Cux1 (cut-like homeobox 1) - Rat Genome Database

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Gene: Cux1 (cut-like homeobox 1) Mus musculus
Analyze
Symbol: Cux1
Name: cut-like homeobox 1
RGD ID: 733203
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and chromatin binding activity. Involved in positive regulation of dendrite morphogenesis. Acts upstream of or within several processes, including inner ear auditory receptor cell differentiation; lung development; and negative regulation of transcription by RNA polymerase II. Located in cytoplasm; neuron projection; and nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human CUX1 (cut like homeobox 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA407197; CCAAT displacement protein; CD; CDP; cut-like 1; Cutl; Cutl1; Cux; Cux-1; Cux/CDP homeoprotein; homeobox protein cut-like 1; homeobox protein cux-1; KIAA4047; MGC102214; mKIAA4047; Phox2; protein CASP
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,276,989 - 136,596,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,276,989 - 136,596,344 (-)EnsemblGRCm39 Ensembl
GRCm385136,248,135 - 136,567,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,248,135 - 136,567,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv375136,724,005 - 137,043,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,532,762 - 136,851,867 (-)NCBIMGSCv36mm8
Celera5133,264,708 - 133,588,225 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-tribromophenol  (ISO)
2-butoxyethanol  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumarin  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dichloromethane  (EXP)
dorsomorphin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
glycidyl methacrylate  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
herbicide  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lead(0)  (EXP)
lidocaine  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
picloram  (ISO)
pirinixic acid  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
Soman  (ISO)
succimer  (EXP)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
topotecan  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
troglitazone  (EXP)
tungsten  (EXP)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zebularine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
Golgi apparatus  (ISO)
Golgi membrane  (ISO)
membrane  (IEA)
neuron projection  (IDA)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal alveolocapillary membrane morphology  (IAGP)
abnormal bone structure  (IAGP)
abnormal coat/ hair morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle orientation  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung morphology  (IAGP)
abnormal maternal behavior  (IAGP)
abnormal myelopoiesis  (IAGP)
abnormal pulmonary alveolar duct morphology  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal tumor necrosis factor level  (IAGP)
absent auchene hairs  (IAGP)
absent awl hair  (IAGP)
absent guard hair  (IAGP)
absent hair follicle inner root sheath  (IAGP)
absent zigzag hairs  (IAGP)
alopecia  (IAGP)
cachexia  (IAGP)
curly vibrissae  (IAGP)
cyanosis  (IAGP)
darkened coat color  (IAGP)
decreased B cell number  (IAGP)
decreased body size  (IAGP)
decreased circulating testosterone level  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased thymocyte number  (IAGP)
decreased total body fat amount  (IAGP)
enlarged hair follicles  (IAGP)
enlarged kidney  (IAGP)
increased blood urea nitrogen level  (IAGP)
increased hair follicle number  (IAGP)
increased kidney weight  (IAGP)
increased neuron number  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
kidney cyst  (IAGP)
kinked vibrissae  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
reduced fertility  (IAGP)
reduced male fertility  (IAGP)
respiratory failure  (IAGP)
rhinitis  (IAGP)
short vibrissae  (IAGP)
small thymus  (IAGP)
sparse hair  (IAGP)
thymus cortex hypoplasia  (IAGP)
thymus hypoplasia  (IAGP)
wavy vibrissae  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle. Ellis T, etal., Genes Dev 2001 Sep 1;15(17):2307-19.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. CUX1: a modulator of tumour aggressiveness in pancreatic neuroendocrine neoplasms. Krug S, etal., Endocr Relat Cancer. 2014;21(6):879-90. doi: 10.1530/ERC-14-0152. Epub 2014 Sep 23.
5. Transcription factor CUTL1 is a negative regulator of drug resistance in gastric cancer. Li T, etal., J Biol Chem. 2013 Feb 8;288(6):4135-47. doi: 10.1074/jbc.M112.345942. Epub 2012 Dec 19.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Fine-scale comparative mapping of the human 7q11.23 region and the orthologous region on mouse chromosome 5G: the low-copy repeats that flank the Williams-Beuren syndrome deletion arose at breakpoint sites of an evolutionary inversion(s). Valero MC, etal., Genomics 2000 Oct 1;69(1):1-13.
13. CUTL1 induces epithelial-mesenchymal transition in non-small cell lung cancer. Wang J, etal., Oncol Rep. 2017 May;37(5):3068-3074. doi: 10.3892/or.2017.5571. Epub 2017 Apr 11.
14. 5-Hydroxytryptamine Receptor 1D Aggravates Hepatocellular Carcinoma Progression Through FoxO6 in AKT-Dependent and Independent Manners. Zuo X, etal., Hepatology. 2019 May;69(5):2031-2047. doi: 10.1002/hep.30430. Epub 2019 Mar 10.
Additional References at PubMed
PMID:1363085   PMID:7910552   PMID:8798433   PMID:8816446   PMID:8840273   PMID:8879483   PMID:9045875   PMID:9332351   PMID:9698457   PMID:9858552   PMID:10349636   PMID:10512203  
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PMID:12631340   PMID:12904583   PMID:14610273   PMID:14660441   PMID:14681479   PMID:15142957   PMID:15143175   PMID:15229646   PMID:15377665   PMID:15452856   PMID:15473967   PMID:15489334  
PMID:15498767   PMID:15499562   PMID:15656993   PMID:15747579   PMID:15782199   PMID:15812824   PMID:15840001   PMID:15994318   PMID:16081423   PMID:16141072   PMID:16141073   PMID:16162939  
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PMID:37540708   PMID:37610874   PMID:37612280   PMID:37644171   PMID:37665322   PMID:37758766   PMID:37900274   PMID:37995181   PMID:38019906   PMID:38020907  


Genomics

Comparative Map Data
Cux1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,276,989 - 136,596,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,276,989 - 136,596,344 (-)EnsemblGRCm39 Ensembl
GRCm385136,248,135 - 136,567,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,248,135 - 136,567,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv375136,724,005 - 137,043,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,532,762 - 136,851,867 (-)NCBIMGSCv36mm8
Celera5133,264,708 - 133,588,225 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.96NCBI
CUX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,816,007 - 102,283,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,815,904 - 102,283,958 (+)EnsemblGRCh38hg38GRCh38
GRCh377101,459,287 - 101,927,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,246,012 - 101,713,970 (+)NCBINCBI36Build 36hg18NCBI36
Celera796,467,441 - 96,936,259 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef796,049,661 - 96,517,462 (+)NCBIHuRef
CHM1_17101,389,393 - 101,855,391 (+)NCBICHM1_1
T2T-CHM13v2.07103,136,249 - 103,601,363 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,817,571 - 101,284,708 (+)NCBI
Cux1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Celera1221,874,658 - 22,194,905 (+)NCBICelera
Cytogenetic Map12q12NCBI
Cux1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,276,959 - 15,638,004 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545615,292,562 - 15,636,835 (-)NCBIChiLan1.0ChiLan1.0
CUX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,827,345 - 120,295,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17168,092,003 - 168,560,300 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,954,599 - 94,432,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17107,191,108 - 107,609,940 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7107,191,124 - 107,609,940 (+)Ensemblpanpan1.1panPan2
CUX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,820,154 - 8,108,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,820,764 - 8,195,631 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,514,914 - 9,882,633 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.067,640,261 - 8,004,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,640,269 - 8,004,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,624,228 - 7,961,118 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,599,495 - 7,936,098 (-)NCBIUNSW_CanFamBas_1.0
UNSW_CanFamBas_1.067,572,159 - 7,599,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,735,793 - 8,100,353 (-)NCBIUU_Cfam_GSD_1.0
Cux1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,239,671 - 132,550,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,485,970 - 1,796,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,482,606 - 1,781,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,317,140 - 9,669,998 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.139,317,145 - 9,669,999 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,324,555 - 9,427,871 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,901,529 - 11,370,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,937,512 - 11,370,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660705,031,645 - 5,502,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cux1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,287,421 - 15,664,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,289,616 - 15,664,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cux1
7810 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8181
Count of miRNA genes:997
Interacting mature miRNAs:1521
Transcripts:ENSMUST00000004097, ENSMUST00000163906, ENSMUST00000175918, ENSMUST00000175975, ENSMUST00000175998, ENSMUST00000176172, ENSMUST00000176216, ENSMUST00000176423, ENSMUST00000176486, ENSMUST00000176501, ENSMUST00000176745, ENSMUST00000176778, ENSMUST00000177297, ENSMUST00000177305, ENSMUST00000177414
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse

Markers in Region
D5Mit265  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385136,325,395 - 136,325,533UniSTSGRCm38
MGSCv375136,801,265 - 136,801,403UniSTSGRCm37
Celera5133,342,811 - 133,342,949UniSTS
Cytogenetic Map5G2UniSTS
cM Map578.0UniSTS
Whitehead Genetic566.7UniSTS
Whitehead_YAC5 UniSTS
RH125658  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385136,248,203 - 136,248,452UniSTSGRCm38
MGSCv375136,724,073 - 136,724,322UniSTSGRCm37
Celera5133,264,776 - 133,265,025UniSTS
Cytogenetic Map5G2UniSTS
cM Map578.0UniSTS
Whitehead/MRC_RH51647.18UniSTS
BE120355  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385136,267,219 - 136,267,391UniSTSGRCm38
MGSCv375136,743,089 - 136,743,261UniSTSGRCm37
Celera5133,283,711 - 133,283,883UniSTS
Cytogenetic Map5G2UniSTS
cM Map578.0UniSTS
Cutl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map578.0UniSTS
PMC133930P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385136,312,661 - 136,312,930UniSTSGRCm38
MGSCv375136,788,531 - 136,788,800UniSTSGRCm37
Celera5133,330,079 - 133,330,348UniSTS
Cytogenetic Map5G2UniSTS
cM Map578.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC080158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC083890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF004225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY037807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM944198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP762606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX522962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA317682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ177481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ561634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ716569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ725543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U46683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U46684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U66249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U68542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000004097   ⟹   ENSMUSP00000004097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,295,269 - 136,596,299 (-)Ensembl
GRCm38.p6 Ensembl5136,266,415 - 136,567,445 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,303,347 - 136,331,375 (-)Ensembl
GRCm38.p6 Ensembl5136,274,493 - 136,302,521 (-)Ensembl
RefSeq Acc Id: ENSMUST00000175918   ⟹   ENSMUSP00000135606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,277,364 - 136,596,132 (-)Ensembl
GRCm38.p6 Ensembl5136,248,510 - 136,567,278 (-)Ensembl
RefSeq Acc Id: ENSMUST00000175975   ⟹   ENSMUSP00000135223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,297,221 - 136,596,100 (-)Ensembl
GRCm38.p6 Ensembl5136,268,367 - 136,567,246 (-)Ensembl
RefSeq Acc Id: ENSMUST00000175998   ⟹   ENSMUSP00000135816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,276,989 - 136,388,872 (-)Ensembl
GRCm38.p6 Ensembl5136,248,135 - 136,360,018 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176172   ⟹   ENSMUSP00000135086
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,303,340 - 136,594,286 (-)Ensembl
GRCm38.p6 Ensembl5136,274,486 - 136,565,432 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176216   ⟹   ENSMUSP00000135054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,276,989 - 136,596,102 (-)Ensembl
GRCm38.p6 Ensembl5136,248,135 - 136,567,248 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176423   ⟹   ENSMUSP00000135036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,342,088 - 136,392,149 (-)Ensembl
GRCm38.p6 Ensembl5136,313,234 - 136,363,295 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176486   ⟹   ENSMUSP00000135370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,302,924 - 136,402,202 (-)Ensembl
GRCm38.p6 Ensembl5136,274,070 - 136,373,348 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,391,149 - 136,596,106 (-)Ensembl
GRCm38.p6 Ensembl5136,362,295 - 136,567,252 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176745   ⟹   ENSMUSP00000135512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,276,989 - 136,596,118 (-)Ensembl
GRCm38.p6 Ensembl5136,248,135 - 136,567,264 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176778   ⟹   ENSMUSP00000135892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,303,309 - 136,595,205 (-)Ensembl
GRCm38.p6 Ensembl5136,274,455 - 136,566,351 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177297   ⟹   ENSMUSP00000134819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,279,381 - 136,596,117 (-)Ensembl
GRCm38.p6 Ensembl5136,250,527 - 136,567,263 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5136,511,729 - 136,596,344 (-)Ensembl
GRCm38.p6 Ensembl5136,482,875 - 136,567,490 (-)Ensembl
RefSeq Acc Id: NM_001291233   ⟹   NP_001278162
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,595,224 (-)NCBI
GRCm385136,266,410 - 136,565,981 (-)NCBI
Celera5133,264,708 - 133,588,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291234   ⟹   NP_001278163
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,596,117 (-)NCBI
GRCm385136,266,410 - 136,567,490 (-)NCBI
Celera5133,264,708 - 133,588,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291238   ⟹   NP_001278167
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,276,989 - 136,596,117 (-)NCBI
GRCm385136,248,135 - 136,567,490 (-)NCBI
Celera5133,264,708 - 133,588,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291239   ⟹   NP_001278168
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,276,989 - 136,595,224 (-)NCBI
GRCm385136,248,135 - 136,565,981 (-)NCBI
Celera5133,264,708 - 133,588,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291240   ⟹   NP_001278169
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,276,989 - 136,595,224 (-)NCBI
GRCm385136,248,135 - 136,565,981 (-)NCBI
Celera5133,264,708 - 133,588,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001405079   ⟹   NP_001392008
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,595,224 (-)NCBI
RefSeq Acc Id: NM_001405081   ⟹   NP_001392010
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,596,117 (-)NCBI
RefSeq Acc Id: NM_001405082   ⟹   NP_001392011
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,596,117 (-)NCBI
RefSeq Acc Id: NM_001405083   ⟹   NP_001392012
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,596,117 (-)NCBI
RefSeq Acc Id: NM_001405084   ⟹   NP_001392013
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,596,117 (-)NCBI
RefSeq Acc Id: NM_001405085   ⟹   NP_001392014
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,276,989 - 136,595,224 (-)NCBI
RefSeq Acc Id: NM_001405086   ⟹   NP_001392015
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,276,989 - 136,596,117 (-)NCBI
RefSeq Acc Id: NM_009986   ⟹   NP_034116
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,267 - 136,596,117 (-)NCBI
GRCm385136,266,410 - 136,567,490 (-)NCBI
MGSCv375136,724,005 - 137,043,301 (-)RGD
Celera5133,264,708 - 133,588,225 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_198602   ⟹   NP_941004
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,276,989 - 136,596,117 (-)NCBI
GRCm385136,248,135 - 136,567,490 (-)NCBI
MGSCv375136,724,005 - 137,043,301 (-)RGD
Celera5133,264,708 - 133,588,225 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504354   ⟹   XP_006504417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,013 (-)NCBI
GRCm385136,266,410 - 136,567,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320654   ⟹   XP_017176143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,014 (-)NCBI
GRCm385136,266,410 - 136,567,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254106   ⟹   XP_030109966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,014 (-)NCBI
GRCm385136,266,410 - 136,567,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254107   ⟹   XP_030109967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,013 (-)NCBI
GRCm385136,266,410 - 136,567,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254108   ⟹   XP_030109968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,429 (-)NCBI
GRCm385136,266,410 - 136,567,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254110   ⟹   XP_030109970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,429 (-)NCBI
GRCm385136,266,410 - 136,567,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254113   ⟹   XP_030109973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,429 (-)NCBI
GRCm385136,266,410 - 136,567,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164773   ⟹   XP_036020666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395136,295,264 - 136,596,429 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001278162 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278163 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278167 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278168 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278169 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392008 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392010 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392011 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392012 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392013 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392014 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392015 (Get FASTA)   NCBI Sequence Viewer  
  NP_034116 (Get FASTA)   NCBI Sequence Viewer  
  NP_941004 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504417 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176143 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109966 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109967 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109968 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109970 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109973 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020666 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB07138 (Get FASTA)   NCBI Sequence Viewer  
  AAB08430 (Get FASTA)   NCBI Sequence Viewer  
  AAB41146 (Get FASTA)   NCBI Sequence Viewer  
  AAC52775 (Get FASTA)   NCBI Sequence Viewer  
  AAD12485 (Get FASTA)   NCBI Sequence Viewer  
  AAH14289 (Get FASTA)   NCBI Sequence Viewer  
  AAH54370 (Get FASTA)   NCBI Sequence Viewer  
  AAH79570 (Get FASTA)   NCBI Sequence Viewer  
  AAH90847 (Get FASTA)   NCBI Sequence Viewer  
  AAK59986 (Get FASTA)   NCBI Sequence Viewer  
  BAA95078 (Get FASTA)   NCBI Sequence Viewer  
  BAB24579 (Get FASTA)   NCBI Sequence Viewer  
  BAD90358 (Get FASTA)   NCBI Sequence Viewer  
  BAE20769 (Get FASTA)   NCBI Sequence Viewer  
  BAE26142 (Get FASTA)   NCBI Sequence Viewer  
  CAA52922 (Get FASTA)   NCBI Sequence Viewer  
  EDL19308 (Get FASTA)   NCBI Sequence Viewer  
  EDL19309 (Get FASTA)   NCBI Sequence Viewer  
  EDL19310 (Get FASTA)   NCBI Sequence Viewer  
  EDL19311 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000004097
  ENSMUSP00000004097.9
  ENSMUSP00000134819.2
  ENSMUSP00000135036.3
  ENSMUSP00000135054
  ENSMUSP00000135054.2
  ENSMUSP00000135086
  ENSMUSP00000135086.2
  ENSMUSP00000135223
  ENSMUSP00000135223.3
  ENSMUSP00000135370
  ENSMUSP00000135370.3
  ENSMUSP00000135512
  ENSMUSP00000135512.2
  ENSMUSP00000135606.3
  ENSMUSP00000135816.3
  ENSMUSP00000135892
  ENSMUSP00000135892.2
GenBank Protein P53564 (Get FASTA)   NCBI Sequence Viewer  
  P70403 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_941004   ⟸   NM_198602
- Peptide Label: isoform b
- UniProtKB: Q91WN6 (UniProtKB/Swiss-Prot),   Q7TQJ4 (UniProtKB/Swiss-Prot),   P70403 (UniProtKB/Swiss-Prot),   H3BKT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_034116   ⟸   NM_009986
- Peptide Label: isoform a
- UniProtKB: E9QKE9 (UniProtKB/TrEMBL),   Q5BL05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504417   ⟸   XM_006504354
- Peptide Label: isoform X8
- UniProtKB: H3BLS0 (UniProtKB/TrEMBL),   Q5BL05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278167   ⟸   NM_001291238
- Peptide Label: isoform e
- UniProtKB: Q91WN6 (UniProtKB/Swiss-Prot),   Q7TQJ4 (UniProtKB/Swiss-Prot),   P70403 (UniProtKB/Swiss-Prot),   H3BJN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278168   ⟸   NM_001291239
- Peptide Label: isoform f
- UniProtKB: Q9JJB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278169   ⟸   NM_001291240
- Peptide Label: isoform g
- UniProtKB: Q9JJB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278163   ⟸   NM_001291234
- Peptide Label: isoform d
- UniProtKB: Q91ZD2 (UniProtKB/Swiss-Prot),   Q571L6 (UniProtKB/Swiss-Prot),   P70301 (UniProtKB/Swiss-Prot),   O08994 (UniProtKB/Swiss-Prot),   P53564 (UniProtKB/Swiss-Prot),   H3BK24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278162   ⟸   NM_001291233
- Peptide Label: isoform c
- UniProtKB: H3BJQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176143   ⟸   XM_017320654
- Peptide Label: isoform X1
- UniProtKB: H3BJQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109973   ⟸   XM_030254113
- Peptide Label: isoform X12
- UniProtKB: Q5BL05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109970   ⟸   XM_030254110
- Peptide Label: isoform X10
- UniProtKB: Q5BL05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109968   ⟸   XM_030254108
- Peptide Label: isoform X5
- UniProtKB: H3BJQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109966   ⟸   XM_030254106
- Peptide Label: isoform X2
- UniProtKB: H3BJQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109967   ⟸   XM_030254107
- Peptide Label: isoform X4
- UniProtKB: Q91ZD2 (UniProtKB/Swiss-Prot),   Q571L6 (UniProtKB/Swiss-Prot),   P70301 (UniProtKB/Swiss-Prot),   P53564 (UniProtKB/Swiss-Prot),   O08994 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000134819   ⟸   ENSMUST00000177297
RefSeq Acc Id: ENSMUSP00000135892   ⟸   ENSMUST00000176778
RefSeq Acc Id: ENSMUSP00000135512   ⟸   ENSMUST00000176745
RefSeq Acc Id: ENSMUSP00000135036   ⟸   ENSMUST00000176423
RefSeq Acc Id: ENSMUSP00000135370   ⟸   ENSMUST00000176486
RefSeq Acc Id: ENSMUSP00000135086   ⟸   ENSMUST00000176172
RefSeq Acc Id: ENSMUSP00000135054   ⟸   ENSMUST00000176216
RefSeq Acc Id: ENSMUSP00000135606   ⟸   ENSMUST00000175918
RefSeq Acc Id: ENSMUSP00000135816   ⟸   ENSMUST00000175998
RefSeq Acc Id: ENSMUSP00000135223   ⟸   ENSMUST00000175975
RefSeq Acc Id: ENSMUSP00000004097   ⟸   ENSMUST00000004097
RefSeq Acc Id: XP_036020666   ⟸   XM_036164773
- Peptide Label: isoform X9
- UniProtKB: H3BJQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001392015   ⟸   NM_001405086
- Peptide Label: isoform n
RefSeq Acc Id: NP_001392014   ⟸   NM_001405085
- Peptide Label: isoform m
RefSeq Acc Id: NP_001392013   ⟸   NM_001405084
- Peptide Label: isoform l
RefSeq Acc Id: NP_001392012   ⟸   NM_001405083
- Peptide Label: isoform k
RefSeq Acc Id: NP_001392011   ⟸   NM_001405082
- Peptide Label: isoform j
RefSeq Acc Id: NP_001392010   ⟸   NM_001405081
- Peptide Label: isoform i
RefSeq Acc Id: NP_001392008   ⟸   NM_001405079
- Peptide Label: isoform h
Protein Domains
CASP C-terminal   CUT   Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P53564-F1-model_v2 AlphaFold P53564 1-1515 view protein structure

Promoters
RGD ID:6888392
Promoter ID:EPDNEW_M7638
Type:initiation region
Name:Cux1_1
Description:Mus musculus cut-like homeobox 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7639  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385136,567,263 - 136,567,323EPDNEW
RGD ID:6888376
Promoter ID:EPDNEW_M7639
Type:initiation region
Name:Cux1_2
Description:Mus musculus cut-like homeobox 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7638  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385136,567,533 - 136,567,593EPDNEW
RGD ID:6847926
Promoter ID:MM_ACW:39818
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:CUTL1.MSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365136,733,416 - 136,733,916 (-)MPROMDB
RGD ID:6837334
Promoter ID:MM_KWN:44419
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:ENSMUST00000065599,   UC009AAJ.1,   UC009AAK.1,   UC009AAQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365137,041,576 - 137,042,357 (-)MPROMDB
RGD ID:6837339
Promoter ID:MM_KWN:44420
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung
Transcripts:NM_009986,   UC009AAL.1,   UC009AAM.1,   UC009AAS.1,   UC009AAT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365137,042,781 - 137,043,281 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88568 AgrOrtholog
Ensembl Genes ENSMUSG00000029705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004097 ENTREZGENE
  ENSMUST00000004097.16 UniProtKB/TrEMBL
  ENSMUST00000175918.9 UniProtKB/TrEMBL
  ENSMUST00000175975 ENTREZGENE
  ENSMUST00000175975.9 UniProtKB/TrEMBL
  ENSMUST00000175998.8 UniProtKB/TrEMBL
  ENSMUST00000176172 ENTREZGENE
  ENSMUST00000176172.8 UniProtKB/TrEMBL
  ENSMUST00000176216 ENTREZGENE
  ENSMUST00000176216.9 UniProtKB/TrEMBL
  ENSMUST00000176423.2 UniProtKB/TrEMBL
  ENSMUST00000176486 ENTREZGENE
  ENSMUST00000176486.9 UniProtKB/TrEMBL
  ENSMUST00000176745 ENTREZGENE
  ENSMUST00000176745.8 UniProtKB/TrEMBL
  ENSMUST00000176778 ENTREZGENE
  ENSMUST00000176778.8 UniProtKB/TrEMBL
  ENSMUST00000177297.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.1700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CASP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CUT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88568 ENTREZGENE
NCBI Gene 13047 ENTREZGENE
PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX PROTEIN CUT-LIKE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN CASP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CASP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CUT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cux1 PhenoGen
PROSITE CUT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CUT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CASP_MOUSE UniProtKB/Swiss-Prot
  CUX1_MOUSE UniProtKB/Swiss-Prot
  E9QKE9 ENTREZGENE, UniProtKB/TrEMBL
  H3BJ26_MOUSE UniProtKB/TrEMBL
  H3BJL7_MOUSE UniProtKB/TrEMBL
  H3BJN3 ENTREZGENE, UniProtKB/TrEMBL
  H3BJQ9 ENTREZGENE, UniProtKB/TrEMBL
  H3BK24 ENTREZGENE, UniProtKB/TrEMBL
  H3BKF6_MOUSE UniProtKB/TrEMBL
  H3BKT0 ENTREZGENE, UniProtKB/TrEMBL
  H3BL09_MOUSE UniProtKB/TrEMBL
  H3BLJ7_MOUSE UniProtKB/TrEMBL
  H3BLS0 ENTREZGENE, UniProtKB/TrEMBL
  O08994 ENTREZGENE
  P53564 ENTREZGENE
  P70301 ENTREZGENE
  P70381_MOUSE UniProtKB/TrEMBL
  P70403 ENTREZGENE
  Q3UMF6_MOUSE UniProtKB/TrEMBL
  Q3V2M8_MOUSE UniProtKB/TrEMBL
  Q571L6 ENTREZGENE
  Q5BL05 ENTREZGENE, UniProtKB/TrEMBL
  Q6AXG1_MOUSE UniProtKB/TrEMBL
  Q7TQJ4 ENTREZGENE
  Q91WN6 ENTREZGENE
  Q91ZD2 ENTREZGENE
  Q9CVV0_MOUSE UniProtKB/TrEMBL
  Q9JJB6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary O08994 UniProtKB/Swiss-Prot
  P70301 UniProtKB/Swiss-Prot
  Q571L6 UniProtKB/Swiss-Prot
  Q7TQJ4 UniProtKB/Swiss-Prot
  Q91WN6 UniProtKB/Swiss-Prot
  Q91ZD2 UniProtKB/Swiss-Prot