Tomm5 (translocase of outer mitochondrial membrane 5) - Rat Genome Database

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Gene: Tomm5 (translocase of outer mitochondrial membrane 5) Rattus norvegicus
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Symbol: Tomm5
Name: translocase of outer mitochondrial membrane 5
RGD ID: 1596808
Description: Predicted to be involved in protein targeting to mitochondrion and protein transport. Predicted to be located in mitochondrial outer membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Orthologous to human TOMM5 (translocase of outer mitochondrial membrane 5); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC680080; LOC680080; mitochondrial import receptor subunit TOM5 homolog; translocase of outer mitochondrial membrane 5 homolog; translocase of outer mitochondrial membrane 5 homolog (yeast); translocase of outer mitochondrial membrane 5 homolog-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Tomm5-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,158,026 - 64,160,857 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2559,362,360 - 59,365,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,362,240 - 59,365,269 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx561,336,384 - 61,339,218 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,155,903 - 63,158,737 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,125,139 - 63,127,973 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,655,708 - 60,658,568 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,655,379 - 60,658,535 (-)Ensemblrn6Rnor6.0
Rnor_5.0565,164,579 - 65,167,436 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4561,665,299 - 61,668,124 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera557,930,892 - 57,933,752 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Biogenesis of mitochondrial outer membrane proteins, problems and diseases. Ellenrieder L, etal., Biol Chem. 2015 Oct 1;396(11):1199-213. doi: 10.1515/hsz-2015-0170.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Assembly of beta-barrel proteins in the mitochondrial outer membrane. Hohr AI, etal., Biochim Biophys Acta. 2015 Jan;1853(1):74-88. doi: 10.1016/j.bbamcr.2014.10.006. Epub 2014 Oct 8.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Unlocking the presequence import pathway. Schulz C, etal., Trends Cell Biol. 2015 May;25(5):265-75. doi: 10.1016/j.tcb.2014.12.001. Epub 2014 Dec 23.
7. Cooperation of protein machineries in mitochondrial protein sorting. Wenz LS, etal., Biochim Biophys Acta. 2015 May;1853(5):1119-29. doi: 10.1016/j.bbamcr.2015.01.012. Epub 2015 Jan 26.
Additional References at PubMed
PMID:18331822   PMID:18614015  


Genomics

Comparative Map Data
Tomm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,158,026 - 64,160,857 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2559,362,360 - 59,365,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,362,240 - 59,365,269 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx561,336,384 - 61,339,218 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,155,903 - 63,158,737 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,125,139 - 63,127,973 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,655,708 - 60,658,568 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,655,379 - 60,658,535 (-)Ensemblrn6Rnor6.0
Rnor_5.0565,164,579 - 65,167,436 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4561,665,299 - 61,668,124 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera557,930,892 - 57,933,752 (-)NCBICelera
Cytogenetic Map5q22NCBI
TOMM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,588,413 - 37,592,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,582,646 - 37,592,609 (-)Ensemblhg38GRCh38
GRCh37937,588,410 - 37,592,594 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,578,410 - 37,582,636 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34937,578,416 - 37,582,568NCBI
Celera937,521,641 - 37,525,867 (-)NCBICelera
Cytogenetic Map9p13.2NCBI
HuRef937,540,458 - 37,544,667 (-)NCBIHuRef
CHM1_1937,590,106 - 37,594,332 (-)NCBICHM1_1
T2T-CHM13v2.0937,612,120 - 37,616,304 (-)NCBIT2T-CHM13v2.0
Tomm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,105,209 - 45,108,113 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,105,208 - 45,108,114 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38445,105,209 - 45,108,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,105,208 - 45,108,114 (-)Ensemblmm10GRCm38
MGSCv37445,118,081 - 45,120,985 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36445,126,307 - 45,129,208 (-)NCBIMGSCv36mm8
Celera445,125,618 - 45,128,522 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.72NCBI
Tomm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541928,897,328 - 28,900,289 (+)NCBIChiLan1.0ChiLan1.0
TOMM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,000,152 - 87,004,378 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1987,006,090 - 87,010,320 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0937,433,186 - 37,437,397 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1938,357,157 - 38,361,377 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl938,357,617 - 38,361,267 (-)EnsemblpanPan2panpan1.1
TOMM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11153,896,300 - 53,901,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1153,896,305 - 53,901,489 (-)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.01155,005,651 - 55,010,874 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11153,503,839 - 53,509,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,533,481 - 53,538,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,229,520 - 54,234,716 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tomm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947168,824,188 - 168,827,861 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365245,371,775 - 5,375,443 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365245,371,768 - 5,375,443 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOMM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11238,328,894 - 238,333,066 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21266,262,227 - 266,266,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TOMM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,992,137 - 42,992,670 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603840,059,979 - 40,064,455 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tomm5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249301,185,780 - 1,189,179 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249301,185,424 - 1,188,592 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tomm5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v111,400,463 - 1,403,292 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tomm5
12 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:174
Interacting mature miRNAs:195
Transcripts:ENSRNOT00000063953, ENSRNOT00000067522
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 1 56 146 64 60 48 73 48 6 282 151 11 133 70 81 12 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000092866   ⟹   ENSRNOP00000076033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl560,655,379 - 60,658,521 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093024   ⟹   ENSRNOP00000076066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,362,240 - 59,365,269 (-)Ensembl
Rnor_6.0 Ensembl560,655,709 - 60,658,535 (-)Ensembl
RefSeq Acc Id: NM_001398960   ⟹   NP_001385889
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,158,026 - 64,160,857 (-)NCBI
mRatBN7.2559,362,360 - 59,365,191 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385889 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98808 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000076033   ⟸   ENSRNOT00000092866
Ensembl Acc Id: ENSRNOP00000076066   ⟸   ENSRNOT00000093024
RefSeq Acc Id: NP_001385889   ⟸   NM_001398960
- UniProtKB: A6IJ86 (UniProtKB/TrEMBL),   A6IJ88 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GWY3-F1-model_v2 AlphaFold A0A1B0GWY3 1-51 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693699
Promoter ID:EPDNEW_R4222
Type:initiation region
Name:Tomm5_1
Description:translocase of outer mitochondrial membrane 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4224  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0560,658,517 - 60,658,577EPDNEW
RGD ID:13693707
Promoter ID:EPDNEW_R4224
Type:initiation region
Name:Tomm5_2
Description:translocase of outer mitochondrial membrane 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4222  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0560,658,547 - 60,658,607EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596808 AgrOrtholog
BioCyc Gene G2FUF-41457 BioCyc
Ensembl Genes ENSRNOG00000062108 Ensembl
InterPro Tom5 UniProtKB/TrEMBL
  TOMM5 UniProtKB/TrEMBL
NCBI Gene 680080 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG UniProtKB/TrEMBL
  PTHR28436 UniProtKB/TrEMBL
Pfam Tom5 UniProtKB/TrEMBL
PhenoGen Tomm5 PhenoGen
RatGTEx ENSRNOG00000062108 RatGTEx
UniProt A6IJ86 ENTREZGENE, UniProtKB/TrEMBL
  A6IJ88 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Tomm5  translocase of outer mitochondrial membrane 5  Tomm5  translocase of outer mitochondrial membrane 5 homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Tomm5  translocase of outer mitochondrial membrane 5 homolog (yeast)  LOC100365201  translocase of outer mitochondrial membrane 5 homolog-like  Data merged from RGD:2319473 1643240 APPROVED
2010-05-05 LOC100365201  translocase of outer mitochondrial membrane 5 homolog-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-04 Tomm5  translocase of outer mitochondrial membrane 5 homolog (yeast)  LOC680080  hypothetical protein LOC680080  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680080  hypothetical protein LOC680080  LOC684601  hypothetical protein LOC684601  Data merged from RGD:1587971 1643240 APPROVED
2006-11-20 LOC680080  hypothetical protein LOC680080      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684601  hypothetical protein LOC684601      Symbol and Name status set to provisional 70820 PROVISIONAL