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Gene: Slco2a1 (solute carrier organic anion transporter family, member 2a1) Rattus norvegicus

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Symbol:

Slco2a1

Name:

solute carrier organic anion transporter family, member 2a1

RGD ID:

3051

Description:

Predicted to enable prostaglandin transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to be located in basal plasma membrane. Predicted to be active in basolateral plasma membrane. Human ortholog(s) of this gene implicated in primary hypertrophic osteoarthropathy. Orthologous to human SLCO2A1 (solute carrier organic anion transporter family member 2A1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Matr1; Matrin F/G; matrin F/G 1; OATP2A1; PGT; PHOAR2; prostaglandin transporter; Slc21a2; solute carrier family 21 (prostaglandin transporter) member 2; solute carrier family 21 (prostaglandin transporter), member 2; solute carrier family 21 member 2; solute carrier organic anion transporter family member 2A1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	112,467,739 - 112,551,923 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	112,467,160 - 112,551,921 (+)	Ensembl				GRCr8
mRatBN7.2	8	103,588,916 - 103,672,546 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	103,588,916 - 103,672,546 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	109,252,126 - 109,332,029 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	107,451,296 - 107,531,195 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	105,293,972 - 105,373,875 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	111,495,443 - 111,577,320 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	111,495,331 - 111,577,833 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	110,886,314 - 110,968,548 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	108,012,829 - 108,098,561 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	102,966,792 - 103,051,202 (+)	NCBI		Celera
RGSC_v3.1	8	108,032,283 - 108,118,016 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

basal cell carcinoma (ISO)

Colorectal Neoplasms (ISO)

Desbuquois dysplasia (ISO)

genetic disease (ISO)

primary hypertrophic osteoarthropathy (ISO)

Primary Hypertrophic Osteoarthropathy, Autosomal Dominant (ISO)

Primary Hypertrophic Osteoarthropathy, Autosomal Recessive, 1 (ISO)

Primary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(S)-nicotine (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-methoxyethanol (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (ISO)

Bufotalin (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlordecone (ISO)

chloroprene (ISO)

choline (EXP)

chromium(6+) (ISO)

ciprofibrate (ISO)

clofibrate (ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

diclofenac (ISO)

diethyl maleate (EXP)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

endosulfan (EXP)

esketamine (ISO)

ethylparaben (ISO)

ferric oxide (EXP)

flutamide (EXP)

furan (EXP)

genistein (ISO)

indometacin (ISO)

ketoprofen (ISO)

L-methionine (EXP)

lead diacetate (EXP,ISO)

lumiracoxib (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methylmercury chloride (EXP)

mifepristone (ISO)

N,N-diethyl-m-toluamide (EXP)

N-ethyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (EXP,ISO)

naproxen (ISO)

nefazodone (EXP)

nicotine (ISO)

nimesulide (EXP)

okadaic acid (ISO)

ozone (EXP)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

prostaglandin E2 (ISO)

quercetin (ISO)

resveratrol (ISO)

rifampicin (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

spironolactone (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

triclosan (ISO)

Triptolide (EXP)

triptonide (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (EXP)

vinclozolin (EXP)

zidovudine (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid transport (IEA)

monoatomic ion transport (IEA)

prostaglandin transport (IBA,ISO)

sodium-independent organic anion transport (IBA)

transmembrane transport (IEA)

Cellular Component

basal plasma membrane (IEA,ISO,ISS)

basolateral plasma membrane (IBA)

cytoplasm (IEA)

lysosome (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

lipid transporter activity (IEA)

prostaglandin transmembrane transporter activity (IBA,ISO)

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression of PGT in MDCK cell monolayers: polarized apical localization and induction of active PG transport.	Endo S, etal., Am J Physiol Renal Physiol 2002 Apr;282(4):F618-22.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Molecular cloning of matrin F/G: A DNA binding protein of the nuclear matrix that contains putative zinc finger motifs.	Hakes DJ and Berezney R, Proc Natl Acad Sci U S A 1991 Jul 15;88(14):6186-90.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7754369	PMID:10484490	PMID:12189169	PMID:30420359

Genomics

Comparative Map Data

Slco2a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	112,467,739 - 112,551,923 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	112,467,160 - 112,551,921 (+)	Ensembl				GRCr8
mRatBN7.2	8	103,588,916 - 103,672,546 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	103,588,916 - 103,672,546 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	109,252,126 - 109,332,029 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	107,451,296 - 107,531,195 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	105,293,972 - 105,373,875 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	111,495,443 - 111,577,320 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	111,495,331 - 111,577,833 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	110,886,314 - 110,968,548 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	108,012,829 - 108,098,561 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	102,966,792 - 103,051,202 (+)	NCBI		Celera
RGSC_v3.1	8	108,032,283 - 108,118,016 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

SLCO2A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	133,932,701 - 134,029,925 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	133,932,699 - 134,052,184 (-)	Ensembl			hg38	GRCh38
GRCh37	3	133,651,545 - 133,748,769 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	135,134,230 - 135,231,418 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	135,134,239 - 135,231,426	NCBI
Celera	3	132,077,395 - 132,174,290 (-)	NCBI		Celera
Cytogenetic Map	3	q22.1-q22.2	NCBI
HuRef	3	131,029,670 - 131,126,922 (-)	NCBI		HuRef
CHM1_1	3	133,615,353 - 133,712,732 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	136,677,860 - 136,775,063 (-)	NCBI		T2T-CHM13v2.0

Slco2a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	102,885,686 - 102,973,201 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	102,865,911 - 102,973,201 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	103,007,061 - 103,096,002 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	102,988,712 - 103,096,002 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	102,910,819 - 102,990,179 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	102,866,770 - 102,944,916 (+)	NCBI		MGSCv36	mm8
Celera	9	102,558,775 - 102,638,236 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	54.72	NCBI

Slco2a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	4,543,194 - 4,625,715 (+)	Ensembl
ChiLan1.0	NW_004955501	4,544,065 - 4,623,615 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLCO2A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	131,856,980 - 131,954,728 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	131,861,709 - 131,959,457 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	130,978,103 - 131,075,786 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	138,452,986 - 138,549,782 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	138,454,881 - 138,549,785 (-)	Ensembl			panPan2	panpan1.1

SLCO2A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	30,797,956 - 30,877,340 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	30,797,890 - 30,877,340 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	30,777,043 - 30,856,125 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	31,316,928 - 31,398,369 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	31,318,754 - 31,398,430 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	31,012,180 - 31,091,151 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	31,069,931 - 31,148,746 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	31,317,639 - 31,396,502 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slco2a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	70,308,469 - 70,395,441 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	7,068,970 - 7,155,950 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	7,069,003 - 7,155,229 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLCO2A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	75,106,607 - 75,190,022 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	75,108,540 - 75,189,660 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	82,607,281 - 82,614,511 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	13	82,682,287 - 82,806,558 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLCO2A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	56,339,585 - 56,427,196 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	56,339,744 - 56,430,032 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	29,322,188 - 29,409,777 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slco2a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	10,256,799 - 10,339,827 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	10,256,799 - 10,339,388 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slco2a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	94,353,187 - 94,387,744 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slco2a1
618 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	68
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000012162
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
8693654	Alc32	Alcohol consumption QTL 32	2	0.755	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	8	97492344	116428905	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	111249511	117802327	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

D8Arb18

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	112,550,107 - 112,550,390 (+)	Marker Load Pipeline
mRatBN7.2	8	103,671,211 - 103,671,496 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,575,988 - 111,576,270	NCBI	Rnor6.0
Rnor_5.0	8	110,966,733 - 110,967,015	UniSTS	Rnor5.0
RGSC_v3.4	8	108,097,851 - 108,098,134	RGD	RGSC3.4
RGSC_v3.4	8	108,097,852 - 108,098,134	UniSTS	RGSC3.4
Celera	8	103,049,874 - 103,050,152	UniSTS
RGSC_v3.1	8	108,117,306 - 108,117,589	RGD
RH 3.4 Map	8	1161.5	UniSTS
RH 3.4 Map	8	1161.5	RGD
RH 2.0 Map	8	865.7	RGD
SHRSP x BN Map	8	66.31	RGD
Cytogenetic Map	8	q32	UniSTS

D8Wox25

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	112,550,108 - 112,550,325 (+)	Marker Load Pipeline
mRatBN7.2	8	103,671,212 - 103,671,431 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,575,989 - 111,576,205	NCBI	Rnor6.0
Rnor_5.0	8	110,966,734 - 110,966,950	UniSTS	Rnor5.0
RGSC_v3.4	8	108,097,853 - 108,098,069	UniSTS	RGSC3.4
Celera	8	103,049,875 - 103,050,087	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH141245

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	103,672,776 - 103,672,963 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,577,551 - 111,577,737	NCBI	Rnor6.0
Rnor_5.0	8	110,968,296 - 110,968,482	UniSTS	Rnor5.0
RGSC_v3.4	8	108,099,415 - 108,099,601	UniSTS	RGSC3.4
Celera	8	103,051,433 - 103,051,619	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	155	91	90	59	31	59	6	295	131	10	131	81	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M64862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012162 ⟹ ENSRNOP00000012162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	112,513,554 - 112,551,921 (+)	Ensembl
mRatBN7.2 Ensembl	8	103,588,916 - 103,672,546 (+)	Ensembl
Rnor_6.0 Ensembl	8	111,495,443 - 111,576,697 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091275 ⟹ ENSRNOP00000069382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	112,487,205 - 112,551,921 (+)	Ensembl
mRatBN7.2 Ensembl	8	103,588,916 - 103,672,546 (+)	Ensembl
Rnor_6.0 Ensembl	8	111,495,331 - 111,577,833 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164303 ⟹ ENSRNOP00000102290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	112,467,160 - 112,551,921 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168642 ⟹ ENSRNOP00000110951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	112,467,160 - 112,551,921 (+)	Ensembl

RefSeq Acc Id:

NM_022667 ⟹ NP_073158

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	112,467,739 - 112,551,440 (+)	NCBI
mRatBN7.2	8	103,588,916 - 103,672,546 (+)	NCBI
Rnor_6.0	8	111,495,443 - 111,577,320 (+)	NCBI
Rnor_5.0	8	110,886,314 - 110,968,548 (+)	NCBI
RGSC_v3.4	8	108,012,829 - 108,098,561 (+)	RGD
Celera	8	102,966,792 - 103,051,202 (+)	NCBI

Sequence:

show sequence

CGGAAGCCCGAAGCACCGGAGTCCCGCAGAACCTGACTCCGGCCTGTCACCACCACCAAAGGCT
AGGGGACGTCGCCTCGGTCACTATGGGGCTCCTGCTCAAGCCTGGAGCGCGCCAGGGCAGCGGC
ACCTCCTCGGTCCCAGACAGACGTTGTCCCCGCTCCGTCTTCAGCAACATTAAGGTATTTGTTC
TTTGCCATGGCCTGCTACAGCTCTGTCAGCTGCTCTACAGCGCCTACTTCAAGAGCAGTCTCAC
CACAATCGAGAAGCGCTTTGGGCTCTCCAGCTCTTCCTCTGGTCTCATCTCCAGTTTGAATGAG
ATCAGCAACGCTACCCTCATCATCTTCATTAGCTACTTCGGCAGCCGGGTCAACCGCCCACGGA
TGATTGGCATAGGGGGTCTCCTCCTGGCTGCAGGGGCCTTTGTCCTCACCCTCCCACACTTCCT
GTCAGAGCCCTATCAATACACCTCGACCACGGATGGAAACAGGAGCAGCTTTCAGACTGACCTC
TGTCAGAAGCATTTGCCAGCCCTGCCCCCCAGTAAGTGCCATAGCACCGTGCCAGATACCCACA
AGGAGACCAGCAGCCTGTGGGGCCTGATGGTGGTTGCTCAACTACTGGCCGGCATTGGGACAGT
GCCCATCCAGCCCTTTGGGATCTCCTACGTGGATGACTTTGCCGAGCCTACCAACTCACCTCTG
TATATCTCCATCCTATTCGCCATCGCTGTGTTCGGACCGGCTTTCGGGTACCTGCTGGGCTCAG
TCATGCTGAGAATCTTCGTGGACTACGGCAGAGTGGACACTGCTACCGTAAACCTGAGCCCAGG
TGACCCTCGGTGGATTGGAGCCTGGTGGCTGGGCCTGCTCATCTCCTCAGGCTTCTTGATTGTC
ACCTCTTTGCCCTTCTTTTTCTTTCCCCGAGCAATGTCCAGAGGAGCAGAGAGGTCTGTTACCG
CAGAGGAAACAATGAAGACGGAGGAGGACAAGTCAAGAGGCTCCCTGATGGATTTCATTAAACG
GTTCCCCCGCATCTTCCTGAGGCTGCTGATGAACCCGCTCTTCATGCTGGTGGTCCTGAGCCAG
TGTACCTTCTCCTCAGTCATCGCTGGCCTCTCCACATTCCTCAACAAGTTCCTGGAGAAGCAGT
ATGGAGCCACGGCAGCCTATGCCAACTTCCTCATCGGTGCTGTAAATCTTCCGGCTGCAGCCTT
GGGGATGCTGTTTGGAGGAATCCTCATGAAGCGTTTTGTTTTCCCTCTGCAAACTATCCCCCGA
GTGGCTGCCACCATCATCACCATCTCCATGATCCTCTGTGTACCTCTCTTCTTTATGGGATGCT
CCACATCAGCCGTGGCTGAGGTCTACCCTCCCAGCACATCAAGTTCTATACATCCGCAGCAGCC
TCCTGCCTGCCGCAGGGACTGCTCGTGCCCAGATTCCTTCTTCCACCCAGTCTGTGGAGACAAT
GGAGTCGAGTACGTTTCCCCTTGCCACGCCGGCTGCAGCAGCACCAACACAAGCTCAGAAGCTT
CTAAGGAACCGATCTACTTGAACTGCAGCTGTGTGAGTGGAGGATCGGCGTCAGCCAAGACAGG
CTCATGCCCCACGTCCTGCGCGCAGCTACTGCTCCCGTCCATCTTCCTCATTTCCTTTGCGGCG
CTCATTGCCTGCATCTCCCACAACCCGCTCTACATGATGGTCCTTCGCGTGGTGAACCAGGATG
AAAAGTCGTTTGCCATTGGGGTACAGTTCTTGTTGATGCGCTTGCTGGCCTGGCTGCCGGCTCC
ATCCCTTTATGGCCTCCTCATCGACTCCTCCTGTGTCCGGTGGAACTACCTATGCTCAGGGAGA
CGAGGGGCCTGTGCGTATTATGACAACGATGCTCTCCGAAACAGGTACCTGGGCCTACAGATGG
TCTACAAGGCCTTGGGCACACTGCTGCTCTTCTTCATCAGCTGGAGGATGAAGAAGAACAGGGA
ATACAGCCTGCAGGAGAACACCTCAGGCCTCATCTGACCCTCAGCTGGGACTACTGCCCCACCC
CAGAGACTGGATCCTATCCCTTCCACACCTACCTGTATTAACTAATGTTAACATGCCTTCCTCC
TCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACATGAGAGAGAGTTC
ACTCACCCTTTGAGTCACCTGCCTTTTCTCTTCTGCCTAAAGTCTTAAGGCCTGAAGTACACTG
AGCTGAATGAGCACCGGGCCTGAGAGTTTAGTTTCTCCAAGTCCTTGGAAGGTATCCCCAGTGT
AGGCCCTACGTCCTCCAGACAAGATGCCCATAATGAGGCGGCCTCTGTTTTCACCAGTGTCTCA
GGAATACTTAATGGAGTGAAAAGAGGGAGTCTTGCCTTCTGGGCCAGGCAGCCCGGATCTCCTC
TGCCTCTGCCCACACCCAGGAGAGCCAGAGGAGAAGCAGGTAGTTGGTTTCTTATCAGCTCCAG
CGGGGCTAAGGGAGCTGGCTGTGTCCACTTTTCATCTGGATTCCGTCTAGCATGAAAGCCGTGC
CCTCGAGGCTGTTTTGGAAACCACCATTTTGGGAAGTATCCCTCTCTATAAACTATGCCCCGGT
ATCTGAGGAGGAATGAAGGGACCAACAAGGCTGGATCATCCAAAACTGTTCACAGGAACCTGAG
GCCTATCCTCCCGTCGGCATACGCTTCTTTCTGCCTTTCAACCCAACAGAGTCACAAGGAACCC
ACCTAAGAAGGGCCCAGTCTCCCACCCTCACAGTGGAGACAAGGCCTTTCCCTTCAGAGACACA
AATGGTGATCTCTACCGTGCCTCACGTGGACTTCGCTGTCTGGACTTCAGCTCCTGTGCAGAGG
AGTGTGGGGGCAGGGGGGGGGGACCTGAGATACAGCCAGAGTAATGGTGGAGCAGAATGGATGC
CACTTGTCACTGTGCTCGATGACAAGTTGCAGCCCATAAAAAGGTTGACTTGCTTGCAAACACA
TTGTGTTCGTTGGCATTTTCTCAGCTTCTCCTCACTACCTCTGGGTGGAGATGGGCACCTTCTG
TGGGCCTGGGCTGGGGGCCACCCCTGCTATGCAATGGAGAGGCAAAGGCAGAGGTCCAGGAATA
AGGAGGCTTCTACCAATGATTTTGTTTAATGGTGCTTGACAGAGATATTGTATGGTTCTCTGAG
AGCTCCCCTGAAAACCTTACCTCCAACCACACAAGGGCTTCCTCCCAGAGAGCGCTCGCTGGGC
AGCAAGGACACACTCCCATACTTGCCAAGCATATCAAGTACCCAAAGATTGGCAGAAAAGATCC

hide sequence

RefSeq Acc Id:

XM_006243655 ⟹ XP_006243717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	112,467,797 - 112,551,923 (+)	NCBI
mRatBN7.2	8	103,589,046 - 103,671,343 (+)	NCBI
Rnor_6.0	8	111,495,546 - 111,576,119 (+)	NCBI
Rnor_5.0	8	110,886,314 - 110,968,548 (+)	NCBI

Sequence:

show sequence

GCCTGGAGCGCGCCAGGGCAGCGGCACCTCCTCGGTCCCAGACAGACGTTGTCCCCGCTCCGTC
TTCAGCAACATTAAGGTGGCTCTCCTGATGGCTGAGTGCTCCAGACCACAGGTTACCGTGACAT
CTTGAAGACGTGATACCCCCTTGCTTCTCACAAACCAGGTATTTGTTCTTTGCCATGGCCTGCT
ACAGCTCTGTCAGCTGCTCTACAGCGCCTACTTCAAGAGCAGTCTCACCACAATCGAGAAGCGC
TTTGGGCTCTCCAGCTCTTCCTCTGGTCTCATCTCCAGTTTGAATGAGATCAGCAACGCTACCC
TCATCATCTTCATTAGCTACTTCGGCAGCCGGGTCAACCGCCCACGGATGATTGGCATAGGGGG
TCTCCTCCTGGCTGCAGGGGCCTTTGTCCTCACCCTCCCACACTTCCTGTCAGAGCCCTATCAA
TACACCTCGACCACGGATGGAAACAGGAGCAGCTTTCAGACTGACCTCTGTCAGAAGCATTTGC
CAGCCCTGCCCCCCAGTAAGTGCCATAGCACCGTGCCAGATACCCACAAGGAGACCAGCAGCCT
GTGGGGCCTGATGGTGGTTGCTCAACTACTGGCCGGCATTGGGACAGTGCCCATCCAGCCCTTT
GGGATCTCCTACGTGGATGACTTTGCCGAGCCTACCAACTCACCTCTGTATATCTCCATCCTAT
TCGCCATCGCTGTGTTCGGACCGGCTTTCGGGTACCTGCTGGGCTCAGTCATGCTGAGAATCTT
CGTGGACTACGGCAGAGTGGACACTGCTACCGTAAACCTGAGCCCAGGTGACCCTCGGTGGATT
GGAGCCTGGTGGCTGGGCCTGCTCATCTCCTCAGGCTTCTTGATTGTCACCTCTTTGCCCTTCT
TTTTCTTTCCCCGAGCAATGTCCAGAGGAGCAGAGAGGTCTGTTACCGCAGAGGAAACAATGAA
GACGGAGGAGGACAAGTCAAGAGGCTCCCTGATGGATTTCATTAAACGGTTCCCCCGCATCTTC
CTGAGGCTGCTGATGAACCCGCTCTTCATGCTGGTGGTCCTGAGCCAGTGTACCTTCTCCTCAG
TCATCGCTGGCCTCTCCACATTCCTCAACAAGTTCCTGGAGAAGCAGTATGGAGCCACGGCAGC
CTATGCCAACTTCCTCATCGGTGCTGTAAATCTTCCGGCTGCAGCCTTGGGGATGCTGTTTGGA
GGAATCCTCATGAAGCGTTTTGTTTTCCCTCTGCAAACTATCCCCCGAGTGGCTGCCACCATCA
TCACCATCTCCATGATCCTCTGTGTACCTCTCTTCTTTATGGGATGCTCCACATCAGCCGTGGC
TGAGGTCTACCCTCCCAGCACATCAAGTTCTATACATCCGCAGCAGCCTCCTGCCTGCCGCAGG
GACTGCTCGTGCCCAGATTCCTTCTTCCACCCAGTCTGTGGAGACAATGGAGTCGAGTACGTTT
CCCCTTGCCACGCCGGCTGCAGCAGCACCAACACAAGCTCAGAAGCTTCTAAGGAACCGATCTA
CTTGAACTGCAGCTGTGTGAGTGGAGGATCGGCGTCAGCCAAGACAGGCTCATGCCCCACGTCC
TGCGCGCAGCTACTGCTCCCGTCCATCTTCCTCATTTCCTTTGCGGCGCTCATTGCCTGCATCT
CCCACAACCCGCTCTACATGATGGTCCTTCGCGTGGTGAACCAGGATGAAAAGTCGTTTGCCAT
TGGGGTACAGTTCTTGTTGATGCGCTTGCTGGCCTGGCTGCCGGCTCCATCCCTTTATGGCCTC
CTCATCGACTCCTCCTGTGTCCGGTGGAACTACCTATGCTCAGGGAGACGAGGGGCCTGTGCGT
ATTATGACAACGATGCTCTCCGAAACAGGTACCTGGGCCTACAGATGGTCTACAAGGCCTTGGG
CACACTGCTGCTCTTCTTCATCAGCTGGAGGATGAAGAAGAACAGGGAATACAGCCTGCAGGAG
AACACCTCAGGCCTCATCTGACCCTCAGCTGGGACTACTGCCCCACCCCAGAGACTGGATCCTA
TCCCTTCCACACCTACCTGTATTAACTAATGTTAACATGCCTTCCTCCTCCTCTTCTTCCTCCT
CCTCCTCCTCCTCCTCCTTCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

hide sequence

RefSeq Acc Id:

XM_039080798 ⟹ XP_038936726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	112,520,313 - 112,551,923 (+)	NCBI
mRatBN7.2	8	103,641,421 - 103,671,343 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_073158	(Get FASTA)	NCBI Sequence Viewer
	XP_006243717	(Get FASTA)	NCBI Sequence Viewer
	XP_038936726	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41574	(Get FASTA)	NCBI Sequence Viewer
	EDL77394	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012162
	ENSRNOP00000110951
GenBank Protein	Q00910	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_073158 ⟸ NM_022667

- UniProtKB:

Q00910 (UniProtKB/Swiss-Prot), A0A0G2JV79 (UniProtKB/TrEMBL), A6I2I3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLLLKPGARQGSGTSSVPDRRCPRSVFSNIKVFVLCHGLLQLCQLLYSAYFKSSLTTIEKRFG
LSSSSSGLISSLNEISNATLIIFISYFGSRVNRPRMIGIGGLLLAAGAFVLTLPHFLSEPYQYT
STTDGNRSSFQTDLCQKHLPALPPSKCHSTVPDTHKETSSLWGLMVVAQLLAGIGTVPIQPFGI
SYVDDFAEPTNSPLYISILFAIAVFGPAFGYLLGSVMLRIFVDYGRVDTATVNLSPGDPRWIGA
WWLGLLISSGFLIVTSLPFFFFPRAMSRGAERSVTAEETMKTEEDKSRGSLMDFIKRFPRIFLR
LLMNPLFMLVVLSQCTFSSVIAGLSTFLNKFLEKQYGATAAYANFLIGAVNLPAAALGMLFGGI
LMKRFVFPLQTIPRVAATIITISMILCVPLFFMGCSTSAVAEVYPPSTSSSIHPQQPPACRRDC
SCPDSFFHPVCGDNGVEYVSPCHAGCSSTNTSSEASKEPIYLNCSCVSGGSASAKTGSCPTSCA
QLLLPSIFLISFAALIACISHNPLYMMVLRVVNQDEKSFAIGVQFLLMRLLAWLPAPSLYGLLI
DSSCVRWNYLCSGRRGACAYYDNDALRNRYLGLQMVYKALGTLLLFFISWRMKKNREYSLQENT
SGLI

hide sequence

RefSeq Acc Id:	XP_006243717 ⟸ XM_006243655
- Peptide Label:	isoform X1
- UniProtKB:	Q00910 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MIGIGGLLLAAGAFVLTLPHFLSEPYQYTSTTDGNRSSFQTDLCQKHLPALPPSKCHSTVPDTH KETSSLWGLMVVAQLLAGIGTVPIQPFGISYVDDFAEPTNSPLYISILFAIAVFGPAFGYLLGS VMLRIFVDYGRVDTATVNLSPGDPRWIGAWWLGLLISSGFLIVTSLPFFFFPRAMSRGAERSVT AEETMKTEEDKSRGSLMDFIKRFPRIFLRLLMNPLFMLVVLSQCTFSSVIAGLSTFLNKFLEKQ YGATAAYANFLIGAVNLPAAALGMLFGGILMKRFVFPLQTIPRVAATIITISMILCVPLFFMGC STSAVAEVYPPSTSSSIHPQQPPACRRDCSCPDSFFHPVCGDNGVEYVSPCHAGCSSTNTSSEA SKEPIYLNCSCVSGGSASAKTGSCPTSCAQLLLPSIFLISFAALIACISHNPLYMMVLRVVNQD EKSFAIGVQFLLMRLLAWLPAPSLYGLLIDSSCVRWNYLCSGRRGACAYYDNDALRNRYLGLQM VYKALGTLLLFFISWRMKKNREYSLQENTSGLI hide sequence

Ensembl Acc Id:

ENSRNOP00000012162 ⟸ ENSRNOT00000012162

Ensembl Acc Id:

ENSRNOP00000069382 ⟸ ENSRNOT00000091275

RefSeq Acc Id:	XP_038936726 ⟸ XM_039080798
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000102290 ⟸ ENSRNOT00000164303

Ensembl Acc Id:

ENSRNOP00000110951 ⟸ ENSRNOT00000168642

Protein Domains

Kazal-like Major facilitator superfamily (MFS) profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q00910-F1-model_v2	AlphaFold	Q00910	1-644	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696227

Promoter ID:

EPDNEW_R6751

Type:

single initiation site

Name:

Slco2a1_1

Description:

solute carrier organic anion transporter family, member 2a1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	111,495,404 - 111,495,464	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3051	AgrOrtholog
BioCyc Gene	G2FUF-29338	BioCyc
Ensembl Genes	ENSRNOG00000009005	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000012162	ENTREZGENE
	ENSRNOT00000168642	ENTREZGENE
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot
	3.30.60.30	UniProtKB/Swiss-Prot
InterPro	Kazal_dom	UniProtKB/Swiss-Prot
	Kazal_dom_sf	UniProtKB/Swiss-Prot
	MFS_dom	UniProtKB/Swiss-Prot
	MFS_trans_sf	UniProtKB/Swiss-Prot
	OATP	UniProtKB/Swiss-Prot
NCBI Gene	24546	ENTREZGENE
PANTHER	PTHR11388	UniProtKB/Swiss-Prot
	SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 2A1	UniProtKB/Swiss-Prot
Pfam	Kazal_2	UniProtKB/Swiss-Prot
	OATP	UniProtKB/Swiss-Prot
PhenoGen	Slco2a1	PhenoGen
PROSITE	KAZAL_2	UniProtKB/Swiss-Prot
	MFS	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009005	RatGTEx
Superfamily-SCOP	SSF100895	UniProtKB/Swiss-Prot
	SSF103473	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV79	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LH90_RAT	UniProtKB/TrEMBL
	A0ABK0LZZ1_RAT	UniProtKB/TrEMBL
	A6I2I3	ENTREZGENE, UniProtKB/TrEMBL
	G3V753_RAT	UniProtKB/TrEMBL
	Q00910	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Slco2a1	solute carrier organic anion transporter family, member 2a1	Matr1	matrin F/G 1	Symbol and Name updated	1299863	APPROVED
2002-11-06	Matr1	matrin F/G 1		Matrin F/G	Name updated	625702	APPROVED
2002-06-10	Matr1	Matrin F/G			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	544 amino acids; 59.7 kDa	633269

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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