Camk2d (calcium/calmodulin-dependent protein kinase II delta) - Rat Genome Database

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Gene: Camk2d (calcium/calmodulin-dependent protein kinase II delta) Rattus norvegicus
Analyze
Symbol: Camk2d
Name: calcium/calmodulin-dependent protein kinase II delta
RGD ID: 2263
Description: Enables calcium/calmodulin-dependent protein kinase activity; nitric-oxide synthase binding activity; and transmembrane transporter binding activity. Involved in several processes, including intracellular monoatomic cation homeostasis; positive regulation of intracellular signal transduction; and regulation of calcium ion transmembrane transport. Located in nucleus and perinuclear region of cytoplasm. Part of protein-containing complex. Used to study epilepsy. Biomarker of myocardial infarction and renovascular hypertension. Orthologous to human CAMK2D (calcium/calmodulin dependent protein kinase II delta); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; type II interferon signaling pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH (-)-epigallocatechin 3-gallate; (R,R,R)-alpha-tocopherol; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ca++/calmodulin-dependent protein kinase 2 delta subunit; Ca++/calmodulin-dependent protein kinase II delta subunit; Ca++/calmodulin-dependent protein kinase II, delta subunit; calcium/calmodulin-dependent protein kinase (CaM kinase) II delta; calcium/calmodulin-dependent protein kinase II, delta; calcium/calmodulin-dependent protein kinase type II delta chain; calcium/calmodulin-dependent protein kinase type II subunit delta; caM kinase II subunit delta; caM-kinase II delta chain; caMK-II subunit delta; CAMK1; Camk2; Camki; MGC124639; RATCAMKI
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Is Marker For: QTLs:   Bp10   Bp158  
Candidate Gene For: Bp132 Eau5
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82217,698,324 - 217,961,898 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2217,698,551 - 217,960,276 (+)EnsemblGRCr8
mRatBN7.22215,023,785 - 215,287,351 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2222,688,368 - 222,950,090 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02220,588,293 - 220,850,022 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02215,442,493 - 215,704,214 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02230,900,907 - 231,132,207 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2230,901,126 - 231,132,039 (+)Ensemblrn6Rnor6.0
Rnor_5.02250,251,866 - 250,484,590 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42223,840,650 - 224,108,082 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2207,356,625 - 207,618,006 (+)NCBICelera
RGSC_v3.12223,827,329 - 224,097,854 (+)NCBI
Cytogenetic Map2q42NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(R,R,R)-alpha-tocopherol  (EXP)
(S)-amphetamine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dimethoxyphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aliskiren  (EXP)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
astemizole  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carvedilol  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clozapine  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP,ISO)
cyclosporin A  (ISO)
DDT  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
furfural  (ISO)
galaxolide  (EXP)
genistein  (EXP)
gentamycin  (EXP)
glyphosate  (ISO)
GSK-J4  (ISO)
haloperidol  (EXP)
harmine  (EXP)
indometacin  (ISO)
ionomycin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
KN-93  (EXP)
L-ascorbic acid  (EXP)
L-methionine  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP,ISO)
mercury dibromide  (ISO)
Mesaconitine  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel dichloride  (EXP)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
phenethyl caffeate  (EXP)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
pirarubicin  (ISO)
pirinixic acid  (EXP,ISO)
potassium chloride  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sarin  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
succimer  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
tributylstannane  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
uranium atom  (ISO)
valproic acid  (EXP)
valsartan  (EXP)
vinclozolin  (EXP)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion transport  (ISO)
cardiac muscle cell contraction  (IDA)
cardiac muscle contraction  (ISO)
cell growth involved in cardiac muscle cell development  (IMP)
endoplasmic reticulum calcium ion homeostasis  (IDA)
G1/S transition of mitotic cell cycle  (ISO)
intracellular potassium ion homeostasis  (IMP)
negative regulation of sodium ion transmembrane transport  (ISO)
peptidyl-serine phosphorylation  (ISO)
positive regulation of cardiac muscle cell apoptotic process  (IMP)
positive regulation of cardiac muscle hypertrophy  (ISO,ISS)
positive regulation of DNA biosynthetic process  (IMP)
positive regulation of ERK1 and ERK2 cascade  (IMP)
positive regulation of G2/M transition of mitotic cell cycle  (IMP)
positive regulation of Rac protein signal transduction  (IMP)
positive regulation of smooth muscle cell migration  (IMP)
positive regulation of vascular associated smooth muscle cell proliferation  (IMP)
protein autophosphorylation  (IDA,ISO)
protein phosphorylation  (ISO,ISS)
regulation of calcium ion transmembrane transport via high voltage-gated calcium channel  (IDA)
regulation of cardiac muscle cell action potential  (IDA)
regulation of cardiac muscle cell action potential involved in regulation of contraction  (IC)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (IC)
regulation of cell communication by electrical coupling  (IDA)
regulation of cell communication by electrical coupling involved in cardiac conduction  (IC)
regulation of cellular localization  (ISO,ISS)
regulation of membrane depolarization  (ISO)
regulation of neuronal synaptic plasticity  (IBA)
regulation of protein localization to plasma membrane  (IBA,IEA,IGI)
regulation of relaxation of cardiac muscle  (IDA,ISO)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IDA)
regulation of sodium ion transport  (ISO)
relaxation of cardiac muscle  (IDA)
response to hypoxia  (IMP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
seizures  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Ca2+/calmodulin-dependent protein kinase II (CaMKII) regulates cardiac sodium channel NaV1.5 gating by multiple phosphorylation sites. Ashpole NM, etal., J Biol Chem. 2012 Jun 8;287(24):19856-69. doi: 10.1074/jbc.M111.322537. Epub 2012 Apr 18.
2. Calcium/calmodulin-dependent protein kinase IIdelta 2 and gamma isoforms regulate potassium currents of rat brain capillary endothelial cells under hypoxic conditions. Balla Z, etal., J Biol Chem 2002 Jun 14;277(24):21306-14.
3. MicroRNA-145 suppresses ROS-induced Ca2+ overload of cardiomyocytes by targeting CaMKIIdelta. Cha MJ, etal., Biochem Biophys Res Commun. 2013 Jun 14;435(4):720-6. doi: 10.1016/j.bbrc.2013.05.050. Epub 2013 May 20.
4. Rad GTPase deficiency leads to cardiac hypertrophy. Chang L, etal., Circulation. 2007 Dec 18;116(25):2976-83. Epub 2007 Dec 3.
5. CaMKII regulation in information processing and storage. Coultrap SJ and Bayer KU, Trends Neurosci. 2012 Oct;35(10):607-18. doi: 10.1016/j.tins.2012.05.003. Epub 2012 Jun 19.
6. Protection of synapses against Alzheimer's-linked toxins: insulin signaling prevents the pathogenic binding of Abeta oligomers. De Felice FG, etal., Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1971-6. doi: 10.1073/pnas.0809158106. Epub 2009 Feb 2.
7. Mapping of a quantitative trait locus for blood pressure on rat chromosome 2. Deng AY, etal., J Clin Invest 1994 Jul;94(1):431-6
8. Mapping of rat chromosome 2 markers generated from chromosome-sorted DNA. Deng AY, etal., Mamm Genome 1997 Oct;8(10):731-5.
9. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10. MEF2 is regulated by CaMKIIdelta2 and a HDAC4-HDAC5 heterodimer in vascular smooth muscle cells. Ginnan R, etal., Biochem J. 2012 May 15;444(1):105-14. doi: 10.1042/BJ20120152.
11. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
12. Differential regulated interactions of calcium/calmodulin-dependent protein kinase II with isoforms of voltage-gated calcium channel beta subunits. Grueter CE, etal., Biochemistry. 2008 Feb 12;47(6):1760-7. Epub 2008 Jan 19.
13. Crucial role for Ca2(+)/calmodulin-dependent protein kinase-II in regulating diastolic stress of normal and failing hearts via titin phosphorylation. Hamdani N, etal., Circ Res. 2013 Feb 15;112(4):664-74. doi: 10.1161/CIRCRESAHA.111.300105. Epub 2013 Jan 2.
14. Involvement of the dual-specificity tyrosine phosphorylation-regulated kinase 1A-alternative splicing factor-calcium/calmodulin-dependent protein kinase IIdelta signaling pathway in myocardial infarction-induced heart failure of rats. He J, etal., J Card Fail. 2015 Sep;21(9):751-60. doi: 10.1016/j.cardfail.2015.05.015. Epub 2015 Jun 9.
15. Calcium/calmodulin-dependent protein kinase II-delta isoform regulation of vascular smooth muscle cell proliferation. House SJ, etal., Am J Physiol Cell Physiol. 2007 Jun;292(6):C2276-87. Epub 2007 Jan 31.
16. iNOS regulation by calcium/calmodulin-dependent protein kinase II in vascular smooth muscle. Jones RJ, etal., Am J Physiol Heart Circ Physiol. 2007 Jun;292(6):H2634-42. Epub 2007 Feb 9.
17. The deltaA isoform of calmodulin kinase II mediates pathological cardiac hypertrophy by interfering with the HDAC4-MEF2 signaling pathway. Li C, etal., Biochem Biophys Res Commun. 2011 May 27;409(1):125-30. Epub 2011 May 3.
18. Transgenic CaMKIIdeltaC overexpression uniquely alters cardiac myocyte Ca2+ handling: reduced SR Ca2+ load and activated SR Ca2+ release. Maier LS, etal., Circ Res. 2003 May 2;92(8):904-11. Epub 2003 Apr 3.
19. Novel and uncommon isoforms of the calcium sensing enzyme calcium/calmodulin dependent protein kinase II in heart tissue. Mayer P, etal., Basic Res Cardiol 1995 Sep-Oct;90(5):372-9.
20. CaM kinase II delta2-dependent regulation of vascular smooth muscle cell polarization and migration. Mercure MZ, etal., Am J Physiol Cell Physiol. 2008 Jun;294(6):C1465-75. Epub 2008 Apr 2.
21. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
22. The S18 ribosomal protein is a putative substrate for Ca2+/calmodulin-activated protein kinase II. Mishra-Gorur K, etal., J Biol Chem 2002 Sep 13;277(37):33537-40. Epub 2002 Jul 26.
23. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
24. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
25. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
26. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
27. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
28. Polymorphisms in CACNA1E and Camk2d are associated with seizure susceptibility of Sprague-Dawley rats. Rijkers K, etal., Epilepsy Res. 2010 Sep;91(1):28-34. Epub 2010 Jul 16.
29. New therapeutic targets in cardiology: arrhythmias and Ca2+/calmodulin-dependent kinase II (CaMKII). Rokita AG and Anderson ME, Circulation. 2012 Oct 23;126(17):2125-39. doi: 10.1161/CIRCULATIONAHA.112.124990.
30. Identification of novel isoforms of the delta subunit of Ca2+/calmodulin-dependent protein kinase II. Differential expression in rat brain and aorta. Schworer CM, etal., J Biol Chem 1993 Jul 5;268(19):14443-9.
31. Gene-based anchoring of the rat genetic linkage and cytogenetic maps: new regional localizations, orientation of the linkage groups, and insights into mammalian chromosome evolution. Szpirer C, etal., Mamm Genome 1998 Sep;9(9):721-34
32. Nuclear localization of the delta subunit of Ca2+/calmodulin-dependent protein kinase II in rat cerebellar granule cells. Takeuchi Y, etal., J Neurochem. 1999 Feb;72(2):815-25.
33. Tissue-specific expression of four types of rat calmodulin-dependent protein kinase II mRNAs. Tobimatsu T and Fujisawa H, J Biol Chem 1989 Oct 25;264(30):17907-12.
34. Dyrk1A-ASF-CaMKIIδ Signaling Is Involved in Valsartan Inhibition of Cardiac Hypertrophy in Renovascular Hypertensive Rats. Yao J, etal., Cardiology. 2016;133(3):198-204. doi: 10.1159/000441695. Epub 2015 Dec 1.
35. The deltaC isoform of CaMKII is activated in cardiac hypertrophy and induces dilated cardiomyopathy and heart failure. Zhang T, etal., Circ Res. 2003 May 2;92(8):912-9. Epub 2003 Apr 3.
Additional References at PubMed
PMID:8130281   PMID:8224201   PMID:10753652   PMID:11264466   PMID:12147342   PMID:12477932   PMID:12619878   PMID:12660151   PMID:14761894   PMID:15489334   PMID:15631885   PMID:15652482  
PMID:17179159   PMID:17234969   PMID:17873280   PMID:18096823   PMID:18721804   PMID:19422373   PMID:19602725   PMID:19883656   PMID:19910575   PMID:19946888   PMID:20124353   PMID:20442409  
PMID:20668654   PMID:20877009   PMID:21486818   PMID:21575598   PMID:21677263   PMID:21998325   PMID:22048920   PMID:22553113   PMID:22871113   PMID:23238742   PMID:23360843   PMID:23585120  
PMID:24003228   PMID:24106266   PMID:24347176   PMID:25416956   PMID:25539453   PMID:25820554   PMID:25931508   PMID:27199283   PMID:27940402   PMID:29476059   PMID:30462989   PMID:31051256  
PMID:31515488   PMID:31584202   PMID:32971072   PMID:33281190   PMID:34814703   PMID:35138512  


Genomics

Comparative Map Data
Camk2d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82217,698,324 - 217,961,898 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2217,698,551 - 217,960,276 (+)EnsemblGRCr8
mRatBN7.22215,023,785 - 215,287,351 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2222,688,368 - 222,950,090 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02220,588,293 - 220,850,022 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02215,442,493 - 215,704,214 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02230,900,907 - 231,132,207 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2230,901,126 - 231,132,039 (+)Ensemblrn6Rnor6.0
Rnor_5.02250,251,866 - 250,484,590 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42223,840,650 - 224,108,082 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2207,356,625 - 207,618,006 (+)NCBICelera
RGSC_v3.12223,827,329 - 224,097,854 (+)NCBI
Cytogenetic Map2q42NCBI
CAMK2D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384113,451,032 - 113,761,738 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4113,418,054 - 113,761,927 (-)Ensemblhg38GRCh38
GRCh374114,372,188 - 114,682,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364114,593,021 - 114,902,177 (-)NCBIBuild 36Build 36hg18NCBI36
Build 344114,731,176 - 115,040,332NCBI
Celera4111,663,868 - 111,974,821 (-)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4110,100,535 - 110,411,382 (-)NCBIHuRef
CHM1_14114,348,616 - 114,659,536 (-)NCBICHM1_1
T2T-CHM13v2.04116,759,793 - 117,070,469 (-)NCBIT2T-CHM13v2.0
Camk2d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393126,389,136 - 126,639,975 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3126,389,951 - 126,639,975 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383126,595,487 - 126,846,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3126,596,302 - 126,846,326 (+)Ensemblmm10GRCm38
MGSCv373126,299,891 - 126,547,972 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363126,588,995 - 126,837,076 (+)NCBIMGSCv36mm8
Celera3133,054,816 - 133,307,418 (+)NCBICelera
Cytogenetic Map3G1- G2NCBI
cM Map355.97NCBI
Camk2d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542825,583,501 - 25,881,787 (+)Ensembl
ChiLan1.0NW_00495542825,583,501 - 25,880,395 (+)NCBIChiLan1.0ChiLan1.0
CAMK2D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23111,546,549 - 111,866,052 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14111,837,995 - 112,151,992 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04105,957,773 - 106,271,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14116,520,393 - 116,836,244 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4116,523,850 - 116,835,387 (-)EnsemblpanPan2panpan1.1
CAMK2D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13233,223,093 - 33,525,783 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3233,224,716 - 33,525,371 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha328,506,405 - 8,809,096 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03233,451,334 - 33,753,342 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3233,451,343 - 33,754,194 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13233,428,910 - 33,730,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03233,198,098 - 33,499,625 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0326,362,791 - 6,664,281 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Camk2d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053017,383,235 - 7,682,967 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365634,227,986 - 4,526,118 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365634,226,412 - 4,526,139 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK2D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8108,915,572 - 109,222,905 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18108,916,019 - 109,221,317 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28116,954,755 - 117,261,929 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK2D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1761,240,584 - 61,552,562 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603740,007,639 - 40,323,758 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camk2d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1332,588,559 - 32,853,343 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Camk2d
2326 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2186
Count of miRNA genes:299
Interacting mature miRNAs:374
Transcripts:ENSRNOT00000015564, ENSRNOT00000016026, ENSRNOT00000065307, ENSRNOT00000068198
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2212145502231732847Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
1302789Stl26Serum triglyceride level QTL 263.10.0035blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)2206613059226891081Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2209350500221678003Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2192287802221089121Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2205135267225627153Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat

Markers in Region
D2Arb25   No map positions available.
D2Got152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,185,542 - 215,185,822 (+)MAPPERmRatBN7.2
Rnor_6.02231,015,777 - 231,016,056NCBIRnor6.0
Rnor_5.02250,365,368 - 250,365,647UniSTSRnor5.0
RGSC_v3.42224,007,948 - 224,008,228RGDRGSC3.4
RGSC_v3.42224,007,949 - 224,008,228UniSTSRGSC3.4
Celera2207,517,747 - 207,518,026UniSTS
RGSC_v3.12223,994,629 - 223,994,908RGD
RH 3.4 Map21546.5UniSTS
RH 3.4 Map21546.5RGD
RH 2.0 Map21136.0RGD
Cytogenetic Map2q42-q43UniSTS
D2Got155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,169,809 - 215,169,980 (+)MAPPERmRatBN7.2
Rnor_6.02231,091,285 - 231,091,453NCBIRnor6.0
Rnor_6.02231,000,016 - 231,000,184NCBIRnor6.0
Rnor_5.02250,441,045 - 250,441,213UniSTSRnor5.0
Rnor_5.02250,349,607 - 250,349,775UniSTSRnor5.0
RGSC_v3.42223,991,595 - 223,991,764RGDRGSC3.4
RGSC_v3.42223,991,596 - 223,991,764UniSTSRGSC3.4
Celera2207,502,015 - 207,502,184UniSTS
RGSC_v3.12223,978,276 - 223,978,444RGD
RH 3.4 Map21546.6UniSTS
RH 3.4 Map21546.6RGD
RH 2.0 Map21141.7RGD
Cytogenetic Map2q42-q43UniSTS
D2Got192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,185,563 - 215,185,814 (+)MAPPERmRatBN7.2
Rnor_6.02231,015,798 - 231,016,048NCBIRnor6.0
Rnor_5.02250,365,389 - 250,365,639UniSTSRnor5.0
RGSC_v3.42224,007,969 - 224,008,220RGDRGSC3.4
RGSC_v3.42224,007,970 - 224,008,220UniSTSRGSC3.4
Celera2207,517,768 - 207,518,018UniSTS
RGSC_v3.12223,994,649 - 223,994,900RGD
RH 2.0 Map21153.8RGD
Cytogenetic Map2q42-q43UniSTS
D2Mco44  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map21547.0UniSTS
RH 3.4 Map21547.0RGD
Cytogenetic Map2q42-q43UniSTS
D2Wox40  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q42-q43UniSTS
RH133136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,248,511 - 215,248,698 (+)MAPPERmRatBN7.2
Rnor_6.02231,085,029 - 231,085,215NCBIRnor6.0
Rnor_5.02250,434,789 - 250,434,975UniSTSRnor5.0
Celera2207,580,701 - 207,580,887UniSTS
RH 3.4 Map21539.3UniSTS
Cytogenetic Map2q42-q43UniSTS
RH134058  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02250,485,255 - 250,485,468NCBIRnor5.0
RGSC_v3.42224,110,253 - 224,110,465UniSTSRGSC3.4
Celera2207,620,177 - 207,620,389UniSTS
RH 3.4 Map21546.6UniSTS
Cytogenetic Map2q42-q43UniSTS
RH94737  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82217,961,599 - 217,961,766 (+)Marker Load Pipeline
mRatBN7.22215,287,052 - 215,287,219 (+)MAPPERmRatBN7.2
Rnor_6.02231,131,742 - 231,131,908NCBIRnor6.0
Rnor_5.02250,484,125 - 250,484,291UniSTSRnor5.0
RGSC_v3.42224,109,488 - 224,109,654UniSTSRGSC3.4
Celera2207,619,412 - 207,619,578UniSTS
Cytogenetic Map2q42-q43UniSTS
RH144538  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,283,280 - 215,283,498 (+)MAPPERmRatBN7.2
Rnor_6.02231,127,966 - 231,128,183NCBIRnor6.0
Rnor_5.02250,480,349 - 250,480,566UniSTSRnor5.0
RGSC_v3.42224,105,712 - 224,105,929UniSTSRGSC3.4
Celera2207,615,636 - 207,615,853UniSTS
RH 3.4 Map21546.6UniSTS
Cytogenetic Map2q42-q43UniSTS
RH138932  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,064,808 - 215,064,958 (+)MAPPERmRatBN7.2
Rnor_6.02230,849,019 - 230,849,168NCBIRnor6.0
Rnor_5.02250,199,978 - 250,200,127UniSTSRnor5.0
RGSC_v3.42223,883,645 - 223,883,794UniSTSRGSC3.4
Celera2207,397,248 - 207,397,397UniSTS
RH 3.4 Map21546.5UniSTS
Cytogenetic Map2q42-q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001437833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC107562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J05072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S81421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015564   ⟹   ENSRNOP00000015559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,551 - 217,957,330 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Rnor_6.0 Ensembl2230,901,264 - 231,132,039 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000016026   ⟹   ENSRNOP00000016026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,551 - 217,960,200 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,285,651 (+)Ensembl
Rnor_6.0 Ensembl2230,901,126 - 231,130,336 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000068198   ⟹   ENSRNOP00000062625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,551 - 217,960,200 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,285,651 (+)Ensembl
Rnor_6.0 Ensembl2230,901,348 - 231,128,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094868   ⟹   ENSRNOP00000076650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,743 - 217,959,771 (+)Ensembl
mRatBN7.2 Ensembl2215,024,127 - 215,283,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103949   ⟹   ENSRNOP00000095840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,551 - 217,960,276 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107724   ⟹   ENSRNOP00000097734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,743 - 217,959,773 (+)Ensembl
mRatBN7.2 Ensembl2215,024,127 - 215,283,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107819   ⟹   ENSRNOP00000085967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,551 - 217,957,330 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110364   ⟹   ENSRNOP00000084623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,689 - 217,960,227 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111056   ⟹   ENSRNOP00000082444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,551 - 217,960,200 (+)Ensembl
mRatBN7.2 Ensembl2215,024,127 - 215,283,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118198   ⟹   ENSRNOP00000094539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2217,698,742 - 217,959,771 (+)Ensembl
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
RefSeq Acc Id: NM_012519   ⟹   NP_036651
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,551 - 217,960,200 (+)NCBI
mRatBN7.22215,024,004 - 215,285,651 (+)NCBI
Rnor_6.02230,901,126 - 231,130,336 (+)NCBI
Rnor_5.02250,251,866 - 250,484,590 (+)NCBI
RGSC_v3.42223,840,650 - 224,108,082 (+)RGD
Celera2207,356,625 - 207,618,006 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233285   ⟹   XP_006233347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Rnor_5.02250,251,866 - 250,484,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761452   ⟹   XP_008759674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590604   ⟹   XP_017446093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590605   ⟹   XP_017446094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,958,875 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,129,404 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590607   ⟹   XP_017446096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590608   ⟹   XP_017446097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590610   ⟹   XP_017446099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590612   ⟹   XP_017446101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590613   ⟹   XP_017446102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590614   ⟹   XP_017446103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590616   ⟹   XP_017446105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590618   ⟹   XP_017446107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101686   ⟹   XP_038957614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101688   ⟹   XP_038957616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101689   ⟹   XP_038957617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101690   ⟹   XP_038957618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101693   ⟹   XP_038957621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,958,875 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101694   ⟹   XP_038957622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101696   ⟹   XP_038957624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101703   ⟹   XP_038957631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101704   ⟹   XP_038957632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_063281279   ⟹   XP_063137349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
RefSeq Acc Id: XM_063281281   ⟹   XP_063137351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
RefSeq Acc Id: XM_063281282   ⟹   XP_063137352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
RefSeq Acc Id: XM_063281283   ⟹   XP_063137353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
RefSeq Acc Id: XM_063281284   ⟹   XP_063137354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,961,898 (+)NCBI
RefSeq Acc Id: XM_063281285   ⟹   XP_063137355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82217,698,324 - 217,958,240 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001424762 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424763 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424764 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424765 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424766 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424767 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424768 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424769 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424770 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424771 (Get FASTA)   NCBI Sequence Viewer  
  NP_036651 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233347 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759674 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446093 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446094 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446096 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446097 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446099 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446101 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446102 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446103 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446105 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446107 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957617 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957631 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137349 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137351 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137352 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137353 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137354 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137355 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40866 (Get FASTA)   NCBI Sequence Viewer  
  AAA41479 (Get FASTA)   NCBI Sequence Viewer  
  AAA41480 (Get FASTA)   NCBI Sequence Viewer  
  AAA41481 (Get FASTA)   NCBI Sequence Viewer  
  AAB30235 (Get FASTA)   NCBI Sequence Viewer  
  AAB30236 (Get FASTA)   NCBI Sequence Viewer  
  AAB30237 (Get FASTA)   NCBI Sequence Viewer  
  AAB36089 (Get FASTA)   NCBI Sequence Viewer  
  AAI07563 (Get FASTA)   NCBI Sequence Viewer  
  CAA53395 (Get FASTA)   NCBI Sequence Viewer  
  CAA54412 (Get FASTA)   NCBI Sequence Viewer  
  CAA54413 (Get FASTA)   NCBI Sequence Viewer  
  CAA54414 (Get FASTA)   NCBI Sequence Viewer  
  CAA54415 (Get FASTA)   NCBI Sequence Viewer  
  EDL82144 (Get FASTA)   NCBI Sequence Viewer  
  EDL82145 (Get FASTA)   NCBI Sequence Viewer  
  EDL82146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015559.7
  ENSRNOP00000016026
  ENSRNOP00000016026.6
  ENSRNOP00000076650
  ENSRNOP00000082444
  ENSRNOP00000084623
  ENSRNOP00000085967
  ENSRNOP00000094539
  ENSRNOP00000095840.1
  ENSRNOP00000097734
GenBank Protein P15791 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036651   ⟸   NM_012519
- UniProtKB: Q63907 (UniProtKB/Swiss-Prot),   Q63906 (UniProtKB/Swiss-Prot),   Q63905 (UniProtKB/Swiss-Prot),   Q63904 (UniProtKB/Swiss-Prot),   Q3B7L0 (UniProtKB/Swiss-Prot),   P97916 (UniProtKB/Swiss-Prot),   P97915 (UniProtKB/Swiss-Prot),   Q63908 (UniProtKB/Swiss-Prot),   P15791 (UniProtKB/Swiss-Prot),   A6HVK9 (UniProtKB/TrEMBL),   A0A8L2QW89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233347   ⟸   XM_006233285
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759674   ⟸   XM_008761452
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017446093   ⟸   XM_017590604
- Peptide Label: isoform X2
- UniProtKB: Q63907 (UniProtKB/Swiss-Prot),   Q63906 (UniProtKB/Swiss-Prot),   Q63905 (UniProtKB/Swiss-Prot),   Q63904 (UniProtKB/Swiss-Prot),   Q3B7L0 (UniProtKB/Swiss-Prot),   P97916 (UniProtKB/Swiss-Prot),   P97915 (UniProtKB/Swiss-Prot),   Q63908 (UniProtKB/Swiss-Prot),   P15791 (UniProtKB/Swiss-Prot),   A6HVK9 (UniProtKB/TrEMBL),   A0A8L2QW89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446102   ⟸   XM_017590613
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017446099   ⟸   XM_017590610
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017446105   ⟸   XM_017590616
- Peptide Label: isoform X16
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446096   ⟸   XM_017590607
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017446107   ⟸   XM_017590618
- Peptide Label: isoform X20
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446101   ⟸   XM_017590612
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AL07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446103   ⟸   XM_017590614
- Peptide Label: isoform X15
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446097   ⟸   XM_017590608
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QW89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446094   ⟸   XM_017590605
- Peptide Label: isoform X2
- UniProtKB: Q63907 (UniProtKB/Swiss-Prot),   Q63906 (UniProtKB/Swiss-Prot),   Q63905 (UniProtKB/Swiss-Prot),   Q63904 (UniProtKB/Swiss-Prot),   Q3B7L0 (UniProtKB/Swiss-Prot),   P97916 (UniProtKB/Swiss-Prot),   P97915 (UniProtKB/Swiss-Prot),   Q63908 (UniProtKB/Swiss-Prot),   P15791 (UniProtKB/Swiss-Prot),   A6HVK9 (UniProtKB/TrEMBL),   A0A8L2QW89 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016026   ⟸   ENSRNOT00000016026
Ensembl Acc Id: ENSRNOP00000062625   ⟸   ENSRNOT00000068198
Ensembl Acc Id: ENSRNOP00000015559   ⟸   ENSRNOT00000015564
RefSeq Acc Id: XP_038957624   ⟸   XM_039101696
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038957621   ⟸   XM_039101693
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957631   ⟸   XM_039101703
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038957614   ⟸   XM_039101686
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AT87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957617   ⟸   XM_039101689
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AL07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957632   ⟸   XM_039101704
- Peptide Label: isoform X24
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957616   ⟸   XM_039101688
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AL07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957622   ⟸   XM_039101694
- Peptide Label: isoform X18
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957618   ⟸   XM_039101690
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AL07 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094539   ⟸   ENSRNOT00000118198
Ensembl Acc Id: ENSRNOP00000095840   ⟸   ENSRNOT00000103949
Ensembl Acc Id: ENSRNOP00000076650   ⟸   ENSRNOT00000094868
Ensembl Acc Id: ENSRNOP00000085967   ⟸   ENSRNOT00000107819
Ensembl Acc Id: ENSRNOP00000084623   ⟸   ENSRNOT00000110364
Ensembl Acc Id: ENSRNOP00000082444   ⟸   ENSRNOT00000111056
Ensembl Acc Id: ENSRNOP00000097734   ⟸   ENSRNOT00000107724
RefSeq Acc Id: XP_063137352   ⟸   XM_063281282
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063137351   ⟸   XM_063281281
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063137349   ⟸   XM_063281279
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063137353   ⟸   XM_063281283
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063137354   ⟸   XM_063281284
- Peptide Label: isoform X22
- UniProtKB: A0A8I6A1N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137355   ⟸   XM_063281285
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AT87 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P15791-F1-model_v2 AlphaFold P15791 1-533 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691739
Promoter ID:EPDNEW_R2264
Type:initiation region
Name:Camk2d_1
Description:calcium/calmodulin-dependent protein kinase II delta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02230,901,218 - 230,901,278EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2263 AgrOrtholog
BioCyc Gene G2FUF-51284 BioCyc
Ensembl Genes ENSRNOG00000011589 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015564.8 UniProtKB/Swiss-Prot
  ENSRNOT00000016026 ENTREZGENE
  ENSRNOT00000016026.9 UniProtKB/Swiss-Prot
  ENSRNOT00000094868 ENTREZGENE
  ENSRNOT00000103949.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107724 ENTREZGENE
  ENSRNOT00000107819 ENTREZGENE
  ENSRNOT00000110364 ENTREZGENE
  ENSRNOT00000111056 ENTREZGENE
  ENSRNOT00000118198 ENTREZGENE
Gene3D-CATH 3.10.450.50 UniProtKB/Swiss-Prot
  6.10.140.620 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7939424 IMAGE-MGC_LOAD
InterPro Ca/CaM-dep_prot_kinase-assoc UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  NTF2-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report rno:24246 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124639 IMAGE-MGC_LOAD
NCBI Gene 24246 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/Swiss-Prot
Pfam CaMKII_AD UniProtKB/Swiss-Prot
  Pkinase UniProtKB/Swiss-Prot
PhenoGen Camk2d PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011589 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54427 UniProtKB/Swiss-Prot
  SSF56112 UniProtKB/Swiss-Prot
UniProt A0A8I5YBF2_RAT UniProtKB/TrEMBL
  A0A8I5ZUY3_RAT UniProtKB/TrEMBL
  A0A8I6A1N4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A550 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AL07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AT87 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QW89 ENTREZGENE, UniProtKB/TrEMBL
  A6HVK8 ENTREZGENE, UniProtKB/TrEMBL
  A6HVK9 ENTREZGENE, UniProtKB/TrEMBL
  A6HVL0_RAT UniProtKB/TrEMBL
  KCC2D_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  P97915 ENTREZGENE
  P97916 ENTREZGENE
  Q3B7L0 ENTREZGENE
  Q63904 ENTREZGENE
  Q63905 ENTREZGENE
  Q63906 ENTREZGENE
  Q63907 ENTREZGENE
  Q63908 ENTREZGENE
UniProt Secondary P97915 UniProtKB/Swiss-Prot
  P97916 UniProtKB/Swiss-Prot
  Q3B7L0 UniProtKB/Swiss-Prot
  Q63904 UniProtKB/Swiss-Prot
  Q63905 UniProtKB/Swiss-Prot
  Q63906 UniProtKB/Swiss-Prot
  Q63907 UniProtKB/Swiss-Prot
  Q63908 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-11 Camk2d  calcium/calmodulin-dependent protein kinase II delta  Camk2d  calcium/calmodulin-dependent protein kinase (CaM kinase) II delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Camk2d  calcium/calmodulin-dependent protein kinase (CaM kinase) II delta  Camk2d  calcium/calmodulin-dependent protein kinase II, delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Camk2d  calcium/calmodulin-dependent protein kinase II, delta    Ca++/calmodulin-dependent protein kinase 2 delta subunit  Name updated 629478 APPROVED
2002-06-10 Camk2d  Ca++/calmodulin-dependent protein kinase 2 delta subunit      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed most abundantly in nervous tissue 61038
gene_expression expressed most abundantly in nervous tissue 68909
gene_expression delta 1 isoform expressed in brain; delta 2 and delta 3 isoforms expressed in aorta; delta 4 isoform expressed in skeletal muscle 1298725
gene_process may play a role in neurotransmission or synaptic plasticity  
gene_process regulates potassium currents in brain capillary endothelial cells under hypoxic conditions 724615
gene_protein autophosphorylated upon exposure to hypoxic conditions 724615
gene_transcript alternatively spliced isoforms expressed in different tissues 1298725