Rps29 (ribosomal protein S29) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rps29 (ribosomal protein S29) Rattus norvegicus
Analyze
Symbol: Rps29
Name: ribosomal protein S29
RGD ID: 3596
Description: Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Involved in positive regulation of apoptotic process. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Orthologous to human RPS29 (ribosomal protein S29); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S29; small ribosomal subunit protein uS14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps29-ps15   Rps29-ps16   Rps29-ps17  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1387,816,954 - 87,817,267 (+)EnsemblGRCr8
GRCr8 Ensembl693,371,294 - 93,372,700 (-)EnsemblGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)Ensemblrn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera686,134,478 - 86,135,854 (-)NCBICelera
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
Allylamine  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
clothianidin  (ISO)
copper(II) sulfate  (ISO)
cypermethrin  (EXP)
deoxynivalenol  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dicrotophos  (ISO)
diuron  (EXP)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (EXP)
Mesaconitine  (EXP)
methidathion  (ISO)
methylparaben  (ISO)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
ozone  (EXP)
palbociclib  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorodecanoic acid  (ISO)
perfluorononanoic acid  (ISO)
phenanthrene  (ISO)
PhIP  (EXP)
propanal  (ISO)
Propiverine  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Zinc finger-like motifs in rat ribosomal proteins S27 and S29. Chan YL, etal., Nucleic Acids Res 1993 Feb 11;21(3):649-55.
3. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Differential gene expression in apoptosis: identification of ribosomal protein S29 as an apoptotic inducer. Khanna N, etal., Biochem Biophys Res Commun. 2000 Oct 22;277(2):476-86.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:8706699   PMID:8781548   PMID:15489334   PMID:15883184   PMID:20458337   PMID:21423176   PMID:24930395   PMID:25957688   PMID:31505169   PMID:35352799  


Genomics

Comparative Map Data
Rps29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1387,816,954 - 87,817,267 (+)EnsemblGRCr8
GRCr8 Ensembl693,371,294 - 93,372,700 (-)EnsemblGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)Ensemblrn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera686,134,478 - 86,135,854 (-)NCBICelera
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Cytogenetic Map6q24NCBI
RPS29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,570,988 - 49,598,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,570,984 - 49,599,164 (-)Ensemblhg38GRCh38
GRCh371450,037,706 - 50,065,428 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,113,789 - 49,122,844 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341449,120,052 - 49,122,844NCBI
Celera1429,903,866 - 29,912,921 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,160,698 - 30,170,443 (-)NCBIHuRef
CHM1_11449,982,406 - 49,992,150 (-)NCBICHM1_1
T2T-CHM13v2.01443,769,235 - 43,796,961 (-)NCBIT2T-CHM13v2.0
Rps29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,204,495 - 69,205,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,204,496 - 69,205,960 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381269,157,722 - 69,159,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,157,722 - 69,159,186 (-)Ensemblmm10GRCm38
MGSCv371270,258,709 - 70,260,173 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361270,076,330 - 70,077,675 (-)NCBIMGSCv36mm8
Celera1270,249,756 - 70,251,220 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rps29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,055,341 - 13,056,437 (+)Ensembl
ChiLan1.0NW_00495540913,056,022 - 13,057,530 (+)NCBIChiLan1.0ChiLan1.0
RPS29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,701,900 - 50,711,031 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,918,405 - 49,927,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,155,559 - 30,164,677 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,459,215 - 48,474,644 (-)NCBIPanPan1.1PanPan1.1panPan2
RPS29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,221,546 - 26,223,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936583426,478 - 426,923 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,694,881 - 199,696,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,621,394 - 26,631,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,628,561 - 26,632,048 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605314,935,901 - 14,945,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473119,107,593 - 19,109,651 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps29
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1782,824,792 - 82,826,167 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps29
9 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:70
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000005577
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
35 23 142 331 215 213 136 128 136 17 661 338 11 280 141 180 77 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005577   ⟹   ENSRNOP00000005577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)Ensembl
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116660   ⟹   ENSRNOP00000097962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,635,820 - 87,636,636 (-)Ensembl
RefSeq Acc Id: NM_012876   ⟹   NP_037008
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,371,293 - 93,372,691 (-)NCBI
mRatBN7.2687,635,229 - 87,636,627 (-)NCBI
Rnor_6.0691,455,333 - 91,456,709 (-)NCBI
Rnor_5.06100,914,106 - 100,915,482 (-)NCBI
RGSC_v3.4691,115,709 - 91,117,085 (-)RGD
Celera686,134,478 - 86,135,854 (-)RGD
Sequence:
RefSeq Acc Id: XM_063261561   ⟹   XP_063117631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,371,293 - 93,372,731 (-)NCBI
Protein Sequences
Protein RefSeqs NP_037008 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117631 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58150 (Get FASTA)   NCBI Sequence Viewer  
  CAA41778 (Get FASTA)   NCBI Sequence Viewer  
  EDM03498 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005577
  ENSRNOP00000005577.5
  ENSRNOP00000044909.2
GenBank Protein P62275 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037008   ⟸   NM_012876
- UniProtKB: P62275 (UniProtKB/Swiss-Prot),   A6HBU3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005577   ⟸   ENSRNOT00000005577
Ensembl Acc Id: ENSRNOP00000097962   ⟸   ENSRNOT00000116660
RefSeq Acc Id: XP_063117631   ⟸   XM_063261561
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMA6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62275-F1-model_v2 AlphaFold P62275 1-56 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694630
Promoter ID:EPDNEW_R5154
Type:initiation region
Name:LOC108352650_1
Description:40S ribosomal protein S29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0691,456,731 - 91,456,791EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3596 AgrOrtholog
BioCyc Gene G2FUF-37262 BioCyc
Ensembl Genes ENSRNOG00000004196 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000028939 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000029443 Ensembl
  ENSRNOG00000032542 Ensembl
Ensembl Transcript ENSRNOT00000005577 ENTREZGENE
  ENSRNOT00000005577.8 UniProtKB/Swiss-Prot
  ENSRNOT00000041384.5 UniProtKB/Swiss-Prot
Gene3D-CATH 30s Ribosomal Protein S14, Chain N UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6922365 IMAGE-MGC_LOAD
InterPro 40S_S29/30S_S14z UniProtKB/Swiss-Prot
  Ribosomal_S14 UniProtKB/Swiss-Prot
  Ribosomal_S14/S29 UniProtKB/Swiss-Prot
  Ribosomal_S14_CS UniProtKB/Swiss-Prot
KEGG Report rno:25348 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72902 IMAGE-MGC_LOAD
NCBI Gene 25348 ENTREZGENE
PANTHER PTHR12010 UniProtKB/Swiss-Prot
  SMALL RIBOSOMAL SUBUNIT PROTEIN US14 UniProtKB/Swiss-Prot
Pfam Ribosomal_S14 UniProtKB/Swiss-Prot
PhenoGen Rps29 PhenoGen
PROSITE RIBOSOMAL_S14 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004196 RatGTEx
  ENSRNOG00000028939 RatGTEx
  ENSRNOG00000029443 RatGTEx
  ENSRNOG00000032542 RatGTEx
TIGR TC216887
UniProt A0A8I6GMA6 ENTREZGENE
  A6HBU3 ENTREZGENE, UniProtKB/TrEMBL
  P62275 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P30054 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps29  Ribosomal protein S29      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 55 amino acids and a molecular weight of 6,541 633964