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Gene: Cenpn (centromere protein N) Rattus norvegicus

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Symbol:

Cenpn

Name:

centromere protein N

RGD ID:

1310953

Description:

Predicted to be involved in CENP-A containing chromatin assembly and chromosome segregation. Predicted to be located in kinetochore and nucleus. Predicted to be part of inner kinetochore. Predicted to be active in nucleoplasm. Orthologous to human CENPN (centromere protein N); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CENP-N; Da2-27; Da2-4; LOC361416; MGC94524; RGD1310953; similar to RIKEN cDNA 2610510J17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CENPN (centromere protein N)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cenpn (centromere protein N)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CENPN (centromere protein N)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cenpn (centromere protein N)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cenpn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,880,101 - 61,902,850 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	61,877,148 - 61,902,918 (+)	Ensembl				GRCr8
mRatBN7.2	19	44,971,265 - 44,994,019 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,968,308 - 44,994,012 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	51,781,277 - 51,803,785 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,434,293 - 52,456,801 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,678,533 - 54,701,041 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	55,677,821 - 55,700,258 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	53,801,369 - 53,823,809 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	55,676,079 - 55,698,516 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	53,395,116 - 53,417,611 (+)	NCBI		F344_StmMcwi
Rnor_6.0	19	49,457,461 - 49,479,989 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,340,184 - 49,479,996 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	47,029,240 - 47,051,557 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	44,244,906 - 44,267,223 (+)	NCBI		Celera
RGSC_v3.1	19	47,034,120 - 47,056,438 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

endosulfan (EXP)

Enterolactone (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

gentamycin (EXP)

hydralazine (ISO)

L-methionine (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monoethyl phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

progesterone (ISO)

propanal (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CENP-A containing chromatin assembly (IEA)

chromosome segregation (IEA)

Cellular Component

chromosome, centromeric region (IEA)

kinetochore (IEA)

nucleoplasm (IBA,ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Cenpn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,880,101 - 61,902,850 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	61,877,148 - 61,902,918 (+)	Ensembl				GRCr8
mRatBN7.2	19	44,971,265 - 44,994,019 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,968,308 - 44,994,012 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	51,781,277 - 51,803,785 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,434,293 - 52,456,801 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,678,533 - 54,701,041 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	55,677,821 - 55,700,258 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	53,801,369 - 53,823,809 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	55,676,079 - 55,698,516 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	53,395,116 - 53,417,611 (+)	NCBI		F344_StmMcwi
Rnor_6.0	19	49,457,461 - 49,479,989 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,340,184 - 49,479,996 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	47,029,240 - 47,051,557 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	44,244,906 - 44,267,223 (+)	NCBI		Celera
RGSC_v3.1	19	47,034,120 - 47,056,438 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

CENPN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	81,007,214 - 81,033,107 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	81,006,506 - 81,033,114 (+)	Ensembl			hg38	GRCh38
GRCh37	16	81,040,819 - 81,066,712 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,597,604 - 79,624,213 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	65,338,504 - 65,365,102 (+)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,796,979 - 66,823,593 (+)	NCBI		HuRef
CHM1_1	16	82,451,471 - 82,478,069 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	87,068,448 - 87,094,631 (+)	NCBI		T2T-CHM13v2.0

Cenpn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,648,448 - 117,668,243 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,648,469 - 117,668,246 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	116,921,716 - 116,941,504 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,921,730 - 116,941,507 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	119,445,640 - 119,465,403 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,807,717 - 119,827,480 (+)	NCBI		MGSCv36	mm8
Celera	8	121,141,125 - 121,160,889 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	63.34	NCBI

Cenpn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,804,578 - 3,818,885 (+)	Ensembl
ChiLan1.0	NW_004955522	3,801,856 - 3,818,675 (+)	NCBI	ChiLan1.0	ChiLan1.0

CENPN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	90,757,576 - 90,783,779 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	96,677,054 - 96,703,229 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	61,611,724 - 61,639,253 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	81,039,744 - 81,067,931 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,039,744 - 81,067,919 (+)	Ensembl			panPan2	panpan1.1

CENPN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	70,798,322 - 70,820,927 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	70,798,886 - 70,820,960 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,747,277 - 70,769,889 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	71,103,374 - 71,125,973 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	71,103,360 - 71,125,991 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	71,045,807 - 71,068,461 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	70,881,061 - 70,903,672 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,358,593 - 71,381,205 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cenpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	30,886,647 - 30,905,934 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	28,692,905 - 28,701,809 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	28,683,233 - 28,702,466 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CENPN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,227,990 - 7,254,891 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	7,227,981 - 7,254,927 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CENPN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,459,008 - 66,483,945 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,464,569 - 66,483,932 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	9,351,423 - 9,376,341 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cenpn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,306,521 - 6,330,898 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	6,309,194 - 6,331,152 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cenpn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	36,554,115 - 36,576,191 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	324
Count of miRNA genes:	133
Interacting mature miRNAs:	139
Transcripts:	ENSRNOT00000015158, ENSRNOT00000042458
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

AI136171

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	44,993,434 - 44,993,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	49,479,412 - 49,479,547	NCBI	Rnor6.0
Rnor_5.0	19	60,270,717 - 60,270,852	UniSTS	Rnor5.0
RGSC_v3.4	19	47,050,980 - 47,051,115	UniSTS	RGSC3.4
Celera	19	44,266,646 - 44,266,781	UniSTS
RH 3.4 Map	19	596.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH137130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	44,993,815 - 44,993,995 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	49,479,793 - 49,479,972	NCBI	Rnor6.0
Rnor_5.0	19	60,271,098 - 60,271,277	UniSTS	Rnor5.0
RGSC_v3.4	19	47,051,361 - 47,051,540	UniSTS	RGSC3.4
Celera	19	44,267,027 - 44,267,206	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	16	12	150	248	91	90	65	139	59	22	485	331	11	227	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY325257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY325261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015158 ⟹ ENSRNOP00000015158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	61,879,939 - 61,902,918 (+)	Ensembl
mRatBN7.2 Ensembl	19	44,971,709 - 44,993,938 (+)	Ensembl
Rnor_6.0 Ensembl	19	49,462,129 - 49,479,996 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000042458 ⟹ ENSRNOP00000050945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	61,877,148 - 61,902,253 (+)	Ensembl
mRatBN7.2 Ensembl	19	44,968,308 - 44,993,415 (+)	Ensembl
Rnor_6.0 Ensembl	19	49,340,184 - 49,479,392 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084445 ⟹ ENSRNOP00000071328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	61,879,939 - 61,902,855 (+)	Ensembl
mRatBN7.2 Ensembl	19	44,971,712 - 44,994,012 (+)	Ensembl
Rnor_6.0 Ensembl	19	49,457,677 - 49,479,983 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110763 ⟹ ENSRNOP00000094353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	44,971,053 - 44,993,415 (+)	Ensembl

RefSeq Acc Id:

NM_001008366 ⟹ NP_001008367

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,533 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,695 - 44,994,012 (+)	NCBI
Dahl_SR_JrHsd	19	55,677,821 - 55,700,258 (+)	NCBI
Lyon_Normotensive	19	53,801,369 - 53,823,809 (+)	NCBI
Lyon_Hypertensive	19	55,676,079 - 55,698,516 (+)	NCBI
F344_StmMcwi	19	53,395,116 - 53,417,611 (+)	NCBI
Rnor_6.0	19	49,457,677 - 49,479,989 (+)	NCBI
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI
RGSC_v3.4	19	47,029,240 - 47,051,557 (+)	RGD
Celera	19	44,244,906 - 44,267,223 (+)	RGD

Sequence:

show sequence

CCCGAGCGGCCATTGGCGGCTTCGAAAGCGCCTCGGCGGGAAGTGCTGCCGGCGCGGTGGGCGA
TGCGGACTGGTTAGTTCTTTTAGGAATGCCATGCTCCATATCACTCAGGATTAAGAATCTTCGG
GAGTGCTAAGGAATGTTACATCTTGCCTTTGGGCACCCCATCCCGAATGTCCTGATCCCCGAAG
CTCATAGCCGCATCTAGCCTGAGATGGATGAGAATGTTGCCGAGTTTCTCCGGAGGATCATCCT
GAAAATCCCTCTGTGTGAGATGAAGACCATCCTAGAAGCCTGGGACTTTTTGTCTGAAGACCAA
CTGCAGAGCATAAACTTGAAGCAGAGAAAGGAATTTCTGGCCCAGGAAGTGATTCTGCTATGTG
AGGACAAGTGTGCAAGTCTTGATGACATGGCCCTTTTAGACCTCATGTATACTCAATTTCATCG
GCACCAGAAGCTTTGGAATGTCTTTCAGATGAGTAAAGAACCAGGTGGAAATGATGTGGACCTT
TTTGATATGGAACAGTTCCAAAGTTCATTTAAGAGAATTCTTCAGAGAGCATTAAAAAATGTTA
CGGTCAGCTTCAGAGTCTACGAGAAGAATTCGGTGTGGATTCGGGTTGCCTGGGGAACACAGTA
TTCACAGCCAAACCAGTACAAGCCCACGTTTGTTGTGTATTATCCCCAGACCCCATACGTCTTC
ATTTCCTCCTGCTATCTGAAGAGCACTGTGCCCCTTCTCCATCAGGCGCTGAAAGTCGCTAGCA
AACACCATCAGATGGCGCAGCTGGACCTGAGAAGCAGGCACCTGGACTCACTCACGGCTATTGT
GTTTAACGAGTATGACCAGACCTTTGAAAATTACAACTCCACAGCGTCTTGGCGTGAAGGAAGC
CTTGGACTGAAGACAGATTTGGATTCAAAGATCATTCATGAAAACACAGAGGAAAAAGTGAGAA
TCCACAGAGCCACGCAAGAGGCCTTTGGAGCCTATCCTCAGCCACAGCTAGAGTTCGCACAGTA
TAAGCTGGAAACCAAGTTCAAGAGTGACGTAGGTGGGGGCATCTTGGCTGACAGGAAAGAGCCC
CTCCGGTGCCTCGTCAAGTTCTCCAGCCCACATCTTTTGGAAGCATTGAAATCCTTAGCACCAG
CGGGTATAGCAGATACACCACTTTCTCCACTGCTCACCTGCATACCAAGCAAGAAAATGAATTA
TTTTAAAATTAGAGATAAATGAAATGCATTTGTCTCAGCTTTTATTGCACATGCGATTCCAGTT
ATAGCCGGCTAGCTCCTGCGTATAGCCTTGTGTTTTAGGAACCAATCCTTGGCATGGGAAATTA
GTGTTTCTAATGTAACTGTTAGGACTGAATCTGTCCTCCATATGTGTGTGCACTCTCTCTTCTG
AGTACAGCAGCTGTGGGCATTTGACAAGTGATAAATGTGTGTGTGCACACACATGCACGATCAG
ATCACACACACACTCGAGGCTGCAGTGATCTCAACCCTAGGACACACAGAAGTCAAGCATAGGC
ACAGTGGTGAATCTGCTGTCCTTTCTCCCACTGCTGCTGCTTATCCTCAGAAGTCTGGTTTCTG
TGGAATCTGTTACACCCTCGTTCACAGATAGAAGAACCAAGAAACTACCCAACCCAAACCCCAA
ACTAGGAGAATCAATGGGGAGAGCTGGGGCTACTACCCAAGGCTGCATATCGAATGGCTTCTTT
GTGTAAATAACTTTTCTGTTGTACGTATTCTTGTCACGATCTCTGATCCATGGAACACTGCAAC
TGAGTGCCACTGTTACACTGATTTGTGAATAAAGATACTGACAAACAAAAAAAAAAAAAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255686 ⟹ XP_006255748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,612 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,772 - 44,994,019 (+)	NCBI
Rnor_6.0	19	49,457,804 - 49,479,989 (+)	NCBI
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI

Sequence:

show sequence

CGGGAGCCAGGCCTCAGATCTCTACGGGGGCCTTGCCACAGCGCAGTCCCGCCACGCGATCTCG
GCCTAGGAGTGACACTAGTAGAGCCCAGTTCTTTTAGGAATGCCATGCTCCATATCACTCAGGA
TTAAGAATCTTCGGGAGTGCTAAGGAATGTTACATCTTGCCTTTGGGCACCCCATCCCGAATGT
CCTGATCCCCGAAGCTCATAGCCGCATCTAGCCTGAGATGGATGAGAATGTTGCCGAGTTTCTC
CGGAGGATCATCCTGAAAATCCCTCTGTGTGAGATGAAGACCATCCTAGAAGCCTGGGACTTTT
TGTCTGAAGACCAACTGCAGAGCATAAACTTGAAGCAGAGAAAGGAATTTCTGGCCCAGGAAGT
GATTCTGCTATGTGAGGACAAGTGTGCAAGTCTTGATGACATGGCCCTTTTAGACCTCATGTAT
ACTCAATTTCATCGGCACCAGAAGCTTTGGAATGTCTTTCAGATGAGTAAAGAACCAGGTGGAA
ATGATGTGGACCTTTTTGATATGGAACAGTTCCAAAGTTCATTTAAGAGAATTCTTCAGAGAGC
ATTAAAAAATGTTACGGTCAGCTTCAGAGTCTACGAGAAGAATTCGGTGTGGATTCGGGTTGCC
TGGGGAACACAGTATTCACAGCCAAACCAGTACAAGCCCACGTTTGTTGTGTATTATCCCCAGA
CCCCATACGTCTTCATTTCCTCCTGCTATCTGAAGAGCACTGTGCCCCTTCTCCATCAGGCGCT
GAAAGTCGCTAGCAAACACCATCAGATGGCGCAGCTGGACCTGAGAAGCAGGCACCTGGACTCA
CTCACGGCTATTGTGTTTAACGAGTATGACCAGACCTTTGAAAATTACAACTCCACAGCGTCTT
GGCGTGAAGGAAGCCTTGGACTGAAGACAGATTTGGATTCAAAGATCATTCATGAAAACACAGA
GGAAAAAGTGAGAATCCACAGAGCCACGCAAGAGGCCTTTGGAGCCTATCCTCAGCCACAGCTA
GAGTTCGCACAGTATAAGCTGGAAACCAAGTTCAAGAGTGACGTAGGTGGGGGCATCTTGGCTG
ACAGGAAAGAGCCCCTCCGGTGCCTCGTCAAGTTCTCCAGCCCACATCTTTTGGAAGCATTGAA
ATCCTTAGCACCAGCGGGTATAGCAGATACACCACTTTCTCCACTGCTCACCTGCATACCAAGC
AAGAAAATGAATTATTTTAAAATTAGAGATAAATGAAATGCATTTGTCTCAGCTTTTATTGCAC
ATGCGATTCCAGTTATAGCCGGCTAGCTCCTGCGTATAGCCTTGTGTTTTAGGAACCAATCCTT
GGCATGGGAAATTAGTGTTTCTAATGTAACTGTTAGGACTGAATCTGTCCTCCATATGTGTGTG
CACTCTCTCTTCTGAGTACAGCAGCTGTGGGCATTTGACAAGTGATAAATGTGTGTGTGCACAC
ACATGCACGATCAGATCACACACACACTCGAGGCTGCAGTGATCTCAACCCTAGGACACACAGA
AGTCAAGCATAGGCACAGTGGTGAATCTGCTGTCCTTTCTCCCACTGCTGCTGCTTATCCTCAG
AAGTCTGGTTTCTGTGGAATCTGTTACACCCTCGTTCACAGATAGAAGAACCAAGAAACTACCC
AACCCAAACCCCAAACTAGGAGAATCAATGGGGAGAGCTGGGGCTACTACCCAAGGCTGCATAT
CGAATGGCTTCTTTGTGTAAATAACTTTTCTGTTGTACGTATTCTTGTCACGATCTCTGATCCA
TGGAACACTGCAACTGAGTGCCACTGTTACACTGATTTGTGAATAAAGATACTGACAAAC

hide sequence

RefSeq Acc Id:

XM_006255687 ⟹ XP_006255749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,285 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,464 - 44,994,019 (+)	NCBI
Rnor_6.0	19	49,457,461 - 49,479,989 (+)	NCBI
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI

Sequence:

show sequence

GCTGAGGGGGATGCAGTGCCATTCCACCGAGGCTCGGCGCGGACAGCACATAGCGCTCACTGCC
AGGAGGAGTTCAAGGCGAAGGACACTATTACTTACCTGATCCTGTCCTTCTTTTAGGAATGCCA
TGCTCCATATCACTCAGGATTAAGAATCTTCGGGAGTGCTAAGGAATGTTACATCTTGCCTTTG
GGCACCCCATCCCGAATGTCCTGATCCCCGAAGCTCATAGCCGCATCTAGCCTGAGATGGATGA
GAATGTTGCCGAGTTTCTCCGGAGGATCATCCTGAAAATCCCTCTGTGTGAGATGAAGACCATC
CTAGAAGCCTGGGACTTTTTGTCTGAAGACCAACTGCAGAGCATAAACTTGAAGCAGAGAAAGG
AATTTCTGGCCCAGGAAGTGATTCTGCTATGTGAGGACAAGTGTGCAAGTCTTGATGACATGGC
CCTTTTAGACCTCATGTATACTCAATTTCATCGGCACCAGAAGCTTTGGAATGTCTTTCAGATG
AGTAAAGAACCAGGTGGAAATGATGTGGACCTTTTTGATATGGAACAGTTCCAAAGTTCATTTA
AGAGAATTCTTCAGAGAGCATTAAAAAATGTTACGGTCAGCTTCAGAGTCTACGAGAAGAATTC
GGTGTGGATTCGGGTTGCCTGGGGAACACAGTATTCACAGCCAAACCAGTACAAGCCCACGTTT
GTTGTGTATTATCCCCAGACCCCATACGTCTTCATTTCCTCCTGCTATCTGAAGAGCACTGTGC
CCCTTCTCCATCAGGCGCTGAAAGTCGCTAGCAAACACCATCAGATGGCGCAGCTGGACCTGAG
AAGCAGGCACCTGGACTCACTCACGGCTATTGTGTTTAACGAGTATGACCAGACCTTTGAAAAT
TACAACTCCACAGCGTCTTGGCGTGAAGGAAGCCTTGGACTGAAGACAGATTTGGATTCAAAGA
TCATTCATGAAAACACAGAGGAAAAAGTGAGAATCCACAGAGCCACGCAAGAGGCCTTTGGAGC
CTATCCTCAGCCACAGCTAGAGTTCGCACAGTATAAGCTGGAAACCAAGTTCAAGAGTGACGTA
GGTGGGGGCATCTTGGCTGACAGGAAAGAGCCCCTCCGGTGCCTCGTCAAGTTCTCCAGCCCAC
ATCTTTTGGAAGCATTGAAATCCTTAGCACCAGCGGGTATAGCAGATACACCACTTTCTCCACT
GCTCACCTGCATACCAAGCAAGAAAATGAATTATTTTAAAATTAGAGATAAATGAAATGCATTT
GTCTCAGCTTTTATTGCACATGCGATTCCAGTTATAGCCGGCTAGCTCCTGCGTATAGCCTTGT
GTTTTAGGAACCAATCCTTGGCATGGGAAATTAGTGTTTCTAATGTAACTGTTAGGACTGAATC
TGTCCTCCATATGTGTGTGCACTCTCTCTTCTGAGTACAGCAGCTGTGGGCATTTGACAAGTGA
TAAATGTGTGTGTGCACACACATGCACGATCAGATCACACACACACTCGAGGCTGCAGTGATCT
CAACCCTAGGACACACAGAAGTCAAGCATAGGCACAGTGGTGAATCTGCTGTCCTTTCTCCCAC
TGCTGCTGCTTATCCTCAGAAGTCTGGTTTCTGTGGAATCTGTTACACCCTCGTTCACAGATAG
AAGAACCAAGAAACTACCCAACCCAAACCCCAAACTAGGAGAATCAATGGGGAGAGCTGGGGCT
ACTACCCAAGGCTGCATATCGAATGGCTTCTTTGTGTAAATAACTTTTCTGTTGTACGTATTCT
TGTCACGATCTCTGATCCATGGAACACTGCAACTGAGTGCCACTGTTACACTGATTTGTGAATA
AAGATACTGACAAAC

hide sequence

RefSeq Acc Id:

XM_006255689 ⟹ XP_006255751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,612 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,772 - 44,994,019 (+)	NCBI
Rnor_6.0	19	49,457,804 - 49,479,989 (+)	NCBI
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI

Sequence:

show sequence

CGGGAGCCAGGCCTCAGATCTCTACGGGGGCCTTGCCACAGCGCAGTCCCGCCACGCGATCTCG
GCCTAGGAGTGACACTAGTAGAGCCCAGTTCTTTTAGGAATGCCATGCTCCATATCACTCAGGA
TTAAGAATCTTCGGGAGTGCTAAGGAATGTTACATCTTGCCTTTGGGCACCCCATCCCGAATGT
CCTGATCCCCGAAGCTCATAGCCGCATCTAGCCTGTTCCATCACAGGATGGCAGAGGCCTTTAT
CACAGGATCGTGTGTGAGGGGCACCTAAGAAGGCAGGAGTGGTCAGTCAGATGCTGGAAGAGGC
CAGAGAGCTGGGGAAAGCCATTCAGTGCGGCCCCGCATAGCCCTAGGCAGCCTCCTTGCATCTA
ACTTGACAGCTGTCTCCTGGACTCCTGTATCCCCATCACCAGATCAACACATCCGCCAGCCCAG
AGATGGATGAGAATGTTGCCGAGTTTCTCCGGAGGATCATCCTGAAAATCCCTCTGTGTGAGAT
GAAGACCATCCTAGAAGCCTGGGACTTTTTGTCTGAAGACCAACTGCAGAGCATAAACTTGAAG
CAGAGAAAGGAATTTCTGGCCCAGGAAGTGATTCTGCTATGTGAGGACAAGTGTGCAAGTCTTG
ATGACATGGCCCTTTTAGACCTCATGTATACTCAATTTCATCGGCACCAGAAGCTTTGGAATGT
CTTTCAGATGAGTAAAGAACCAGGTGGAAATGATGTGGACCTTTTTGATATGGAACAGTTCCAA
AGTTCATTTAAGAGAATTCTTCAGAGAGCATTAAAAAATGTTACGGTCAGCTTCAGAGTCTACG
AGAAGAATTCGGTGTGGATTCGGGTTGCCTGGGGAACACAGTATTCACAGCCAAACCAGTACAA
GCCCACGTTTGTTGTGTATTATCCCCAGACCCCATACGTCTTCATTTCCTCCTGCTATCTGAAG
AGCACTGTGCCCCTTCTCCATCAGGCGCTGAAAGTCGCTAGCAAACACCATCAGATGGCGCAGC
TGGACCTGAGAAGCAGGCACCTGGACTCACTCACGGCTATTGTGTTTAACGAGTATGACCAGAC
CTTTGAAAATTACAACTCCACAGCGTCTTGGCGTGAAGGAAGCCTTGGACTGAAGACAGATTTG
GATTCAAAGATCATTCATGAAAACACAGAGGAAAAAGTGAGAATCCACAGAGCCACGCAAGAGG
CCTTTGGAGCCTATCCTCAGCCACAGCTAGAGTTCGCACAGTATAAGCTGGAAACCAAGTTCAA
GAGTGACGTAGGTGGGGGCATCTTGGCTGACAGGAAAGAGCCCCTCCGGTGCCTCGTCAAGTTC
TCCAGCCCACATCTTTTGGAAGCATTGAAATCCTTAGCACCAGCGGGTATAGCAGATACACCAC
TTTCTCCACTGCTCACCTGCATACCAAGCAAGAAAATGAATTATTTTAAAATTAGAGATAAATG
AAATGCATTTGTCTCAGCTTTTATTGCACATGCGATTCCAGTTATAGCCGGCTAGCTCCTGCGT
ATAGCCTTGTGTTTTAGGAACCAATCCTTGGCATGGGAAATTAGTGTTTCTAATGTAACTGTTA
GGACTGAATCTGTCCTCCATATGTGTGTGCACTCTCTCTTCTGAGTACAGCAGCTGTGGGCATT
TGACAAGTGATAAATGTGTGTGTGCACACACATGCACGATCAGATCACACACACACTCGAGGCT
GCAGTGATCTCAACCCTAGGACACACAGAAGTCAAGCATAGGCACAGTGGTGAATCTGCTGTCC
TTTCTCCCACTGCTGCTGCTTATCCTCAGAAGTCTGGTTTCTGTGGAATCTGTTACACCCTCGT
TCACAGATAGAAGAACCAAGAAACTACCCAACCCAAACCCCAAACTAGGAGAATCAATGGGGAG
AGCTGGGGCTACTACCCAAGGCTGCATATCGAATGGCTTCTTTGTGTAAATAACTTTTCTGTTG
TACGTATTCTTGTCACGATCTCTGATCCATGGAACACTGCAACTGAGTGCCACTGTTACACTGA
TTTGTGAATAAAGATACTGACAAAC

hide sequence

RefSeq Acc Id:

XM_006255691 ⟹ XP_006255753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,612 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,712 - 44,994,019 (+)	NCBI
Rnor_6.0	19	49,457,804 - 49,479,989 (+)	NCBI
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI

Sequence:

show sequence

CGGGAGCCAGGCCTCAGATCTCTACGGGGGCCTTGCCACAGCGCAGTCCCGCCACGCGATCTCG
GCCTAGGAGTGACACTAGTAGAGCCCAGTTCTTTTAGGAATGCCATGCTCCATATCACTCAGGA
TTAAGAATCTTCGGGAGTGCTAAGGAATGTTACATCTTGCCTTTGGGCACCCCATCCCGAATGT
CCTGATCCCCGAAGCTCATAGCCGCATCTAGCCTGAGATGGATGAGAATGTTGCCGAGTTTCTC
CGGAGGATCATCCTGAAAATCCCTCTGTGTGAGATGAAGACCATCCTAGAAGCCTGGGACTTTT
TGTCTGAAGACCAACTGCAGAGCATAAACTTGAAGCAGAGAAAGGAATTTCTGGCCCAGGAAGT
GATTCTGCTATGTGAGGACAAGTGTGCAAGTCTTGATGACATGGCCCTTTTAGACCTCATGTGT
GGAAATGATGTGGACCTTTTTGATATGGAACAGTTCCAAAGTTCATTTAAGAGAATTCTTCAGA
GAGCATTAAAAAATGTTACGGTCAGCTTCAGAGTCTACGAGAAGAATTCGGTGTGGATTCGGGT
TGCCTGGGGAACACAGTATTCACAGCCAAACCAGTACAAGCCCACGTTTGTTGTGTATTATCCC
CAGACCCCATACGTCTTCATTTCCTCCTGCTATCTGAAGAGCACTGTGCCCCTTCTCCATCAGG
CGCTGAAAGTCGCTAGCAAACACCATCAGATGGCGCAGCTGGACCTGAGAAGCAGGCACCTGGA
CTCACTCACGGCTATTGTGTTTAACGAGTATGACCAGACCTTTGAAAATTACAACTCCACAGCG
TCTTGGCGTGAAGGAAGCCTTGGACTGAAGACAGATTTGGATTCAAAGATCATTCATGAAAACA
CAGAGGAAAAAGTGAGAATCCACAGAGCCACGCAAGAGGCCTTTGGAGCCTATCCTCAGCCACA
GCTAGAGTTCGCACAGTATAAGCTGGAAACCAAGTTCAAGAGTGACGTAGGTGGGGGCATCTTG
GCTGACAGGAAAGAGCCCCTCCGGTGCCTCGTCAAGTTCTCCAGCCCACATCTTTTGGAAGCAT
TGAAATCCTTAGCACCAGCGGGTATAGCAGATACACCACTTTCTCCACTGCTCACCTGCATACC
AAGCAAGAAAATGAATTATTTTAAAATTAGAGATAAATGAAATGCATTTGTCTCAGCTTTTATT
GCACATGCGATTCCAGTTATAGCCGGCTAGCTCCTGCGTATAGCCTTGTGTTTTAGGAACCAAT
CCTTGGCATGGGAAATTAGTGTTTCTAATGTAACTGTTAGGACTGAATCTGTCCTCCATATGTG
TGTGCACTCTCTCTTCTGAGTACAGCAGCTGTGGGCATTTGACAAGTGATAAATGTGTGTGTGC
ACACACATGCACGATCAGATCACACACACACTCGAGGCTGCAGTGATCTCAACCCTAGGACACA
CAGAAGTCAAGCATAGGCACAGTGGTGAATCTGCTGTCCTTTCTCCCACTGCTGCTGCTTATCC
TCAGAAGTCTGGTTTCTGTGGAATCTGTTACACCCTCGTTCACAGATAGAAGAACCAAGAAACT
ACCCAACCCAAACCCCAAACTAGGAGAATCAATGGGGAGAGCTGGGGCTACTACCCAAGGCTGC
ATATCGAATGGCTTCTTTGTGTAAATAACTTTTCTGTTGTACGTATTCTTGTCACGATCTCTGA
TCCATGGAACACTGCAACTGAGTGCCACTGTTACACTGATTTGTGAATAAAGATACTGACAAAC

hide sequence

RefSeq Acc Id:

XM_006255692 ⟹ XP_006255754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,473 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,635 - 44,994,019 (+)	NCBI
Rnor_6.0	19	49,457,673 - 49,479,989 (+)	NCBI
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI

Sequence:

show sequence

GGGGCCCGAGCGGCCATTGGCGGCTTCGAAAGCGCCTCGGCGGGAAGTGCTGCCGGCGCGGTGG
GCGATGCGGACTGGTTAGTTCTTTTAGGAATGCCATGCTCCATATCACTCAGGATTAAGAATCT
TCGGGAGTGCTAAGGAATGTTACATCTTGCCTTTGGGCACCCCATCCCGAATGTCCTGATCCCC
GAAGCTCATAGCCGCATCTAGCCTGAGATGGATGAGAATGTTGCCGAGTTTCTCCGGAGGATCA
TCCTGAAAATCCCTCTGTGTGAGATGAAGACCATCCTAGAAGCCTGGGACTTTTTGTCTGAAGA
CCAACTGCAGAGCATAAACTTGAAGCAGAGAAAGGAATTTCTGGCCCAGGAAGTGATTCTGCTA
TGTGAGGACAAGTGTGCAAGTCTTGATGACATGGCCCTTTTAGACCTCATGTGTGGAAATGATG
TGGACCTTTTTGATATGGAACAGTTCCAAAGTTCATTTAAGAGAATTCTTCAGAGAGCATTAAA
AAATGTTACGGTCAGCTTCAGAGTCTACGAGAAGAATTCGGTGTGGATTCGGGTTGCCTGGGGA
ACACAGTATTCACAGCCAAACCAGTACAAGCCCACGTTTGTTGTGTATTATCCCCAGACCCCAT
ACGTCTTCATTTCCTCCTGCTATCTGAAGAGCACTGTGCCCCTTCTCCATCAGGCGCTGAAAGT
CGCTAGCAAACACCATCAGATGGCGCAGCTGGACCTGAGAAGCAGGCACCTGGACTCACTCACG
GCTATTGTGTTTAACGAGTATGACCAGACCTTTGAAAATTACAACTCCACAGCGTCTTGGCGTG
AAGGAAGCCTTGGACTGAAGACAGATTTGGATTCAAAGATCATTCATGAAAACACAGAGGAAAA
AGTGAGAATCCACAGAGCCACGCAAGAGGCCTTTGGAGCCTATCCTCAGCCACAGCTAGAGTTC
GCACAGTATAAGCTGGAAACCAAGTTCAAGAGTGACGTAGGTGGGGGCATCTTGGCTGACAGGA
AAGAGCCCCTCCGGTGCCTCGTCAAGTTCTCCAGCCCACATCTTTTGGAAGCATTGAAATCCTT
AGCACCAGCGGGTATAGCAGATACACCACTTTCTCCACTGCTCACCTGCATACCAAGCAAGAAA
ATGAATTATTTTAAAATTAGAGATAAATGAAATGCATTTGTCTCAGCTTTTATTGCACATGCGA
TTCCAGTTATAGCCGGCTAGCTCCTGCGTATAGCCTTGTGTTTTAGGAACCAATCCTTGGCATG
GGAAATTAGTGTTTCTAATGTAACTGTTAGGACTGAATCTGTCCTCCATATGTGTGTGCACTCT
CTCTTCTGAGTACAGCAGCTGTGGGCATTTGACAAGTGATAAATGTGTGTGTGCACACACATGC
ACGATCAGATCACACACACACTCGAGGCTGCAGTGATCTCAACCCTAGGACACACAGAAGTCAA
GCATAGGCACAGTGGTGAATCTGCTGTCCTTTCTCCCACTGCTGCTGCTTATCCTCAGAAGTCT
GGTTTCTGTGGAATCTGTTACACCCTCGTTCACAGATAGAAGAACCAAGAAACTACCCAACCCA
AACCCCAAACTAGGAGAATCAATGGGGAGAGCTGGGGCTACTACCCAAGGCTGCATATCGAATG
GCTTCTTTGTGTAAATAACTTTTCTGTTGTACGTATTCTTGTCACGATCTCTGATCCATGGAAC
ACTGCAACTGAGTGCCACTGTTACACTGATTTGTGAATAAAGATACTGACAAAC

hide sequence

RefSeq Acc Id:

XM_039097868 ⟹ XP_038953796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,101 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,265 - 44,994,019 (+)	NCBI

RefSeq Acc Id:

XM_039097869 ⟹ XP_038953797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,472 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,635 - 44,994,019 (+)	NCBI

RefSeq Acc Id:

XM_039097870 ⟹ XP_038953798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,615 - 61,902,850 (+)	NCBI
mRatBN7.2	19	44,971,775 - 44,994,019 (+)	NCBI

RefSeq Acc Id:

XM_063278143 ⟹ XP_063134213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,880,101 - 61,902,850 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008367	(Get FASTA)	NCBI Sequence Viewer
	XP_006255748	(Get FASTA)	NCBI Sequence Viewer
	XP_006255749	(Get FASTA)	NCBI Sequence Viewer
	XP_006255751	(Get FASTA)	NCBI Sequence Viewer
	XP_006255753	(Get FASTA)	NCBI Sequence Viewer
	XP_006255754	(Get FASTA)	NCBI Sequence Viewer
	XP_038953796	(Get FASTA)	NCBI Sequence Viewer
	XP_038953797	(Get FASTA)	NCBI Sequence Viewer
	XP_038953798	(Get FASTA)	NCBI Sequence Viewer
	XP_063134213	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85839	(Get FASTA)	NCBI Sequence Viewer
	AAP92658	(Get FASTA)	NCBI Sequence Viewer
	AAP92662	(Get FASTA)	NCBI Sequence Viewer
	EDL92637	(Get FASTA)	NCBI Sequence Viewer
	EDL92638	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015158
	ENSRNOP00000015158.5
	ENSRNOP00000071328
GenBank Protein	Q5U2W4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008367 ⟸ NM_001008366

- UniProtKB:

Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLD
DMALLDLMYTQFHRHQKLWNVFQMSKEPGGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYE
KNSVWIRVAWGTQYSQPNQYKPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQL
DLRSRHLDSLTAIVFNEYDQTFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEA
FGAYPQPQLEFAQYKLETKFKSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPL
SPLLTCIPSKKMNYFKIRDK

hide sequence

RefSeq Acc Id:	XP_006255749 ⟸ XM_006255687
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLD DMALLDLMYTQFHRHQKLWNVFQMSKEPGGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYE KNSVWIRVAWGTQYSQPNQYKPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQL DLRSRHLDSLTAIVFNEYDQTFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEA FGAYPQPQLEFAQYKLETKFKSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPL SPLLTCIPSKKMNYFKIRDK hide sequence

RefSeq Acc Id:	XP_006255754 ⟸ XM_006255692
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2UQ64 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLD DMALLDLMCGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYEKNSVWIRVAWGTQYSQPNQY KPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQLDLRSRHLDSLTAIVFNEYDQ TFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEAFGAYPQPQLEFAQYKLETKF KSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPLSPLLTCIPSKKMNYFKIRDK hide sequence

RefSeq Acc Id:	XP_006255751 ⟸ XM_006255689
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLD DMALLDLMYTQFHRHQKLWNVFQMSKEPGGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYE KNSVWIRVAWGTQYSQPNQYKPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQL DLRSRHLDSLTAIVFNEYDQTFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEA FGAYPQPQLEFAQYKLETKFKSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPL SPLLTCIPSKKMNYFKIRDK hide sequence

RefSeq Acc Id:	XP_006255748 ⟸ XM_006255686
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLD DMALLDLMYTQFHRHQKLWNVFQMSKEPGGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYE KNSVWIRVAWGTQYSQPNQYKPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQL DLRSRHLDSLTAIVFNEYDQTFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEA FGAYPQPQLEFAQYKLETKFKSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPL SPLLTCIPSKKMNYFKIRDK hide sequence

RefSeq Acc Id:	XP_006255753 ⟸ XM_006255691
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2UQ64 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLD DMALLDLMCGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYEKNSVWIRVAWGTQYSQPNQY KPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQLDLRSRHLDSLTAIVFNEYDQ TFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEAFGAYPQPQLEFAQYKLETKF KSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPLSPLLTCIPSKKMNYFKIRDK hide sequence

Ensembl Acc Id:

ENSRNOP00000071328 ⟸ ENSRNOT00000084445

Ensembl Acc Id:

ENSRNOP00000050945 ⟸ ENSRNOT00000042458

Ensembl Acc Id:

ENSRNOP00000015158 ⟸ ENSRNOT00000015158

RefSeq Acc Id:	XP_038953796 ⟸ XM_039097868
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953797 ⟸ XM_039097869
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953798 ⟸ XM_039097870
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2W4 (UniProtKB/Swiss-Prot), A6IZF9 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000094353 ⟸ ENSRNOT00000110763

RefSeq Acc Id:	XP_063134213 ⟸ XM_063278143
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2UQ64 (UniProtKB/TrEMBL), A0A0H2UHI9 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2W4-F1-model_v2	AlphaFold	Q5U2W4	1-340	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701166

Promoter ID:

EPDNEW_R11690

Type:

multiple initiation site

Name:

Cenpn_1

Description:

centromere protein N

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	49,457,688 - 49,457,748	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310953	AgrOrtholog
BioCyc Gene	G2FUF-5561	BioCyc
Ensembl Genes	ENSRNOG00000011296	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000015158	ENTREZGENE
	ENSRNOT00000015158.7	UniProtKB/Swiss-Prot
	ENSRNOT00000084445	ENTREZGENE
IMAGE_CLONE	IMAGE:7135799	IMAGE-MGC_LOAD
InterPro	CENP-NAC/CAD_complex	UniProtKB/Swiss-Prot
	Chl4/mis15/CENP-N	UniProtKB/Swiss-Prot
KEGG Report	rno:361416	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94524	IMAGE-MGC_LOAD
NCBI Gene	361416	ENTREZGENE
PANTHER	CENTROMERE PROTEIN N	UniProtKB/Swiss-Prot
	CENTROMERE PROTEIN N	UniProtKB/Swiss-Prot
Pfam	CENP-N	UniProtKB/Swiss-Prot
PhenoGen	Cenpn	PhenoGen
RatGTEx	ENSRNOG00000011296	RatGTEx
UniProt	A0A0H2UHI9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UQ64	ENTREZGENE, UniProtKB/TrEMBL
	A6IZF9	ENTREZGENE, UniProtKB/TrEMBL
	CENPN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q7TME4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Cenpn	centromere protein N	RGD1310953	similar to RIKEN cDNA 2610510J17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1310953	similar to RIKEN cDNA 2610510J17	RGD1310953_predicted	similar to RIKEN cDNA 2610510J17 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310953_predicted	similar to RIKEN cDNA 2610510J17 (predicted)	LOC361416_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361416_predicted	similar to RIKEN cDNA 2610510J17 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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