TOMM5 (translocase of outer mitochondrial membrane 5) - Rat Genome Database

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Gene: TOMM5 (translocase of outer mitochondrial membrane 5) Canis lupus familiaris
Analyze
Symbol: TOMM5
Name: translocase of outer mitochondrial membrane 5
RGD ID: 12156122
Description: INVOLVED IN protein targeting to mitochondrion (inferred); protein transport (inferred); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN membrane (inferred); mitochondrial outer membrane (inferred); mitochondrial outer membrane translocase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial import receptor subunit TOM5 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11153,896,300 - 53,901,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1153,896,305 - 53,901,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01155,005,651 - 55,010,874 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11153,503,839 - 53,509,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,533,481 - 53,538,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,229,520 - 54,234,716 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TOMM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11153,896,300 - 53,901,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1153,896,305 - 53,901,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01155,005,651 - 55,010,874 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11153,503,839 - 53,509,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,533,481 - 53,538,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,229,520 - 54,234,716 (-)NCBIUU_Cfam_GSD_1.0
TOMM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,588,413 - 37,592,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,582,646 - 37,592,604 (-)EnsemblGRCh38hg38GRCh38
GRCh37937,588,410 - 37,592,594 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,578,410 - 37,582,636 (-)NCBINCBI36Build 36hg18NCBI36
Build 34937,578,416 - 37,582,568NCBI
Celera937,521,641 - 37,525,867 (-)NCBICelera
Cytogenetic Map9p13.2NCBI
HuRef937,540,458 - 37,544,667 (-)NCBIHuRef
CHM1_1937,590,106 - 37,594,332 (-)NCBICHM1_1
T2T-CHM13v2.0937,612,120 - 37,616,304 (-)NCBIT2T-CHM13v2.0
Tomm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,105,209 - 45,108,113 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,105,208 - 45,108,114 (-)EnsemblGRCm39 Ensembl
GRCm38445,105,209 - 45,108,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,105,208 - 45,108,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv37445,118,081 - 45,120,985 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36445,126,307 - 45,129,208 (-)NCBIMGSCv36mm8
Celera445,125,618 - 45,128,522 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.72NCBI
Tomm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,158,026 - 64,160,857 (-)NCBIGRCr8
mRatBN7.2559,362,360 - 59,365,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,362,240 - 59,365,269 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx561,336,384 - 61,339,218 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,155,903 - 63,158,737 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,125,139 - 63,127,973 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,655,708 - 60,658,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,655,379 - 60,658,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,164,579 - 65,167,436 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,665,299 - 61,668,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera557,930,892 - 57,933,752 (-)NCBICelera
Cytogenetic Map5q22NCBI
Tomm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541928,897,328 - 28,900,289 (+)NCBIChiLan1.0ChiLan1.0
TOMM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,000,152 - 87,004,378 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1987,006,090 - 87,010,320 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0937,433,186 - 37,437,397 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1938,357,157 - 38,361,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl938,357,617 - 38,361,267 (-)Ensemblpanpan1.1panPan2
Tomm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947168,824,188 - 168,827,861 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365245,371,775 - 5,375,443 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365245,371,768 - 5,375,443 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOMM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11238,328,894 - 238,333,066 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21266,262,227 - 266,266,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TOMM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,992,137 - 42,992,670 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603840,059,979 - 40,064,455 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tomm5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249301,185,780 - 1,189,179 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249301,185,424 - 1,188,592 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TOMM5
42 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 7 10 6
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000043992   ⟹   ENSCAFP00000037744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1153,896,305 - 53,901,489 (-)Ensembl
RefSeq Acc Id: XM_038490744   ⟹   XP_038346672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11153,503,839 - 53,509,058 (-)NCBI
RefSeq Acc Id: XM_038552875   ⟹   XP_038408803
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01154,229,520 - 54,234,716 (-)NCBI
RefSeq Acc Id: XM_038616737   ⟹   XP_038472665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01153,533,481 - 53,538,694 (-)NCBI
RefSeq Acc Id: XM_038682205   ⟹   XP_038538133
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01155,005,651 - 55,010,874 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038346672 (Get FASTA)   NCBI Sequence Viewer  
  XP_038408803 (Get FASTA)   NCBI Sequence Viewer  
  XP_038472665 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538133 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030008748.1
  ENSCAFP00040026487.1
Reference Protein Sequences
RefSeq Acc Id: XP_038346672   ⟸   XM_038490744
RefSeq Acc Id: XP_038472665   ⟸   XM_038616737
RefSeq Acc Id: XP_038538133   ⟸   XM_038682205
- UniProtKB: A0A8C0MGE5 (UniProtKB/TrEMBL),   A0A8C0KVB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408803   ⟸   XM_038552875
- UniProtKB: A0A8C0KVB3 (UniProtKB/TrEMBL),   A0A8C0MGE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00000037744   ⟸   ENSCAFT00000043992


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031129 Ensembl
  ENSCAFG00030005465 UniProtKB/TrEMBL
  ENSCAFG00040016504 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030009996.1 UniProtKB/TrEMBL
  ENSCAFT00040030477.1 UniProtKB/TrEMBL
InterPro Tom5 UniProtKB/TrEMBL
  TOMM5_metazoa UniProtKB/TrEMBL
NCBI Gene TOMM5 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG UniProtKB/TrEMBL
  PTHR28436 UniProtKB/TrEMBL
Pfam Tom5 UniProtKB/TrEMBL
UniProt A0A8C0KVB3 ENTREZGENE
  A0A8C0MGE5 ENTREZGENE, UniProtKB/TrEMBL