| 2318183 | Rps27l2 | ribosomal protein S27-like 2 | 12 | 29143461 | 29143842 | Rat |
| 1583825 | Fzd10 | frizzled family receptor 10 | 12 | 29164632 | 29166832 | Rat |
| 735062 | Tmem132d | transmembrane protein 132D | 12 | 29495711 | 29964532 | Rat |
| 1304896 | Glt1d1 | glycosyltransferase 1 domain containing 1 | 12 | 30026320 | 30098182 | Rat |
| 708469 | Slc15a4 | solute carrier family 15, member 4 | 12 | 30111863 | 30131134 | Rat |
| 1583824 | Tmem132c | transmembrane protein 132C | 12 | 30165347 | 30482653 | Rat |
| 1592338 | LOC689423 | hypothetical protein LOC689423 | 12 | 30491906 | 30525970 | Rat |
| 1559821 | RGD1559821 | similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle | 12 | 30532437 | 30562599 | Rat |
| 1583823 | LOC363916 | similar to 60S ribosomal protein L7 | 12 | 30598122 | 30664561 | Rat |
| 2322821 | LOC100363526 | predicted protein-like | 12 | 30937569 | 31110968 | Rat |
| 2324513 | LOC100362541 | 39S ribosomal protein L23, mitochondrial-like | 12 | 31185798 | 31186226 | Rat |
| 1592278 | Frg1l1 | FSHD region gene 1-like 1 | 12 | 31330420 | 31331196 | Rat |
| 1589976 | LOC689602 | hypothetical protein LOC689602 | 12 | 31839461 | 31853421 | Rat |
| 1560580 | RGD1560580 | similar to spermiogenesis specific transcript on the Y 2 | 12 | 31880615 | 31881481 | Rat |
| 1566191 | Tmem132b | transmembrane protein 132B | 12 | 32078370 | 32093135 | Rat |
| 708522 | Aacs | acetoacetyl-CoA synthetase | 12 | 32206863 | 32250583 | Rat |
| 1561711 | Bri3bp | Bri3 binding protein | 12 | 32270907 | 32282728 | Rat |
| 1306837 | Dhx37 | DEAH (Asp-Glu-Ala-His) box polypeptide 37 | 12 | 32288945 | 32309505 | Rat |
| 621244 | Ubc | ubiquitin C | 12 | 32333211 | 32337944 | Rat |
| 2302 | Scarb1 | scavenger receptor class B, member 1 | 12 | 32390183 | 32457661 | Rat |
| 1310293 | Ncor2 | nuclear receptor co-repressor 2 | 12 | 32617643 | 32725753 | Rat |
| 1588777 | Fam101a | family with sequence similarity 101, member A | 12 | 32730785 | 32739680 | Rat |
| 2323851 | LOC100359442 | endothelial differentiation-related factor 1-like | 12 | 32838520 | 32838949 | Rat |
| 1588756 | LOC689732 | hypothetical protein LOC689732 | 12 | 32872473 | 32897749 | Rat |
| 1561886 | RGD1561886 | similar to ribosomal protein L27 | 12 | 32881035 | 32881433 | Rat |
| 1601131 | Ccdc92 | coiled-coil domain containing 92 | 12 | 32898194 | 32924599 | Rat |
| 619988 | Dnah10 | dynein, axonemal, heavy chain 10 | 12 | 32925061 | 33058479 | Rat |
| 2324139 | LOC100362719 | eukaryotic translation initiation factor 1-like | 12 | 33027079 | 33027421 | Rat |
| 621006 | Atp6v0a2 | ATPase, H+ transporting, lysosomal V0 subunit A2 | 12 | 33061611 | 33092421 | Rat |
| 1591895 | Tctn2 | tectonic family member 2 | 12 | 33095370 | 33119921 | Rat |
| 1305494 | Gtf2h3 | general transcription factor IIH, polypeptide 3 | 12 | 33121881 | 33138233 | Rat |
| 620819 | Eif2b1 | eukaryotic translation initiation factor 2B, subunit 1 alpha | 12 | 33138323 | 33146596 | Rat |
| 2324094 | Ddx55 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 | 12 | 33147211 | 33162925 | Rat |
| 69243 | Tmed2 | transmembrane emp24 domain trafficking protein 2 | 12 | 33165291 | 33174326 | Rat |
| 1307973 | Rilpl1 | Rab interacting lysosomal protein-like 1 | 12 | 33184828 | 33222135 | Rat |
| 1310724 | Snrnp35 | small nuclear ribonucleoprotein 35 (U11/U12) | 12 | 33224503 | 33231813 | Rat |
| 1303140 | Rilpl2 | Rab interacting lysosomal protein-like 2 | 12 | 33238328 | 33250549 | Rat |
| 1587560 | Setd8 | SET domain containing (lysine methyltransferase) 8 | 12 | 33254018 | 33270657 | Rat |
| 1310005 | Sbno1 | strawberry notch homolog 1 (Drosophila) | 12 | 33289890 | 33345306 | Rat |
| 1308664 | Cdk2ap1 | cyclin-dependent kinase 2 associated protein 1 | 12 | 33365372 | 33374597 | Rat |
| 1563482 | RGD1563482 | similar to hypothetical protein FLJ38663 | 12 | 33377684 | 33391371 | Rat |
| 1598368 | Mphosph9 | M-phase phosphoprotein 9 | 12 | 33394159 | 33457830 | Rat |
| 1310867 | Pitpnm2 | phosphatidylinositol transfer protein, membrane-associated 2 | 12 | 33496702 | 33603240 | Rat |
| 1307657 | Arl6ip4 | ADP-ribosylation-like factor 6 interacting protein 4 | 12 | 33603784 | 33605929 | Rat |
| 2323732 | LOC100362961 | hypothetical protein LOC100362961 | 12 | 33606099 | 33607601 | Rat |
| 1310594 | Ogfod2 | 2-oxoglutarate and iron-dependent oxygenase domain containing 2 | 12 | 33606538 | 33609847 | Rat |
| 620254 | Abcb9 | ATP-binding cassette, subfamily B (MDR/TAP), member 9 | 12 | 33623383 | 33656242 | Rat |
| 1304576 | Vps37b | vacuolar protein sorting 37 homolog B (S. cerevisiae) | 12 | 33684358 | 33713075 | Rat |
| 621615 | Hip1r | huntingtin interacting protein 1 related | 12 | 33714225 | 33742792 | Rat |
| 1586391 | Ccdc62 | coiled-coil domain containing 62 | 12 | 33747227 | 33783930 | Rat |
| 1584200 | Denr | density-regulated protein | 12 | 33797483 | 33819744 | Rat |
| 1586364 | Hcar1 | hydroxycarboxylic acid receptor 1 | 12 | 33847986 | 33849041 | Rat |
| 727952 | Hcar2 | hydroxycarboxylic acid receptor 2 | 12 | 33863876 | 33864958 | Rat |
| 1307905 | Kntc1 | kinetochore associated 1 | 12 | 33906847 | 33977070 | Rat |
| 1564882 | Rsrc2 | arginine/serine-rich coiled-coil 2 | 12 | 33977383 | 33997328 | Rat |
| 1309774 | Zcchc8 | zinc finger, CCHC domain containing 8 | 12 | 34007470 | 34029866 | Rat |
| 2323644 | LOC100359550 | protein S100-A11-like | 12 | 34044180 | 34044683 | Rat |
| 67404 | Clip1 | CAP-GLY domain containing linker protein 1 | 12 | 34049773 | 34155531 | Rat |
| 620643 | Vps33a | vacuolar protein sorting 33 homolog A (S. cerevisiae) | 12 | 34163538 | 34189019 | Rat |
| 1564803 | RGD1564803 | RGD1564803 | 12 | 34189350 | 34196246 | Rat |
| 1310885 | Diablo | diablo, IAP-binding mitochondrial protein | 12 | 34196347 | 34209633 | Rat |
| 1309612 | B3gnt4 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 | 12 | 34209650 | 34211063 | Rat |
| 1561461 | Lrrc43 | leucine rich repeat containing 43 | 12 | 34213335 | 34231237 | Rat |
| 1585183 | Il31 | interleukin 31 | 12 | 34241470 | 34243890 | Rat |
| 1560774 | Mlxip | MLX interacting protein | 12 | 34271250 | 34287210 | Rat |
| 1585128 | LOC690085 | similar to B-cell CLL/lymphoma 7A | 12 | 34363888 | 34412520 | Rat |
| 1564948 | Wdr66 | WD repeat domain 66 | 12 | 34412943 | 34462175 | Rat |
| 621110 | Psmd9 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 | 12 | 34472250 | 34500731 | Rat |
| 1588704 | LOC689784 | hypothetical protein LOC689784 | 12 | 34482407 | 34482815 | Rat |
| 61974 | Hpd | 4-hydroxyphenylpyruvate dioxygenase | 12 | 34548320 | 34558371 | Rat |
| 2323325 | LOC100359816 | rCG21620-like | 12 | 34563884 | 34589796 | Rat |
| 1584038 | LOC690130 | similar to ras homolog gene family, member f | 12 | 34598537 | 34599106 | Rat |
| 1584031 | LOC690137 | similar to transmembrane protein induced by tumor necrosis factor alpha | 12 | 34599653 | 34619514 | Rat |
| 1311873 | Orai1 | ORAI calcium release-activated calcium modulator 1 | 12 | 34631248 | 34646316 | Rat |
| 1310217 | Kdm2b | lysine (K)-specific demethylase 2B | 12 | 34672334 | 34802802 | Rat |
| 628636 | Rnf34 | ring finger protein 34, E3 ubiquitin protein ligase | 12 | 34805137 | 34826016 | Rat |
| 1306125 | Anapc5 | anaphase-promoting complex subunit 5 | 12 | 34850485 | 34884726 | Rat |
| 620092 | Camkk2 | calcium/calmodulin-dependent protein kinase kinase 2, beta | 12 | 34907317 | 34938479 | Rat |
| 62073 | P2rx4 | purinergic receptor P2X, ligand-gated ion channel 4 | 12 | 34943900 | 34961551 | Rat |
| 1598196 | LOC501838 | similar to 60S ribosomal protein L32 | 12 | 34972257 | 34972695 | Rat |
| 3241 | P2rx7 | purinergic receptor P2X, ligand-gated ion channel, 7 | 12 | 35074025 | 35117152 | Rat |
| 727862 | Ift81 | intraflagellar transport 81 homolog (Chlamydomonas) | 12 | 35141656 | 35211847 | Rat |
| 1582877 | LOC690233 | hypothetical protein LOC690233 | 12 | 35141670 | 35142086 | Rat |
| 1586384 | LOC689916 | hypothetical protein LOC689916 | 12 | 35200663 | 35201159 | Rat |
| 2174 | Atp2a2 | ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 | 12 | 35266600 | 35316237 | Rat |
| 1311927 | Anapc7 | anaphase promoting complex subunit 7 | 12 | 35327644 | 35354839 | Rat |
| 1586359 | LOC689941 | similar to 40S ribosomal protein S2 | 12 | 35332288 | 35333146 | Rat |
| 2324823 | LOC100363066 | ribosomal protein L38-like | 12 | 35341539 | 35341750 | Rat |
| 1311985 | Arpc3 | actin related protein 2/3 complex, subunit 3 | 12 | 35366969 | 35377111 | Rat |
| 1303034 | Gpn3 | GPN-loop GTPase 3 | 12 | 35384028 | 35392646 | Rat |
| 1310861 | Fam216a | family with sequence similarity 216, member A | 12 | 35392970 | 35402113 | Rat |
| 1308332 | Vps29 | vacuolar protein sorting 29 homolog (S. cerevisiae) | 12 | 35403351 | 35412395 | Rat |
| 1308223 | Rad9b | RAD9 homolog B (S. pombe) | 12 | 35412463 | 35443713 | Rat |
| 1310383 | Pptc7 | PTC7 protein phosphatase homolog (S. cerevisiae) | 12 | 35445302 | 35483671 | Rat |
| 1566266 | Tctn1 | tectonic family member 1 | 12 | 35505936 | 35538060 | Rat |
| 1310788 | Hvcn1 | hydrogen voltage-gated channel 1 | 12 | 35536954 | 35556666 | Rat |
| 3377 | Ppp1cc | protein phosphatase 1, catalytic subunit, gamma isozyme | 12 | 35580169 | 35598249 | Rat |
| 1562334 | Ccdc63 | coiled-coil domain containing 63 | 12 | 35622123 | 35652555 | Rat |
| 1564245 | Myl2 | myosin, light chain 2, regulatory, cardiac, slow | 12 | 35653745 | 35664700 | Rat |
| 1305967 | Cux2 | cut-like homeobox 2 | 12 | 35850093 | 35910414 | Rat |
| 1310656 | Fam109a | family with sequence similarity 109, member A | 12 | 35917800 | 35921702 | Rat |
| 68411 | Sh2b3 | SH2B adaptor protein 3 | 12 | 35954679 | 35958446 | Rat |
| 1306637 | Atxn2 | ataxin 2 | 12 | 35962308 | 36009114 | Rat |
| 2322854 | LOC100360093 | F-box protein 22 | 12 | 36011213 | 36013252 | Rat |
| 1310159 | Acad10 | acyl-CoA dehydrogenase family, member 10 | 12 | 36070275 | 36075844 | Rat |
| 69219 | Aldh2 | aldehyde dehydrogenase 2 family (mitochondrial) | 12 | 36081778 | 36116445 | Rat |
| 1564113 | Mapkapk5 | mitogen-activated protein kinase-activated protein kinase 5 | 12 | 36128538 | 36147493 | Rat |
| 621467 | Adam1a | a disintegrin and metallopeptidase domain 1a | 12 | 36151883 | 36155069 | Rat |
| 2322512 | LOC100360238 | rCG21419-like | 12 | 36172795 | 36175195 | Rat |
| 1596066 | Tmem116 | transmembrane protein 116 | 12 | 36176676 | 36209989 | Rat |
| 619781 | Erp29 | endoplasmic reticulum protein 29 | 12 | 36225110 | 36231363 | Rat |
| 1305685 | Naa25 | N(alpha)-acetyltransferase 25, NatB auxiliary subunit | 12 | 36233484 | 36286678 | Rat |
| 2322461 | LOC100360290 | ribosomal protein S20-like | 12 | 36292194 | 36300679 | Rat |
| 620171 | Trafd1 | TRAF type zinc finger domain containing 1 | 12 | 36301824 | 36315741 | Rat |
| 1309762 | RGD1309762 | similar to KIAA0614 protein | 12 | 36318373 | 36423169 | Rat |
| 1594737 | LOC690517 | similar to Ornithine decarboxylase (ODC) | 12 | 36477749 | 36481225 | Rat |
| 619826 | Rpl6 | ribosomal protein L6 | 12 | 36483874 | 36487420 | Rat |
| 3447 | Ptpn11 | protein tyrosine phosphatase, non-receptor type 11 | 12 | 36501886 | 36558055 | Rat |
| 1594709 | LOC690551 | similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (SP18) | 12 | 36587258 | 36587767 | Rat |
| 620073 | Rph3a | rabphilin 3A | 12 | 36678613 | 36753316 | Rat |
| 1359379 | Oas1i | 2 ' -5 ' oligoadenylate synthetase 1I | 12 | 36760821 | 36772833 | Rat |
| 1310349 | Oas1d | 2'-5' oligoadenylate synthetase 1D | 12 | 36784809 | 36794128 | Rat |
| 621760 | Oas1a | 2'-5' oligoadenylate synthetase 1A | 12 | 36806061 | 36816722 | Rat |
| 1359732 | Oas1h | 2 ' -5 ' oligoadenylate synthetase 1H | 12 | 36819920 | 36829587 | Rat |
| 1359647 | Oas1f | 2 ' -5 ' oligoadenylate synthetase 1F | 12 | 36833433 | 36842796 | Rat |
| 708393 | Oas1b | 2-5 oligoadenylate synthetase 1B | 12 | 36858902 | 36869570 | Rat |
| 1359611 | Oas1e | 2'-5' oligoadenylate synthetase 1E | 12 | 36884699 | 36893640 | Rat |
| 1359279 | Oas1k | 2 ' -5 ' oligoadenylate synthetase 1K | 12 | 36896819 | 36906328 | Rat |
| 1311820 | Rasal1 | RAS protein activator like 1 (GAP1 like) | 12 | 37047909 | 37080129 | Rat |
| 2325045 | LOC100359686 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 | 12 | 37088767 | 37088978 | Rat |
| 1561303 | Ccdc42b | coiled-coil domain containing 42B | 12 | 37096535 | 37102545 | Rat |
| 1562539 | Ddx54 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 | 12 | 37103084 | 37117525 | Rat |
| 1306772 | RGD1306772 | similar to RIKEN cDNA 1110008J03 | 12 | 37117951 | 37121532 | Rat |
| 1560757 | Iqcd | IQ motif containing D | 12 | 37123306 | 37134576 | Rat |
| 708494 | Tpcn1 | two pore segment channel 1 | 12 | 37140428 | 37227711 | Rat |
| 1565818 | Slc24a6 | solute carrier family 24 (sodium/lithium/calcium exchanger), member 6 | 12 | 37227844 | 37250698 | Rat |
| 708461 | Plbd2 | phospholipase B domain containing 2 | 12 | 37260666 | 37279849 | Rat |
| 67376 | Sds | serine dehydratase | 12 | 37281091 | 37288403 | Rat |
| 1309192 | Sdsl | serine dehydratase-like | 12 | 37297342 | 37307847 | Rat |
| 71079 | Lhx5 | LIM homeobox 5 | 12 | 37323820 | 37332257 | Rat |
| 1308928 | Rbm19 | RNA binding motif protein 19 | 12 | 37619153 | 37704471 | Rat |
| 1305702 | Tbx5 | T-box 5 | 12 | 37956658 | 38004255 | Rat |
| 2322066 | LOC100360490 | hypothetical protein LOC100360490 | 12 | 38061700 | 38097168 | Rat |
| 735203 | Tbx3 | T-box 3 | 12 | 38155494 | 38166670 | Rat |
| 1588680 | LOC691010 | hypothetical protein LOC691010 | 12 | 38994985 | 38998231 | Rat |
| 1305884 | Med13l | mediator complex subunit 13-like | 12 | 39136265 | 39181221 | Rat |
| 1588618 | LOC691087 | hypothetical protein LOC691087 | 12 | 39415770 | 39417186 | Rat |
| 1562310 | RGD1562310 | similar to hypothetical protein FLJ21415 | 12 | 39441308 | 39461715 | Rat |
| 1560195 | Rnft2 | ring finger protein, transmembrane 2 | 12 | 39461846 | 39520071 | Rat |
| 70549 | Hrk | harakiri, BCL2 interacting protein (contains only BH3 domain) | 12 | 39520265 | 39543901 | Rat |
| 1306032 | Fbxw8 | F-box and WD repeat domain containing 8 | 12 | 39574258 | 39666586 | Rat |
| 1566317 | Tesc | tescalcin | 12 | 39669706 | 39704041 | Rat |
| 1307346 | Fbxo21 | F-box protein 21 | 12 | 39719654 | 39753892 | Rat |
| 3184 | Nos1 | nitric oxide synthase 1, neuronal | 12 | 39812500 | 39869484 | Rat |
| 2321870 | LOC100360587 | hypothetical protein LOC100360587 | 12 | 39893101 | 39896022 | Rat |
| 1562674 | Ksr2 | kinase suppressor of ras 2 | 12 | 39998030 | 40376125 | Rat |
| 1559627 | RGD1559627 | similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding inhibitor) | 12 | 40309491 | 40351847 | Rat |
| 1559640 | RGD1559640 | similar to Kinase suppressor of ras-1 (Kinase suppressor of ras) | 12 | 40356005 | 40375726 | Rat |
| 1309280 | Rfc5 | replication factor C (activator 1) 5 | 12 | 40395942 | 40405498 | Rat |
| 1359599 | Wsb2 | WD repeat and SOCS box-containing 2 | 12 | 40406890 | 40427103 | Rat |
| 1565800 | Vsig10 | V-set and immunoglobulin domain containing 10 | 12 | 40431364 | 40464081 | Rat |
| 62017 | Pebp1 | phosphatidylethanolamine binding protein 1 | 12 | 40491393 | 40495593 | Rat |
| 1562861 | Taok3 | TAO kinase 3 | 12 | 40502499 | 40583816 | Rat |
| 1305986 | Suds3 | suppressor of defective silencing 3 homolog (S. cerevisiae) | 12 | 40668710 | 40690008 | Rat |
| 1561060 | RGD1561060 | similar to hypothetical protein 4930474N05 | 12 | 40794962 | 40796415 | Rat |
| 1586300 | LOC691201 | similar to ribosomal protein S17 | 12 | 41041133 | 41041540 | Rat |
| 1560213 | Srrm4 | serine/arginine repetitive matrix 4 | 12 | 41216421 | 41373052 | Rat |
| 71003 | Hspb8 | heat shock protein B8 | 12 | 41407166 | 41421565 | Rat |
| 61331 | Eau2 | Experimental allergic uveoretinitis QTL 2 | | .0005 | Uvea inflammation score | | 12 | 1 | 29130348 | Rat |
| 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | Blood pressure | systolic | 12 | 1 | 35270263 | Rat |
| 2303575 | Insul14 | Insulin level QTL 14 | 4 | | Insulin level | | 12 | 1 | 43562201 | Rat |
| 737979 | Pia22 | Pristane induced arthritis QTL 22 | 4.1 | | Joint/bone inflammation | pristane induced | 12 | 530865 | 45530865 | Rat |
| 61416 | Pia4 | Pristane induced arthritis QTL 4 | 8.4 | | Joint/bone inflammation | number of affected paws | 12 | 568621 | 45568621 | Rat |
| 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | IL-6 level | pristane induced | 12 | 568621 | 45568621 | Rat |
| 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | .001 | Joint/bone inflammation | pristane induced | 12 | 568621 | 45568621 | Rat |
| 634350 | Apr4 | Acute phase response QTL 4 | 6 | | Alpha1 acid glycoprotein level | pristane induced | 12 | 2248421 | 46782294 | Rat |
| 61421 | Cia12 | Collagen induced arthritis QTL 12 | 4.6 | | Joint/bone inflammation | type II collagen induced | 12 | 7148164 | 36894750 | Rat |
| 2293086 | Iddm30 | Insulin dependent diabetes mellitus QTL 30 | 3.42 | | Glucose level | insulin-dependent | 12 | 8901318 | 29369703 | Rat |
| 1300157 | Rf21 | Renal function QTL 21 | 4.42 | | Renal function | salt-loaded renal blood flow | 12 | 9628802 | 33216334 | Rat |
| 1549829 | Scl48 | Serum cholesterol level QTL 48 | 5 | | Lipid level | baseline serum cholesterol | 12 | 10716230 | 46782294 | Rat |
| 1331755 | Bp219 | Blood pressure QTL 219 | 3.041 | | Blood pressure | mean arterial | 12 | 11416955 | 29130304 | Rat |
| 1331761 | Bp218 | Blood pressure QTL 218 | 2.973 | | Blood pressure | mean arterial | 12 | 11416955 | 46782294 | Rat |
| 2293699 | Bss49 | Bone structure and strength QTL 49 | 5.61 | .0001 | Bone structure | | 12 | 11612769 | 46782294 | Rat |
| 2300186 | Bmd59 | Bone mineral density QTL 59 | 7.1 | .0001 | Bone mineral density | | 12 | 11612769 | 46782294 | Rat |
| 61404 | Bw120 | Body weight QTL 120 | 5.1 | | Body weight | body mass index | 12 | 12770194 | 42387195 | Rat |
| 1641928 | Alcrsp5 | Alcohol response QTL 5 | | | Alcohol response | loss of righting reflex | 12 | 13948769 | 46782294 | Rat |
| 2303569 | Gluco44 | Glucose level QTL 44 | 2 | | Glucose level | fasting | 12 | 13948769 | 46782294 | Rat |
| 2302060 | Pia37 | Pristane induced arthritis QTL 37 | 6.1 | .001 | Joint/bone inflammation | pristane induced | 12 | 14334630 | 46782294 | Rat |
| 1549902 | Bp269 | Blood pressure QTL 269 | | | Blood pressure | diastolic, daytime | 12 | 14356765 | 46782294 | Rat |
| 1549912 | Bp268 | Blood pressure QTL 268 | | | Blood pressure | diastolic, daytime | 10 | 14356765 | 46782294 | Rat |
| 2293684 | Bmd26 | Bone mineral density QTL 26 | 4.4 | .0002 | Bone mineral density | | 12 | 16387455 | 34112949 | Rat |
| 631543 | Bp83 | Blood pressure QTL 83 | 5.8 | | Blood pressure | systolic | 12 | 16535858 | 39626712 | Rat |
| 70213 | Niddm27 | Non-insulin dependent diabetes mellitus QTL 27 | 3.72 | | Glucose level | fasting | 12 | 18937438 | 39323046 | Rat |
| 631560 | Apr1 | Acute phase response QTL 1 | 6.1 | | Alpha1 acid glycoprotein level | pristane induced | 12 | 20418353 | 46782294 | Rat |
| 1298081 | Cia25 | Collagen induced arthritis QTL 25 | 4.7 | | Joint/bone inflammation | type II collagen induced | 12 | 20932555 | 36894750 | Rat |
| 737822 | Alc10 | Alcohol consumption QTL 10 | 2.2 | | Consumption level | alcohol preference | 12 | 20932559 | 41447890 | Rat |
| 5684888 | Pia42 | Pristane induced arthritis QTL 42 | | | Joint/bone inflammation | pristane induced | 12 | 20932559 | 43863270 | Rat |
| 1331763 | Wbc2 | White blood cell count QTL 2 | 3.162 | | White blood cell count | | 12 | 25271823 | 32988661 | Rat |
| 70169 | Eae13 | Experimental allergic encephalomyelitis QTL 13 | | .032 | Brain/spinal cord inflammation | demyelination | 12 | 25367251 | 37906389 | Rat |
| 1556747 | Calcic1 | Intracellular calcium level QTL 1 | | 3.6 | Intracellular calcium level | thrombin-stimulated | 12 | 29130180 | 42387195 | Rat |
| 1600386 | Calcic2 | Intracellular calcium level QTL 2 | | .001 | Intracellular calcium level | thrombin-stimulated | 12 | 29130180 | 42387195 | Rat |
| 1300175 | Cm5 | Cardiac mass QTL 5 | 3.78 | | Cardiac mass | salt-loaded left ventricle | 12 | 29130180 | 46043557 | Rat |
| 1331787 | Rf41 | Renal function QTL 41 | 2.998 | | Renal function | renal blood flow | 12 | 29130304 | 41447755 | Rat |
| 631829 | Alc6 | Alcohol consumption QTL 6 | 4.7 | | Consumption level | alcohol preference | 12 | 29675888 | 39018219 | Rat |
| 1300162 | Bp188 | Blood pressure QTL 188 | 3.19 | | Blood pressure | salt-loaded systolic | 12 | 33216127 | 46043557 | Rat |