Rps29-ps16 (ribosomal protein S29, pseudogene 16) - Rat Genome Database

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Gene: Rps29-ps16 (ribosomal protein S29, pseudogene 16) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps29-ps16 (Ensembl: LOC108348980)
Name: ribosomal protein S29, pseudogene 16 (Ensembl:40S ribosomal protein S29 pseudogene)
RGD ID: 11376557
Description: Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Orthologous to human RPS29 (ribosomal protein S29).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 40S ribosomal protein S29; LOC108352650
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps29  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,816,958 - 87,817,269 (+)NCBIGRCr8
mRatBN7.21385,284,638 - 85,284,949 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01391,333,998 - 91,334,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)EnsemblRnor6.0rn6Rnor6.0
Celera1384,893,895 - 84,894,220 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
1302791Stl29Serum triglyceride level QTL 293.30.0011blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)138473078886800898Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005577   ⟹   ENSRNOP00000005577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000041384   ⟹   ENSRNOP00000044909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116660   ⟹   ENSRNOP00000097962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,635,820 - 87,636,636 (-)Ensembl
RefSeq Acc Id: XM_017599048   ⟹   XP_017454537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21385,284,622 - 85,284,968 (+)NCBI
Rnor_6.01391,333,998 - 91,334,323 (+)NCBI
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62275-F1-model_v2 AlphaFold P62275 1-56 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699037
Promoter ID:EPDNEW_R9559
Type:multiple initiation site
Name:LOC108350501_1
Description:40S ribosomal protein S29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01391,333,996 - 91,334,056EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11376557 AgrOrtholog
BioCyc Gene G2FUF-17294 BioCyc
Ensembl Genes ENSRNOG00000004196 Ensembl
  ENSRNOG00000028939 Ensembl, ENTREZGENE
  ENSRNOG00000029443 Ensembl
  ENSRNOG00000032542 Ensembl
NCBI Gene LOC108352650 ENTREZGENE
PhenoGen Rps29-ps16 PhenoGen
RatGTEx ENSRNOG00000004196 RatGTEx
  ENSRNOG00000028939 RatGTEx
  ENSRNOG00000029443 RatGTEx
  ENSRNOG00000032542 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-15 Rps29-ps16  ribosomal protein S29, pseudogene 16  LOC108352650  40S ribosomal protein S29  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2016-08-02 LOC108352650  40S ribosomal protein S29      Symbol and Name status set to provisional 70820 PROVISIONAL