SLCO2A1 (solute carrier organic anion transporter family member 2A1) - Rat Genome Database

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Gene: SLCO2A1 (solute carrier organic anion transporter family member 2A1) Homo sapiens
Analyze
Symbol: SLCO2A1
Name: solute carrier organic anion transporter family member 2A1
RGD ID: 736966
HGNC Page HGNC:10955
Description: Predicted to enable prostaglandin transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Located in basal plasma membrane. Implicated in primary hypertrophic osteoarthropathy.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MATR1; matrin F/G 1; OATP2A1; PGT; PHOAD; PHOAR2; prostaglandin transporter; SLC21A2; solute carrier family 21 (prostaglandin transporter), member 2; solute carrier family 21 member 2; solute carrier organic anion transporter family, member 2A1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,932,701 - 134,029,925 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,932,701 - 134,052,184 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,651,545 - 133,748,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,134,230 - 135,231,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,134,239 - 135,231,426NCBI
Celera3132,077,395 - 132,174,290 (-)NCBICelera
Cytogenetic Map3q22.1-q22.2NCBI
HuRef3131,029,670 - 131,126,922 (-)NCBIHuRef
CHM1_13133,615,353 - 133,712,732 (-)NCBICHM1_1
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(S)-nicotine  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-methoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
atrazine  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
ciprofibrate  (ISO)
clofibrate  (ISO)
cyclosporin A  (EXP)
dexamethasone  (ISO)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (EXP)
diethyl maleate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
endosulfan  (ISO)
ethylparaben  (EXP)
flutamide  (ISO)
furan  (ISO)
genistein  (EXP,ISO)
indometacin  (EXP)
ketoprofen  (EXP)
lead diacetate  (ISO)
lumiracoxib  (EXP)
methotrexate  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mifepristone  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
naproxen  (EXP)
nefazodone  (ISO)
nicotine  (EXP)
nimesulide  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
permethrin  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (EXP,ISO)
prostaglandin E2  (EXP)
quercetin  (EXP)
resveratrol  (EXP)
rifampicin  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
spironolactone  (ISO)
sulforaphane  (EXP)
sunitinib  (EXP)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
triclosan  (EXP)
Triptolide  (ISO)
triptonide  (ISO)
tunicamycin  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zidovudine  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:8787677   PMID:9618293   PMID:9832484   PMID:12477932   PMID:14579113   PMID:15864125   PMID:16339169   PMID:16344560   PMID:17474147   PMID:18353443   PMID:18976975   PMID:19138942  
PMID:20346915   PMID:20357271   PMID:20424473   PMID:21873635   PMID:22060278   PMID:22197487   PMID:22331663   PMID:22553128   PMID:22696055   PMID:22906430   PMID:23509104   PMID:24153155  
PMID:24185079   PMID:24694755   PMID:24838973   PMID:24929850   PMID:25059581   PMID:25433165   PMID:25433169   PMID:25810087   PMID:26265282   PMID:26464663   PMID:26539716   PMID:26692285  
PMID:26850138   PMID:27134495   PMID:27336732   PMID:27467110   PMID:27681482   PMID:28602931   PMID:28783044   PMID:30400730   PMID:31004291   PMID:31196708   PMID:33166338   PMID:33397021  
PMID:33619025   PMID:35299026   PMID:35307651   PMID:35611666   PMID:35877192   PMID:36549465   PMID:36706979   PMID:36731680   PMID:36907595   PMID:37327083   PMID:37861627   PMID:37906648  
PMID:37915296  


Genomics

Comparative Map Data
SLCO2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,932,701 - 134,029,925 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,932,701 - 134,052,184 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,651,545 - 133,748,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,134,230 - 135,231,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,134,239 - 135,231,426NCBI
Celera3132,077,395 - 132,174,290 (-)NCBICelera
Cytogenetic Map3q22.1-q22.2NCBI
HuRef3131,029,670 - 131,126,922 (-)NCBIHuRef
CHM1_13133,615,353 - 133,712,732 (-)NCBICHM1_1
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBIT2T-CHM13v2.0
Slco2a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,885,686 - 102,973,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,865,911 - 102,973,201 (+)EnsemblGRCm39 Ensembl
GRCm389103,007,061 - 103,096,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,988,712 - 103,096,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv379102,910,819 - 102,990,179 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,866,770 - 102,944,916 (+)NCBIMGSCv36mm8
Celera9102,558,775 - 102,638,236 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.72NCBI
Slco2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,467,739 - 112,551,923 (+)NCBIGRCr8
mRatBN7.28103,588,916 - 103,672,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,588,916 - 103,672,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,252,126 - 109,332,029 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,451,296 - 107,531,195 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,293,972 - 105,373,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,495,443 - 111,577,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,495,331 - 111,577,833 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,886,314 - 110,968,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,012,829 - 108,098,561 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,032,283 - 108,118,016 (+)NCBI
Celera8102,966,792 - 103,051,202 (+)NCBICelera
Cytogenetic Map8q32NCBI
Slco2a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,543,194 - 4,625,715 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,544,065 - 4,623,615 (+)NCBIChiLan1.0ChiLan1.0
SLCO2A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,856,980 - 131,954,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,861,709 - 131,959,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,978,103 - 131,075,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,452,986 - 138,549,782 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,454,881 - 138,549,785 (-)Ensemblpanpan1.1panPan2
SLCO2A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,797,956 - 30,877,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,797,890 - 30,877,340 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,777,043 - 30,856,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,316,928 - 31,398,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,318,754 - 31,398,430 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12331,012,180 - 31,091,151 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02331,069,931 - 31,148,746 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,317,639 - 31,396,502 (-)NCBIUU_Cfam_GSD_1.0
Slco2a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,308,469 - 70,395,441 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365297,068,970 - 7,155,950 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365297,069,003 - 7,155,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO2A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,106,607 - 75,190,022 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,108,540 - 75,189,660 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,607,281 - 82,614,511 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21382,682,287 - 82,806,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO2A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,339,585 - 56,427,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,339,744 - 56,430,032 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,322,188 - 29,409,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco2a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,256,799 - 10,339,827 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,256,799 - 10,339,388 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLCO2A1
261 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_005630.3(SLCO2A1):c.830dup (p.Phe278fs) duplication Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030778] Chr3:133951238..133951239 [GRCh38]
Chr3:133670082..133670083 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.97-1G>A single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000023104] Chr3:133979619 [GRCh38]
Chr3:133698463 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1634del (p.Asn545fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000023106] Chr3:133938485 [GRCh38]
Chr3:133657329 [GRCh37]
Chr3:3q22.1
pathogenic
SLCO2A1, GLY222ARG variation Primary hypertrophic osteoarthropathy, autosomal recessive 2 [RCV000023107] Chr3:3q21 pathogenic
SLCO2A1, IVS7, G-A, +1 single nucleotide variant Primary hypertrophic osteoarthropathy, autosomal recessive 2 [RCV000023108] Chr3:3q21 pathogenic
NM_005630.3(SLCO2A1):c.861+2T>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527660]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642961] Chr3:133951206 [GRCh38]
Chr3:133670050 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.764G>A (p.Gly255Glu) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000023105] Chr3:133951305 [GRCh38]
Chr3:133670149 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.754C>T (p.Arg252Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642868] Chr3:133951315 [GRCh38]
Chr3:133670159 [GRCh37]
Chr3:3q22.1
pathogenic|uncertain significance
NM_005630.3(SLCO2A1):c.1259G>T (p.Cys420Phe) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030780]|not provided [RCV002223177] Chr3:133947292 [GRCh38]
Chr3:133666136 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.253A>T (p.Ile85Phe) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030781] Chr3:133973807 [GRCh38]
Chr3:133692651 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.310G>T (p.Gly104Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527661]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030782]|not provided [RCV002513277] Chr3:133973750 [GRCh38]
Chr3:133692594 [GRCh37]
Chr3:3q22.1
pathogenic
GRCh38/hg38 3q22.1-23(chr3:132690641-141064444)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051570]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051570]|See cases [RCV000051570] Chr3:132690641..141064444 [GRCh38]
Chr3:132409485..140783286 [GRCh37]
Chr3:133892175..142265976 [NCBI36]
Chr3:3q22.1-23
pathogenic
GRCh38/hg38 3q22.1-22.3(chr3:132972567-136894498)x1 copy number loss See cases [RCV000051571] Chr3:132972567..136894498 [GRCh38]
Chr3:132691411..136613340 [GRCh37]
Chr3:134174101..138096030 [NCBI36]
Chr3:3q22.1-22.3
pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q22.1-24(chr3:129817243-143381624)x1 copy number loss See cases [RCV000136558] Chr3:129817243..143381624 [GRCh38]
Chr3:129536086..143100466 [GRCh37]
Chr3:131018776..144583156 [NCBI36]
Chr3:3q22.1-24
pathogenic
GRCh38/hg38 3q22.1-23(chr3:130401265-139005019)x1 copy number loss See cases [RCV000139240] Chr3:130401265..139005019 [GRCh38]
Chr3:130120109..138723861 [GRCh37]
Chr3:131602799..140206551 [NCBI36]
Chr3:3q22.1-23
pathogenic
GRCh38/hg38 3q22.1-23(chr3:129817243-141425155)x1 copy number loss See cases [RCV000140995] Chr3:129817243..141425155 [GRCh38]
Chr3:129536086..141143997 [GRCh37]
Chr3:131018776..142626687 [NCBI36]
Chr3:3q22.1-23
pathogenic
GRCh38/hg38 3q21.3-23(chr3:126106779-140918089)x3 copy number gain See cases [RCV000142010] Chr3:126106779..140918089 [GRCh38]
Chr3:125825622..140636931 [GRCh37]
Chr3:127308312..142119621 [NCBI36]
Chr3:3q21.3-23
uncertain significance
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24
pathogenic
GRCh38/hg38 3q22.1-24(chr3:132716978-144784743)x1 copy number loss See cases [RCV000143634] Chr3:132716978..144784743 [GRCh38]
Chr3:132435822..144503585 [GRCh37]
Chr3:133918512..145986275 [NCBI36]
Chr3:3q22.1-24
pathogenic
NM_005630.3(SLCO2A1):c.1243T>C (p.Leu415=) single nucleotide variant not provided [RCV000958708] Chr3:133947308 [GRCh38]
Chr3:133666152 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1807C>T (p.Arg603Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527663]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000490280]|not provided [RCV002517444] Chr3:133935781 [GRCh38]
Chr3:133654625 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.940+1G>A single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000490351]|not provided [RCV001389437] Chr3:133948892 [GRCh38]
Chr3:133667736 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1279_1290del (p.Glu427_Pro430del) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000490458] Chr3:133947261..133947272 [GRCh38]
Chr3:133666105..133666116 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.664G>A (p.Gly222Arg) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527659]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000505666]|not provided [RCV002527331] Chr3:133953723 [GRCh38]
Chr3:133672567 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1084G>C (p.Ala362Pro) single nucleotide variant Inborn genetic diseases [RCV003250224]|SLCO2A1-related condition [RCV003973788] Chr3:133948557 [GRCh38]
Chr3:133667401 [GRCh37]
Chr3:3q22.1
likely benign|uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_005630.3(SLCO2A1):c.257T>C (p.Ile86Thr) single nucleotide variant Inborn genetic diseases [RCV003248081] Chr3:133973803 [GRCh38]
Chr3:133692647 [GRCh37]
Chr3:3q22.1
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q22.1-22.3(chr3:132642704-136360844)x1 copy number loss Intellectual disability, autosomal dominant 47 [RCV000680253] Chr3:132642704..136360844 [GRCh37]
Chr3:3q22.1-22.3
likely pathogenic
NM_005630.3(SLCO2A1):c.397+10T>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001810071]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001810070]|not provided [RCV001595091]|not specified [RCV001530003] Chr3:133973653 [GRCh38]
Chr3:133692497 [GRCh37]
Chr3:3q22.1
benign
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
Single allele deletion Deafness-lymphedema-leukemia syndrome [RCV001541925] Chr3:127966423..136853218 [GRCh37]
Chr3:3q21.3-22.3
pathogenic
NM_005630.3(SLCO2A1):c.309C>T (p.Ile103=) single nucleotide variant not provided [RCV000940544] Chr3:133973751 [GRCh38]
Chr3:133692595 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1626-295A>G single nucleotide variant not provided [RCV001708540] Chr3:133938788 [GRCh38]
Chr3:133657632 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.270C>G (p.Tyr90Ter) single nucleotide variant not provided [RCV000760766] Chr3:133973790 [GRCh38]
Chr3:133692634 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1186G>A (p.Ala396Thr) single nucleotide variant not provided [RCV001645187] Chr3:133947365 [GRCh38]
Chr3:133666209 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.495G>T (p.Glu165Asp) single nucleotide variant not provided [RCV000905080] Chr3:133955096 [GRCh38]
Chr3:133673940 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.618G>T (p.Leu206=) single nucleotide variant not provided [RCV000900714] Chr3:133954973 [GRCh38]
Chr3:133673817 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.855A>C (p.Gly285=) single nucleotide variant not provided [RCV000919949] Chr3:133951214 [GRCh38]
Chr3:133670058 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1691-5T>C single nucleotide variant not provided [RCV000892337] Chr3:133935902 [GRCh38]
Chr3:133654746 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.77C>T (p.Ser26Leu) single nucleotide variant SLCO2A1-related condition [RCV003910626]|not provided [RCV000892765] Chr3:134029726 [GRCh38]
Chr3:133748570 [GRCh37]
Chr3:3q22.2
benign|likely benign
NM_005630.3(SLCO2A1):c.1291C>A (p.Pro431Thr) single nucleotide variant SLCO2A1-related condition [RCV003955851]|not provided [RCV000882598] Chr3:133947260 [GRCh38]
Chr3:133666104 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1370C>T (p.Pro457Leu) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003316898] Chr3:133945186 [GRCh38]
Chr3:133664030 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.862-6C>T single nucleotide variant not provided [RCV000961476] Chr3:133948977 [GRCh38]
Chr3:133667821 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1755G>A (p.Ser585=) single nucleotide variant not provided [RCV000970825] Chr3:133935833 [GRCh38]
Chr3:133654677 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.657G>A (p.Pro219=) single nucleotide variant not provided [RCV000981812] Chr3:133953730 [GRCh38]
Chr3:133672574 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1020C>T (p.Ser340=) single nucleotide variant not provided [RCV000902786] Chr3:133948621 [GRCh38]
Chr3:133667465 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1288C>T (p.Pro430Ser) single nucleotide variant SLCO2A1-related condition [RCV003960553]|not provided [RCV000943095] Chr3:133947263 [GRCh38]
Chr3:133666107 [GRCh37]
Chr3:3q22.1
benign|likely benign
NM_005630.3(SLCO2A1):c.1657A>G (p.Ile553Val) single nucleotide variant not provided [RCV000908797] Chr3:133938462 [GRCh38]
Chr3:133657306 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1166G>A (p.Arg389His) single nucleotide variant not provided [RCV000903272] Chr3:133947385 [GRCh38]
Chr3:133666229 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.736T>C (p.Leu246=) single nucleotide variant not provided [RCV000940375] Chr3:133951333 [GRCh38]
Chr3:133670177 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1923C>T (p.Gly641=) single nucleotide variant not provided [RCV000962056] Chr3:133934722 [GRCh38]
Chr3:133653566 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1812C>T (p.Asp604=) single nucleotide variant not provided [RCV000919234] Chr3:133935776 [GRCh38]
Chr3:133654620 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.81C>G (p.Val27=) single nucleotide variant not provided [RCV000922205] Chr3:134029722 [GRCh38]
Chr3:133748566 [GRCh37]
Chr3:3q22.2
likely benign
NM_005630.3(SLCO2A1):c.1440C>T (p.Ser480=) single nucleotide variant not provided [RCV000976618] Chr3:133945116 [GRCh38]
Chr3:133663960 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.86del (p.Gly29fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001029816] Chr3:134029717 [GRCh38]
Chr3:133748561 [GRCh37]
Chr3:3q22.2
likely pathogenic
GRCh37/hg19 3q22.1(chr3:133588698-133662948)x3 copy number gain not provided [RCV000846541] Chr3:133588698..133662948 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.290G>A (p.Arg97His) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001198034] Chr3:133973770 [GRCh38]
Chr3:133692614 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.1691-105C>T single nucleotide variant not provided [RCV001533789] Chr3:133936002 [GRCh38]
Chr3:133654846 [GRCh37]
Chr3:3q22.1
benign
NC_000003.12:g.134030188C>G single nucleotide variant not provided [RCV001639879] Chr3:134030188 [GRCh38]
Chr3:133749032 [GRCh37]
Chr3:3q22.2
benign
NM_005630.3(SLCO2A1):c.235-74G>A single nucleotide variant not provided [RCV001669916] Chr3:133973899 [GRCh38]
Chr3:133692743 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1461+258T>C single nucleotide variant not provided [RCV001682610] Chr3:133944837 [GRCh38]
Chr3:133663681 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1625+97C>A single nucleotide variant not provided [RCV001724696] Chr3:133942508 [GRCh38]
Chr3:133661352 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.234+45G>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001810288]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001810287]|not provided [RCV001714936] Chr3:133979436 [GRCh38]
Chr3:133698280 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1333C>T (p.Arg445Cys) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001029821]|SLCO2A1-related condition [RCV003903257]|not provided [RCV000954250] Chr3:133945223 [GRCh38]
Chr3:133664067 [GRCh37]
Chr3:3q22.1
benign|likely benign|uncertain significance
NM_005630.3(SLCO2A1):c.174C>T (p.Thr58=) single nucleotide variant not provided [RCV000885306] Chr3:133979541 [GRCh38]
Chr3:133698385 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.573G>A (p.Gly191=) single nucleotide variant not provided [RCV000918832] Chr3:133955018 [GRCh38]
Chr3:133673862 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.672G>A (p.Leu224=) single nucleotide variant not provided [RCV000883774] Chr3:133953715 [GRCh38]
Chr3:133672559 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1581G>C (p.Leu527=) single nucleotide variant SLCO2A1-related condition [RCV003932931]|not provided [RCV000908104] Chr3:133942649 [GRCh38]
Chr3:133661493 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1797C>T (p.Asn599=) single nucleotide variant not provided [RCV000908695] Chr3:133935791 [GRCh38]
Chr3:133654635 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1905C>T (p.Asn635=) single nucleotide variant not provided [RCV000917398] Chr3:133934740 [GRCh38]
Chr3:133653584 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.484C>G (p.Pro162Ala) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001335307]|not provided [RCV000902042] Chr3:133955107 [GRCh38]
Chr3:133673951 [GRCh37]
Chr3:3q22.1
likely benign|uncertain significance
NM_005630.3(SLCO2A1):c.1385A>G (p.Asn462Ser) single nucleotide variant not provided [RCV000962985] Chr3:133945171 [GRCh38]
Chr3:133664015 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.682G>A (p.Val228Ile) single nucleotide variant SLCO2A1-related condition [RCV003923100]|not provided [RCV000907656] Chr3:133953705 [GRCh38]
Chr3:133672549 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.367G>A (p.Glu123Lys) single nucleotide variant SLCO2A1-related condition [RCV003923197]|not provided [RCV000913911] Chr3:133973693 [GRCh38]
Chr3:133692537 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1691-260C>T single nucleotide variant not provided [RCV001596539] Chr3:133936157 [GRCh38]
Chr3:133655001 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.234+1G>A single nucleotide variant not provided [RCV001561613] Chr3:133979480 [GRCh38]
Chr3:133698324 [GRCh37]
Chr3:3q22.1
likely pathogenic
GRCh37/hg19 3q13.31-26.31(chr3:116620308-172042292)x3 copy number gain not provided [RCV002472621] Chr3:116620308..172042292 [GRCh37]
Chr3:3q13.31-26.31
pathogenic
NM_005630.3(SLCO2A1):c.1461+105AC[6] microsatellite not provided [RCV001650177] Chr3:133944980..133944981 [GRCh38]
Chr3:133663824..133663825 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1237_1246del (p.Val413fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001533517] Chr3:133947305..133947314 [GRCh38]
Chr3:133666149..133666158 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.397+314A>C single nucleotide variant not provided [RCV001667269] Chr3:133973349 [GRCh38]
Chr3:133692193 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.840A>G (p.Arg280=) single nucleotide variant not provided [RCV001652196] Chr3:133951229 [GRCh38]
Chr3:133670073 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.725-203T>G single nucleotide variant not provided [RCV001649865] Chr3:133951547 [GRCh38]
Chr3:133670391 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.96+218GT[10] microsatellite not provided [RCV001651843] Chr3:134029473..134029474 [GRCh38]
Chr3:133748317..133748318 [GRCh37]
Chr3:3q22.2
benign
NM_005630.3(SLCO2A1):c.940+91G>A single nucleotide variant not provided [RCV001714044] Chr3:133948802 [GRCh38]
Chr3:133667646 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1106-1G>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001029822] Chr3:133947446 [GRCh38]
Chr3:133666290 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.1524del (p.Val509fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001255883] Chr3:133942706 [GRCh38]
Chr3:133661550 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.547G>A (p.Gly183Arg) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001255886]|not provided [RCV001879945] Chr3:133955044 [GRCh38]
Chr3:133673888 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.830del (p.Phe277fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001255885] Chr3:133951239 [GRCh38]
Chr3:133670083 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.725-37A>G single nucleotide variant not provided [RCV001641986] Chr3:133951381 [GRCh38]
Chr3:133670225 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.398-5T>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001255884] Chr3:133955198 [GRCh38]
Chr3:133674042 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1931G>C (p.Ter644Ser) single nucleotide variant not provided [RCV001957827] Chr3:133934714 [GRCh38]
Chr3:133653558 [GRCh37]
Chr3:3q22.1
pathogenic|uncertain significance
NM_005630.3(SLCO2A1):c.621C>A (p.Tyr207Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001527664] Chr3:133954970 [GRCh38]
Chr3:133673814 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1660G>A (p.Gly554Arg) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527665]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001527666]|not provided [RCV003558833] Chr3:133938459 [GRCh38]
Chr3:133657303 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.1814+1G>A single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001527667] Chr3:133935773 [GRCh38]
Chr3:133654617 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.614C>T (p.Pro205Leu) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001533515] Chr3:133954977 [GRCh38]
Chr3:133673821 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.529C>T (p.Gln177Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV001533516] Chr3:133955062 [GRCh38]
Chr3:133673906 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.302T>G (p.Ile101Ser) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527662] Chr3:133973758 [GRCh38]
Chr3:133692602 [GRCh37]
Chr3:3q22.1
pathogenic
NC_000003.12:g.134030326T>G single nucleotide variant not provided [RCV001652110] Chr3:134030326 [GRCh38]
Chr3:133749170 [GRCh37]
Chr3:3q22.2
benign
NM_005630.3(SLCO2A1):c.1106-214G>A single nucleotide variant not provided [RCV001655129] Chr3:133947659 [GRCh38]
Chr3:133666503 [GRCh37]
Chr3:3q22.1
benign
NC_000003.12:g.134029945T>C single nucleotide variant not provided [RCV001708915] Chr3:134029945 [GRCh38]
Chr3:133748789 [GRCh37]
Chr3:3q22.2
benign
NM_005630.3(SLCO2A1):c.834C>T (p.Phe278=) single nucleotide variant not provided [RCV003108733] Chr3:133951235 [GRCh38]
Chr3:133670079 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1370C>G (p.Pro457Arg) single nucleotide variant not provided [RCV001755458] Chr3:133945186 [GRCh38]
Chr3:133664030 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1625G>A (p.Arg542His) single nucleotide variant not provided [RCV001757464] Chr3:133942605 [GRCh38]
Chr3:133661449 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.744G>A (p.Pro248=) single nucleotide variant not provided [RCV001964269] Chr3:133951325 [GRCh38]
Chr3:133670169 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1279G>A (p.Glu427Lys) single nucleotide variant not provided [RCV001970772] Chr3:133947272 [GRCh38]
Chr3:133666116 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1516T>A (p.Ser506Thr) single nucleotide variant not provided [RCV001929602] Chr3:133942714 [GRCh38]
Chr3:133661558 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.640A>T (p.Ile214Phe) single nucleotide variant not provided [RCV002025283] Chr3:133953747 [GRCh38]
Chr3:133672591 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.74G>T (p.Arg25Leu) single nucleotide variant not provided [RCV002022257] Chr3:134029729 [GRCh38]
Chr3:133748573 [GRCh37]
Chr3:3q22.2
uncertain significance
NM_005630.3(SLCO2A1):c.1291C>G (p.Pro431Ala) single nucleotide variant not provided [RCV001988014] Chr3:133947260 [GRCh38]
Chr3:133666104 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.398-9T>G single nucleotide variant not provided [RCV002008505] Chr3:133955202 [GRCh38]
Chr3:133674046 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.332G>A (p.Gly111Asp) single nucleotide variant not provided [RCV001914142] Chr3:133973728 [GRCh38]
Chr3:133692572 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1755G>T (p.Ser585=) single nucleotide variant not provided [RCV001983116] Chr3:133935833 [GRCh38]
Chr3:133654677 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.234G>A (p.Glu78=) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV002052131] Chr3:133979481 [GRCh38]
Chr3:133698325 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1154T>C (p.Ile385Thr) single nucleotide variant not provided [RCV001968412] Chr3:133947397 [GRCh38]
Chr3:133666241 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1783G>A (p.Ala595Thr) single nucleotide variant not provided [RCV001946204] Chr3:133935805 [GRCh38]
Chr3:133654649 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1166G>T (p.Arg389Leu) single nucleotide variant not provided [RCV002024037] Chr3:133947385 [GRCh38]
Chr3:133666229 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1798G>A (p.Asp600Asn) single nucleotide variant not provided [RCV001928837] Chr3:133935790 [GRCh38]
Chr3:133654634 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1196G>A (p.Arg399His) single nucleotide variant not provided [RCV001946082] Chr3:133947355 [GRCh38]
Chr3:133666199 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.133C>T (p.Gln45Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV002052072] Chr3:133979582 [GRCh38]
Chr3:133698426 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.310G>A (p.Gly104Arg) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642981]|not provided [RCV002042148] Chr3:133973750 [GRCh38]
Chr3:133692594 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic|uncertain significance
NM_005630.3(SLCO2A1):c.295C>T (p.Arg99Cys) single nucleotide variant not provided [RCV001909705] Chr3:133973765 [GRCh38]
Chr3:133692609 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.572G>C (p.Gly191Ala) single nucleotide variant not provided [RCV001996774] Chr3:133955019 [GRCh38]
Chr3:133673863 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1115A>G (p.Asn372Ser) single nucleotide variant not provided [RCV001888044] Chr3:133947436 [GRCh38]
Chr3:133666280 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1837T>C (p.Tyr613His) single nucleotide variant not provided [RCV001992509] Chr3:133934808 [GRCh38]
Chr3:133653652 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.185G>A (p.Arg62His) single nucleotide variant not provided [RCV002028599] Chr3:133979530 [GRCh38]
Chr3:133698374 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.209C>T (p.Ser70Leu) single nucleotide variant not provided [RCV002029896] Chr3:133979506 [GRCh38]
Chr3:133698350 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1844C>T (p.Ala615Val) single nucleotide variant not provided [RCV001887500] Chr3:133934801 [GRCh38]
Chr3:133653645 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1690+6T>C single nucleotide variant not provided [RCV001897426] Chr3:133938423 [GRCh38]
Chr3:133657267 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1815-2A>T single nucleotide variant not provided [RCV002000667] Chr3:133934832 [GRCh38]
Chr3:133653676 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1691-10C>A single nucleotide variant not provided [RCV001989847] Chr3:133935907 [GRCh38]
Chr3:133654751 [GRCh37]
Chr3:3q22.1
likely benign|uncertain significance
NM_005630.3(SLCO2A1):c.1264_1265del (p.Thr422fs) deletion not provided [RCV001937176] Chr3:133947286..133947287 [GRCh38]
Chr3:133666130..133666131 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1165C>T (p.Arg389Cys) single nucleotide variant not provided [RCV001952216] Chr3:133947386 [GRCh38]
Chr3:133666230 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.409C>T (p.Arg137Cys) single nucleotide variant not provided [RCV001936024] Chr3:133955182 [GRCh38]
Chr3:133674026 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.941-10C>A single nucleotide variant not provided [RCV001996101] Chr3:133948710 [GRCh38]
Chr3:133667554 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1808G>C (p.Arg603Pro) single nucleotide variant not provided [RCV001930956] Chr3:133935780 [GRCh38]
Chr3:133654624 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1718G>T (p.Gly573Val) single nucleotide variant not provided [RCV001995724] Chr3:133935870 [GRCh38]
Chr3:133654714 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.940C>T (p.Arg314Trp) single nucleotide variant not provided [RCV001905342] Chr3:133948893 [GRCh38]
Chr3:133667737 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1624C>T (p.Arg542Cys) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642982]|not provided [RCV001973193] Chr3:133942606 [GRCh38]
Chr3:133661450 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.750C>A (p.Asp250Glu) single nucleotide variant not provided [RCV001959389] Chr3:133951319 [GRCh38]
Chr3:133670163 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.281G>A (p.Arg94Gln) single nucleotide variant not provided [RCV002047892] Chr3:133973779 [GRCh38]
Chr3:133692623 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.904G>C (p.Ala302Pro) single nucleotide variant not provided [RCV002030634] Chr3:133948929 [GRCh38]
Chr3:133667773 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1106G>A (p.Gly369Asp) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642983]|not provided [RCV001998798] Chr3:133947445 [GRCh38]
Chr3:133666289 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.1742T>G (p.Ile581Ser) single nucleotide variant not provided [RCV001955397] Chr3:133935846 [GRCh38]
Chr3:133654690 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.402C>A (p.Asn134Lys) single nucleotide variant not provided [RCV001870477] Chr3:133955189 [GRCh38]
Chr3:133674033 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1316C>T (p.Pro439Leu) single nucleotide variant not provided [RCV002027240] Chr3:133945240 [GRCh38]
Chr3:133664084 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1625+6T>C single nucleotide variant not provided [RCV001937572] Chr3:133942599 [GRCh38]
Chr3:133661443 [GRCh37]
Chr3:3q22.1
likely pathogenic|uncertain significance
NM_005630.3(SLCO2A1):c.619T>C (p.Tyr207His) single nucleotide variant not provided [RCV001993083] Chr3:133954972 [GRCh38]
Chr3:133673816 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1462-9C>T single nucleotide variant not provided [RCV002186131] Chr3:133942777 [GRCh38]
Chr3:133661621 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.12G>A (p.Leu4=) single nucleotide variant not provided [RCV002071804] Chr3:134029791 [GRCh38]
Chr3:133748635 [GRCh37]
Chr3:3q22.2
likely benign
NM_005630.3(SLCO2A1):c.1815-111A>G single nucleotide variant not provided [RCV002223634] Chr3:133934941 [GRCh38]
Chr3:133653785 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.847C>T (p.Pro283Ser) single nucleotide variant SLCO2A1-related condition [RCV003903349]|not provided [RCV002107719] Chr3:133951222 [GRCh38]
Chr3:133670066 [GRCh37]
Chr3:3q22.1
benign|likely benign
NM_005630.3(SLCO2A1):c.1434C>A (p.Asn478Lys) single nucleotide variant not provided [RCV002089612] Chr3:133945122 [GRCh38]
Chr3:133663966 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1041C>G (p.Thr347=) single nucleotide variant not provided [RCV002092307] Chr3:133948600 [GRCh38]
Chr3:133667444 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.366C>T (p.Ser122=) single nucleotide variant not provided [RCV002085446] Chr3:133973694 [GRCh38]
Chr3:133692538 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1551G>A (p.Pro517=) single nucleotide variant not provided [RCV002166319] Chr3:133942679 [GRCh38]
Chr3:133661523 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1782C>T (p.Cys594=) single nucleotide variant not provided [RCV002151286] Chr3:133935806 [GRCh38]
Chr3:133654650 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1815-14C>T single nucleotide variant not provided [RCV002169154] Chr3:133934844 [GRCh38]
Chr3:133653688 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.744G>C (p.Pro248=) single nucleotide variant not provided [RCV002080984] Chr3:133951325 [GRCh38]
Chr3:133670169 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.798T>G (p.Ala266=) single nucleotide variant not provided [RCV002091682] Chr3:133951271 [GRCh38]
Chr3:133670115 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1371G>C (p.Pro457=) single nucleotide variant not provided [RCV002115411] Chr3:133945185 [GRCh38]
Chr3:133664029 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.97-7C>T single nucleotide variant not provided [RCV002151681] Chr3:133979625 [GRCh38]
Chr3:133698469 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1815-11C>T single nucleotide variant not provided [RCV002205744] Chr3:133934841 [GRCh38]
Chr3:133653685 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.398-7G>A single nucleotide variant not provided [RCV002078125] Chr3:133955200 [GRCh38]
Chr3:133674044 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.978A>G (p.Ser326=) single nucleotide variant not provided [RCV002149016] Chr3:133948663 [GRCh38]
Chr3:133667507 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.235-18C>T single nucleotide variant not provided [RCV002150773] Chr3:133973843 [GRCh38]
Chr3:133692687 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1299A>G (p.Thr433=) single nucleotide variant not provided [RCV002078486] Chr3:133945257 [GRCh38]
Chr3:133664101 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.625+8A>G single nucleotide variant not provided [RCV002170991] Chr3:133954958 [GRCh38]
Chr3:133673802 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.12G>T (p.Leu4=) single nucleotide variant not provided [RCV002185723] Chr3:134029791 [GRCh38]
Chr3:133748635 [GRCh37]
Chr3:3q22.2
likely benign
NM_005630.3(SLCO2A1):c.862-16C>A single nucleotide variant not provided [RCV002128624] Chr3:133948987 [GRCh38]
Chr3:133667831 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.724+7A>G single nucleotide variant not provided [RCV002139291] Chr3:133953656 [GRCh38]
Chr3:133672500 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1814+11A>T single nucleotide variant not provided [RCV002219913] Chr3:133935763 [GRCh38]
Chr3:133654607 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1498G>A (p.Ala500Thr) single nucleotide variant not provided [RCV002083477] Chr3:133942732 [GRCh38]
Chr3:133661576 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.663C>T (p.Phe221=) single nucleotide variant not provided [RCV002143023] Chr3:133953724 [GRCh38]
Chr3:133672568 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1625+17T>C single nucleotide variant not provided [RCV002199538] Chr3:133942588 [GRCh38]
Chr3:133661432 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1672T>C (p.Leu558=) single nucleotide variant not provided [RCV002177733] Chr3:133938447 [GRCh38]
Chr3:133657291 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1814+7G>A single nucleotide variant not provided [RCV002217126] Chr3:133935767 [GRCh38]
Chr3:133654611 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1296-16C>T single nucleotide variant not provided [RCV002098920] Chr3:133945276 [GRCh38]
Chr3:133664120 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.398-17A>G single nucleotide variant not provided [RCV002158881] Chr3:133955210 [GRCh38]
Chr3:133674054 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.210G>A (p.Ser70=) single nucleotide variant not provided [RCV002217650] Chr3:133979505 [GRCh38]
Chr3:133698349 [GRCh37]
Chr3:3q22.1
benign
NC_000003.11:g.(?_133661429)_(133698482_?)dup duplication not provided [RCV003116405] Chr3:133661429..133698482 [GRCh37]
Chr3:3q22.1
likely pathogenic
NC_000003.11:g.(?_133653557)_(133674057_?)dup duplication not provided [RCV003116406] Chr3:133653557..133674057 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1509G>T (p.Lys503Asn) single nucleotide variant not provided [RCV003112480] Chr3:133942721 [GRCh38]
Chr3:133661565 [GRCh37]
Chr3:3q22.1
conflicting interpretations of pathogenicity|uncertain significance
NM_005630.3(SLCO2A1):c.1282G>T (p.Val428Phe) single nucleotide variant not provided [RCV003118538] Chr3:133947269 [GRCh38]
Chr3:133666113 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1371G>A (p.Pro457=) single nucleotide variant not provided [RCV003120010] Chr3:133945185 [GRCh38]
Chr3:133664029 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1162A>G (p.Lys388Glu) single nucleotide variant not provided [RCV002303813] Chr3:133947389 [GRCh38]
Chr3:133666233 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1873A>T (p.Ser625Cys) single nucleotide variant not provided [RCV002299887] Chr3:133934772 [GRCh38]
Chr3:133653616 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1382A>G (p.Asp461Gly) single nucleotide variant not provided [RCV002296026] Chr3:133945174 [GRCh38]
Chr3:133664018 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1745G>A (p.Arg582Gln) single nucleotide variant not provided [RCV002903382] Chr3:133935843 [GRCh38]
Chr3:133654687 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1768del (p.Arg590fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003776900]|not provided [RCV002774969] Chr3:133935820 [GRCh38]
Chr3:133654664 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.651T>C (p.Phe217=) single nucleotide variant not provided [RCV002615470] Chr3:133953736 [GRCh38]
Chr3:133672580 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.398-14C>T single nucleotide variant not provided [RCV002681555] Chr3:133955207 [GRCh38]
Chr3:133674051 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.964C>T (p.Leu322Phe) single nucleotide variant Inborn genetic diseases [RCV002865202] Chr3:133948677 [GRCh38]
Chr3:133667521 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1476C>T (p.Cys492=) single nucleotide variant not provided [RCV002838364] Chr3:133942754 [GRCh38]
Chr3:133661598 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1205C>T (p.Thr402Ile) single nucleotide variant Inborn genetic diseases [RCV002732396] Chr3:133947346 [GRCh38]
Chr3:133666190 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.56G>C (p.Arg19Pro) single nucleotide variant Inborn genetic diseases [RCV002689690] Chr3:134029747 [GRCh38]
Chr3:133748591 [GRCh37]
Chr3:3q22.2
uncertain significance
NM_005630.3(SLCO2A1):c.878C>T (p.Ala293Val) single nucleotide variant Inborn genetic diseases [RCV002777560] Chr3:133948955 [GRCh38]
Chr3:133667799 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.356A>G (p.His119Arg) single nucleotide variant not provided [RCV002780942] Chr3:133973704 [GRCh38]
Chr3:133692548 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1615A>G (p.Met539Val) single nucleotide variant not provided [RCV002948842] Chr3:133942615 [GRCh38]
Chr3:133661459 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.63C>T (p.Gly21=) single nucleotide variant not provided [RCV002570008] Chr3:134029740 [GRCh38]
Chr3:133748584 [GRCh37]
Chr3:3q22.2
likely benign
NM_005630.3(SLCO2A1):c.1345T>C (p.Ser449Pro) single nucleotide variant not provided [RCV003053715] Chr3:133945211 [GRCh38]
Chr3:133664055 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1728T>A (p.Ile576=) single nucleotide variant not provided [RCV002824727] Chr3:133935860 [GRCh38]
Chr3:133654704 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1626-17C>G single nucleotide variant not provided [RCV002570902] Chr3:133938510 [GRCh38]
Chr3:133657354 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1845G>A (p.Ala615=) single nucleotide variant not provided [RCV002592338] Chr3:133934800 [GRCh38]
Chr3:133653644 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1799A>T (p.Asp600Val) single nucleotide variant not provided [RCV002694893] Chr3:133935789 [GRCh38]
Chr3:133654633 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.941-14C>T single nucleotide variant not provided [RCV002569728] Chr3:133948714 [GRCh38]
Chr3:133667558 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1550C>T (p.Pro517Leu) single nucleotide variant Inborn genetic diseases [RCV002980607]|not provided [RCV003108206] Chr3:133942680 [GRCh38]
Chr3:133661524 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.817T>C (p.Phe273Leu) single nucleotide variant not provided [RCV002619512] Chr3:133951252 [GRCh38]
Chr3:133670096 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.517A>C (p.Met173Leu) single nucleotide variant not provided [RCV002706701] Chr3:133955074 [GRCh38]
Chr3:133673918 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.456C>T (p.Pro152=) single nucleotide variant not provided [RCV003042621] Chr3:133955135 [GRCh38]
Chr3:133673979 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1851C>G (p.Gly617=) single nucleotide variant not provided [RCV003056420] Chr3:133934794 [GRCh38]
Chr3:133653638 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.184C>T (p.Arg62Cys) single nucleotide variant not provided [RCV002595455] Chr3:133979531 [GRCh38]
Chr3:133698375 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.23G>A (p.Gly8Asp) single nucleotide variant not provided [RCV002957369] Chr3:134029780 [GRCh38]
Chr3:133748624 [GRCh37]
Chr3:3q22.2
uncertain significance
NM_005630.3(SLCO2A1):c.1537C>G (p.His513Asp) single nucleotide variant Inborn genetic diseases [RCV003269217]|not provided [RCV002625991] Chr3:133942693 [GRCh38]
Chr3:133661537 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.602C>T (p.Pro201Leu) single nucleotide variant not provided [RCV002593639] Chr3:133954989 [GRCh38]
Chr3:133673833 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.398-8C>T single nucleotide variant not provided [RCV002573747] Chr3:133955201 [GRCh38]
Chr3:133674045 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1417G>A (p.Gly473Ser) single nucleotide variant not provided [RCV002573789] Chr3:133945139 [GRCh38]
Chr3:133663983 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1489G>A (p.Gly497Arg) single nucleotide variant not provided [RCV002593564] Chr3:133942741 [GRCh38]
Chr3:133661585 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.570T>G (p.Phe190Leu) single nucleotide variant not provided [RCV002982788] Chr3:133955021 [GRCh38]
Chr3:133673865 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1373T>C (p.Val458Ala) single nucleotide variant not provided [RCV002928462] Chr3:133945183 [GRCh38]
Chr3:133664027 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.96+7G>T single nucleotide variant not provided [RCV002894465] Chr3:134029700 [GRCh38]
Chr3:133748544 [GRCh37]
Chr3:3q22.2
likely benign
NM_005630.3(SLCO2A1):c.1573G>A (p.Val525Met) single nucleotide variant not provided [RCV002623513] Chr3:133942657 [GRCh38]
Chr3:133661501 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1021G>A (p.Val341Ile) single nucleotide variant not provided [RCV003085418] Chr3:133948620 [GRCh38]
Chr3:133667464 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.941-13G>A single nucleotide variant not provided [RCV002786627] Chr3:133948713 [GRCh38]
Chr3:133667557 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.823T>A (p.Phe275Ile) single nucleotide variant Inborn genetic diseases [RCV003250526]|not provided [RCV002596792] Chr3:133951246 [GRCh38]
Chr3:133670090 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.943T>C (p.Phe315Leu) single nucleotide variant not provided [RCV002811348] Chr3:133948698 [GRCh38]
Chr3:133667542 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.896T>C (p.Leu299Ser) single nucleotide variant not provided [RCV003049035] Chr3:133948937 [GRCh38]
Chr3:133667781 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1488C>T (p.Thr496=) single nucleotide variant not provided [RCV002602900] Chr3:133942742 [GRCh38]
Chr3:133661586 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1291C>T (p.Pro431Ser) single nucleotide variant not provided [RCV003091603] Chr3:133947260 [GRCh38]
Chr3:133666104 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.626-15T>A single nucleotide variant not provided [RCV002580566] Chr3:133953776 [GRCh38]
Chr3:133672620 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.379T>C (p.Tyr127His) single nucleotide variant Inborn genetic diseases [RCV002668491] Chr3:133973681 [GRCh38]
Chr3:133692525 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.473C>A (p.Thr158Asn) single nucleotide variant Inborn genetic diseases [RCV002855120] Chr3:133955118 [GRCh38]
Chr3:133673962 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1542C>T (p.Phe514=) single nucleotide variant not provided [RCV002746390] Chr3:133942688 [GRCh38]
Chr3:133661532 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.538G>T (p.Ala180Ser) single nucleotide variant Inborn genetic diseases [RCV002920780] Chr3:133955053 [GRCh38]
Chr3:133673897 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1771C>T (p.Arg591Ter) single nucleotide variant not provided [RCV002651747] Chr3:133935817 [GRCh38]
Chr3:133654661 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.743C>T (p.Pro248Leu) single nucleotide variant Inborn genetic diseases [RCV003308376]|not provided [RCV002961932] Chr3:133951326 [GRCh38]
Chr3:133670170 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.842C>T (p.Ala281Val) single nucleotide variant not provided [RCV002631921] Chr3:133951227 [GRCh38]
Chr3:133670071 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.226T>C (p.Leu76=) single nucleotide variant not provided [RCV003091459] Chr3:133979489 [GRCh38]
Chr3:133698333 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1815-17CCT[2] microsatellite not provided [RCV002676056] Chr3:133934839..133934841 [GRCh38]
Chr3:133653683..133653685 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.234+19T>C single nucleotide variant not provided [RCV002899527] Chr3:133979462 [GRCh38]
Chr3:133698306 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.97-3C>T single nucleotide variant not provided [RCV002942720] Chr3:133979621 [GRCh38]
Chr3:133698465 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.159G>A (p.Lys53=) single nucleotide variant not provided [RCV002726152] Chr3:133979556 [GRCh38]
Chr3:133698400 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.392G>A (p.Ser131Asn) single nucleotide variant not provided [RCV002609856] Chr3:133973668 [GRCh38]
Chr3:133692512 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1815-15T>G single nucleotide variant not provided [RCV002589105] Chr3:133934845 [GRCh38]
Chr3:133653689 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.626-17C>T single nucleotide variant not provided [RCV003852667] Chr3:133953778 [GRCh38]
Chr3:133672622 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.289C>T (p.Arg97Cys) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003229536] Chr3:133973771 [GRCh38]
Chr3:133692615 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.234+5G>A single nucleotide variant not provided [RCV003136860] Chr3:133979476 [GRCh38]
Chr3:133698320 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.1772G>A (p.Arg591Gln) single nucleotide variant Inborn genetic diseases [RCV003176074] Chr3:133935816 [GRCh38]
Chr3:133654660 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.659C>T (p.Ala220Val) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003447863] Chr3:133953728 [GRCh38]
Chr3:133672572 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.83_96+8del deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003389097] Chr3:134029699..134029720 [GRCh38]
Chr3:133748543..133748564 [GRCh37]
Chr3:3q22.2
likely pathogenic
NM_005630.3(SLCO2A1):c.663del (p.Phe221fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003447855] Chr3:133953724 [GRCh38]
Chr3:133672568 [GRCh37]
Chr3:3q22.1
likely pathogenic
NM_005630.3(SLCO2A1):c.1295+20G>C single nucleotide variant not provided [RCV003579292] Chr3:133947236 [GRCh38]
Chr3:133666080 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.421G>T (p.Glu141Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643500] Chr3:133955170 [GRCh38]
Chr3:133674014 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1668G>C (p.Gln556His) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643507] Chr3:133938451 [GRCh38]
Chr3:133657295 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.763G>A (p.Gly255Arg) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643508] Chr3:133951306 [GRCh38]
Chr3:133670150 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1372G>T (p.Val458Phe) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643511] Chr3:133945184 [GRCh38]
Chr3:133664028 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.625+11G>A single nucleotide variant not provided [RCV003880164] Chr3:133954955 [GRCh38]
Chr3:133673799 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.234+8G>A single nucleotide variant not provided [RCV003578615] Chr3:133979473 [GRCh38]
Chr3:133698317 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1296-20G>A single nucleotide variant not provided [RCV003849105] Chr3:133945280 [GRCh38]
Chr3:133664124 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.626-5del deletion not provided [RCV003694348] Chr3:133953766 [GRCh38]
Chr3:133672610 [GRCh37]
Chr3:3q22.1
benign
NM_005630.3(SLCO2A1):c.1497dup (p.Ala500fs) duplication not provided [RCV003545150] Chr3:133942732..133942733 [GRCh38]
Chr3:133661576..133661577 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.234+17G>T single nucleotide variant not provided [RCV003877292] Chr3:133979464 [GRCh38]
Chr3:133698308 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1106-1G>A single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643501] Chr3:133947446 [GRCh38]
Chr3:133666290 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.794del (p.Ser264_Ser265insTer) deletion not provided [RCV003876329] Chr3:133951275 [GRCh38]
Chr3:133670119 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.336C>T (p.Ala112=) single nucleotide variant not provided [RCV003579095] Chr3:133973724 [GRCh38]
Chr3:133692568 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.625+10C>T single nucleotide variant not provided [RCV003828922] Chr3:133954956 [GRCh38]
Chr3:133673800 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.178G>A (p.Glu60Lys) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643502] Chr3:133979537 [GRCh38]
Chr3:133698381 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.759G>A (p.Trp253Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643503] Chr3:133951310 [GRCh38]
Chr3:133670154 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.855del (p.Ala286fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643509] Chr3:133951214 [GRCh38]
Chr3:133670058 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.440G>A (p.Trp147Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643504] Chr3:133955151 [GRCh38]
Chr3:133673995 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1095C>A (p.Asn365Lys) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643505] Chr3:133948546 [GRCh38]
Chr3:133667390 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1461+1G>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003643510] Chr3:133945094 [GRCh38]
Chr3:133663938 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1767G>A (p.Gly589=) single nucleotide variant not provided [RCV003828187] Chr3:133935821 [GRCh38]
Chr3:133654665 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.120C>T (p.Leu40=) single nucleotide variant not provided [RCV003852355] Chr3:133979595 [GRCh38]
Chr3:133698439 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.900G>A (p.Glu300=) single nucleotide variant not provided [RCV003698370] Chr3:133948933 [GRCh38]
Chr3:133667777 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.546C>T (p.Ile182=) single nucleotide variant not provided [RCV003726425] Chr3:133955045 [GRCh38]
Chr3:133673889 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1917G>A (p.Ala639=) single nucleotide variant not provided [RCV003548793] Chr3:133934728 [GRCh38]
Chr3:133653572 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1625+8G>C single nucleotide variant not provided [RCV003855785] Chr3:133942597 [GRCh38]
Chr3:133661441 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1827G>A (p.Leu609=) single nucleotide variant not provided [RCV003851454] Chr3:133934818 [GRCh38]
Chr3:133653662 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.582T>C (p.Tyr194=) single nucleotide variant not provided [RCV003665654] Chr3:133955009 [GRCh38]
Chr3:133673853 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1347G>A (p.Ser449=) single nucleotide variant not provided [RCV003815827] Chr3:133945209 [GRCh38]
Chr3:133664053 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.861+13G>C single nucleotide variant not provided [RCV003680026] Chr3:133951195 [GRCh38]
Chr3:133670039 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.645T>G (p.Ser215=) single nucleotide variant not provided [RCV003708048] Chr3:133953742 [GRCh38]
Chr3:133672586 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.147C>T (p.Ser49=) single nucleotide variant not provided [RCV003844127] Chr3:133979568 [GRCh38]
Chr3:133698412 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.918C>T (p.Gly306=) single nucleotide variant not provided [RCV003709983] Chr3:133948915 [GRCh38]
Chr3:133667759 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.139C>G (p.Leu47Val) single nucleotide variant not provided [RCV003568186] Chr3:133979576 [GRCh38]
Chr3:133698420 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_005630.3(SLCO2A1):c.626-4C>T single nucleotide variant not provided [RCV003847407] Chr3:133953765 [GRCh38]
Chr3:133672609 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1296-17dup duplication not provided [RCV003819178] Chr3:133945276..133945277 [GRCh38]
Chr3:133664120..133664121 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1497C>T (p.Ser499=) single nucleotide variant not provided [RCV003553250] Chr3:133942733 [GRCh38]
Chr3:133661577 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.862-4T>C single nucleotide variant not provided [RCV003720439] Chr3:133948975 [GRCh38]
Chr3:133667819 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.724+8T>C single nucleotide variant not provided [RCV003857769] Chr3:133953655 [GRCh38]
Chr3:133672499 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.732T>C (p.Val244=) single nucleotide variant not provided [RCV003681930] Chr3:133951337 [GRCh38]
Chr3:133670181 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1572C>T (p.Phe524=) single nucleotide variant not provided [RCV003728136] Chr3:133942658 [GRCh38]
Chr3:133661502 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1899G>A (p.Glu633=) single nucleotide variant not provided [RCV003554100] Chr3:133934746 [GRCh38]
Chr3:133653590 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.873C>T (p.Ala291=) single nucleotide variant not provided [RCV003732396] Chr3:133948960 [GRCh38]
Chr3:133667804 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.102T>C (p.Phe34=) single nucleotide variant not provided [RCV003678438] Chr3:133979613 [GRCh38]
Chr3:133698457 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.1278C>T (p.Ala426=) single nucleotide variant SLCO2A1-related condition [RCV003954371] Chr3:133947273 [GRCh38]
Chr3:133666117 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.126G>A (p.Gln42=) single nucleotide variant SLCO2A1-related condition [RCV003911936] Chr3:133979589 [GRCh38]
Chr3:133698433 [GRCh37]
Chr3:3q22.1
likely benign
NM_005630.3(SLCO2A1):c.252C>T (p.Leu84=) single nucleotide variant SLCO2A1-related condition [RCV003961429] Chr3:133973808 [GRCh38]
Chr3:133692652 [GRCh37]
Chr3:3q22.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3113
Count of miRNA genes:1097
Interacting mature miRNAs:1376
Transcripts:ENST00000310926, ENST00000462770, ENST00000464676, ENST00000477061, ENST00000478651, ENST00000478662, ENST00000481359, ENST00000493729
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-77366  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373133,651,588 - 133,651,688UniSTSGRCh37
Build 363135,134,278 - 135,134,378RGDNCBI36
Celera3132,077,443 - 132,077,543RGD
Cytogenetic Map3q21UniSTS
HuRef3131,029,718 - 131,029,818UniSTS
TNG Radiation Hybrid Map377469.0UniSTS
GeneMap99-GB4 RH Map3473.72UniSTS
Whitehead-RH Map3615.8UniSTS
NCBI RH Map31189.4UniSTS
SLC21A2_824  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373133,651,537 - 133,652,376UniSTSGRCh37
Build 363135,134,227 - 135,135,066RGDNCBI36
Celera3132,077,392 - 132,078,231RGD
HuRef3131,029,667 - 131,030,506UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2096 1600 1185 161 422 2743 1041 881 109 618 1230 161 1035 1664
Low 119 653 209 201 70 200 1181 959 1819 1 490 1 1 169 993
Below cutoff 679 26 26 672 26 129 125 843 4 129

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_031964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB201109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB201110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB201111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC080128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH006899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU783445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA592947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000310926   ⟹   ENSP00000311291
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,932,701 - 134,029,925 (-)Ensembl
RefSeq Acc Id: ENST00000462770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,942,312 - 134,029,925 (-)Ensembl
RefSeq Acc Id: ENST00000464676
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,950,952 - 134,029,925 (-)Ensembl
RefSeq Acc Id: ENST00000477061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,948,654 - 133,949,216 (-)Ensembl
RefSeq Acc Id: ENST00000478651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,955,343 - 134,029,925 (-)Ensembl
RefSeq Acc Id: ENST00000478662
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,979,547 - 134,052,184 (-)Ensembl
RefSeq Acc Id: ENST00000481359   ⟹   ENSP00000420028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,934,639 - 134,029,923 (-)Ensembl
RefSeq Acc Id: ENST00000493729   ⟹   ENSP00000418893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,934,611 - 134,029,914 (-)Ensembl
RefSeq Acc Id: NM_005630   ⟹   NP_005621
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383133,932,701 - 134,029,925 (-)NCBI
GRCh373133,651,540 - 133,748,920 (-)ENTREZGENE
Build 363135,134,230 - 135,231,418 (-)NCBI Archive
HuRef3131,029,670 - 131,126,922 (-)ENTREZGENE
CHM1_13133,615,353 - 133,712,732 (-)NCBI
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBI
Sequence:
RefSeq Acc Id: NP_005621   ⟸   NM_005630
- UniProtKB: Q86V98 (UniProtKB/Swiss-Prot),   Q8IUN2 (UniProtKB/Swiss-Prot),   Q92959 (UniProtKB/Swiss-Prot),   E7EU40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000418893   ⟸   ENST00000493729
RefSeq Acc Id: ENSP00000420028   ⟸   ENST00000481359
RefSeq Acc Id: ENSP00000311291   ⟸   ENST00000310926
Protein Domains
Kazal-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q92959-F1-model_v2 AlphaFold Q92959 1-643 view protein structure

Promoters
RGD ID:6865740
Promoter ID:EPDNEW_H6035
Type:initiation region
Name:SLCO2A1_1
Description:solute carrier organic anion transporter family member 2A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6036  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383134,029,925 - 134,029,985EPDNEW
RGD ID:6865742
Promoter ID:EPDNEW_H6036
Type:initiation region
Name:SLCO2A1_2
Description:solute carrier organic anion transporter family member 2A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6035  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383134,030,062 - 134,030,122EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:10955 AgrOrtholog
COSMIC SLCO2A1 COSMIC
Ensembl Genes ENSG00000174640 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000310926 ENTREZGENE
  ENST00000310926.11 UniProtKB/Swiss-Prot
  ENST00000481359.3 UniProtKB/TrEMBL
  ENST00000493729.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000174640 GTEx
HGNC ID HGNC:10955 ENTREZGENE
Human Proteome Map SLCO2A1 Human Proteome Map
InterPro Kazal_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_dom UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6578 UniProtKB/Swiss-Prot
NCBI Gene 6578 ENTREZGENE
OMIM 601460 OMIM
PANTHER PTHR11388 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 2A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Kazal_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA35840 PharmGKB
PROSITE KAZAL_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E7EU40 ENTREZGENE, UniProtKB/TrEMBL
  F8W9W8_HUMAN UniProtKB/TrEMBL
  Q86V98 ENTREZGENE
  Q8IUN2 ENTREZGENE
  Q92959 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q86V98 UniProtKB/Swiss-Prot
  Q8IUN2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 SLCO2A1  solute carrier organic anion transporter family member 2A1  MATR1  matrin F/G 1  Data merged from RGD:1350110 737654 PROVISIONAL
2015-11-24 SLCO2A1  solute carrier organic anion transporter family member 2A1  SLCO2A1  solute carrier organic anion transporter family, member 2A1  Symbol and/or name change 5135510 APPROVED