terminal   CUT   Cux N-terminal   Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8J7-F1-model_v2 AlphaFold F1M8J7 1-192 view protein structure
AF-P53565-F1-model_v2 AlphaFold P53565 1-1504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698540
Promoter ID:EPDNEW_R9059
Type:initiation region
Name:Cux1_1
Description:cut-like homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,151,157 - 23,151,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620618 AgrOrtholog
BioCyc Gene G2FUF-19659 BioCyc
Ensembl Genes ENSRNOG00000001424 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000065301 Ensembl
Ensembl Transcript ENSRNOT00000044841 ENTREZGENE
  ENSRNOT00000059486 ENTREZGENE
  ENSRNOT00000059486.6 UniProtKB/Swiss-Prot
  ENSRNOT00000097976 ENTREZGENE
  ENSRNOT00000112152 ENTREZGENE
  ENSRNOT00000149512 ENTREZGENE
  ENSRNOT00000156078 ENTREZGENE
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot
  Homeodomain-like UniProtKB/Swiss-Prot
InterPro CUT_dom UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_CS UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 116639 ENTREZGENE
PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED UniProtKB/Swiss-Prot
  HOMEOBOX PROTEIN CUT-LIKE 1 UniProtKB/Swiss-Prot
Pfam CUT UniProtKB/Swiss-Prot
  CUX1_N UniProtKB/Swiss-Prot
  Homeodomain UniProtKB/Swiss-Prot
PhenoGen Cux1 PhenoGen
PROSITE CUT UniProtKB/Swiss-Prot
  HOMEOBOX_1 UniProtKB/Swiss-Prot
  HOMEOBOX_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001424 RatGTEx
  ENSRNOG00000065301 RatGTEx
SMART CUT UniProtKB/Swiss-Prot
  HOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
  SSF47413 UniProtKB/Swiss-Prot
UniProt A0A8I5ZR58 ENTREZGENE
  A0A8I6AM13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G4D0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LL31_RAT UniProtKB/TrEMBL
  A0ABK0LQF9_RAT UniProtKB/TrEMBL
  CUX1_RAT UniProtKB/Swiss-Prot
  F1LRC5 ENTREZGENE
  F1M8J7 ENTREZGENE, UniProtKB/TrEMBL
  P53565 ENTREZGENE
UniProt Secondary F1LRC5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Cux1  cut-like homeobox 1  Cutl1  cut-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cutl1  cut-like 1 (Drosophila)    cut (Drosophila)-like 1  Name updated 1299863 APPROVED
2002-08-07 Cutl1  cut (Drosophila)-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL