Cenpn (centromere protein N) - Rat Genome Database

Name: Cenpn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cenpn (centromere protein N) Ictidomys tridecemlineatus

Analyze

Symbol:

Cenpn

Name:

centromere protein N

RGD ID:

12493173

Description:

INVOLVED IN CENP-A containing chromatin assembly (inferred); chromosome segregation (inferred); ASSOCIATED WITH giant axonal neuropathy 1 (ortholog); FOUND IN inner kinetochore (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

centromere protein N, transcript variant X1; centromere protein N, transcript variant X2; centromere protein N, transcript variant X3; centromere protein N, transcript variant X4; centromere protein N, transcript variant X5

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CENPN (centromere protein N)	NCBI	Ortholog
Mus musculus (house mouse):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	30,886,647 - 30,905,934 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936475	28,683,233 - 28,702,466 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

giant axonal neuropathy 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CENP-A containing chromatin assembly (IEA)

chromosome segregation (IEA)

Cellular Component

inner kinetochore (ISO)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Cenpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	30,886,647 - 30,905,934 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936475	28,683,233 - 28,702,466 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CENPN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	81,007,214 - 81,033,107 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	81,006,552 - 81,033,114 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	81,040,819 - 81,066,712 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,597,604 - 79,624,213 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	65,338,504 - 65,365,102 (+)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,796,979 - 66,823,593 (+)	NCBI		HuRef
CHM1_1	16	82,451,471 - 82,478,069 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	87,068,448 - 87,094,631 (+)	NCBI		T2T-CHM13v2.0

Cenpn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,648,448 - 117,668,243 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,648,469 - 117,668,246 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	116,921,716 - 116,941,504 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,921,730 - 116,941,507 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,445,640 - 119,465,403 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,807,717 - 119,827,480 (+)	NCBI		MGSCv36	mm8
Celera	8	121,141,125 - 121,160,889 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	63.34	NCBI

Cenpn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,880,101 - 61,902,850 (+)	NCBI		GRCr8
mRatBN7.2	19	44,971,265 - 44,994,019 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,968,308 - 44,994,012 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	51,781,277 - 51,803,785 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,434,293 - 52,456,801 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,678,533 - 54,701,041 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,457,461 - 49,479,989 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,340,184 - 49,479,996 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	47,029,240 - 47,051,557 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	47,034,120 - 47,056,438 (+)	NCBI
Celera	19	44,244,906 - 44,267,223 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Cenpn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,804,578 - 3,818,885 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,801,856 - 3,818,675 (+)	NCBI	ChiLan1.0	ChiLan1.0

CENPN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	90,757,576 - 90,783,779 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	96,677,054 - 96,703,229 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	61,611,724 - 61,639,253 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	81,039,744 - 81,067,931 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,039,744 - 81,067,919 (+)	Ensembl	panpan1.1		panPan2

CENPN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	70,798,322 - 70,820,927 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	70,798,886 - 70,820,960 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,747,277 - 70,769,889 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	71,103,374 - 71,125,973 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	71,103,360 - 71,125,991 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	71,045,807 - 71,068,461 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	70,881,061 - 70,903,672 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,358,593 - 71,381,205 (-)	NCBI		UU_Cfam_GSD_1.0

CENPN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,227,990 - 7,254,891 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	7,227,981 - 7,254,927 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CENPN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,459,008 - 66,483,945 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,464,569 - 66,483,932 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	9,351,423 - 9,376,341 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cenpn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,306,521 - 6,330,898 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	6,309,194 - 6,331,152 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013365665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013365665 ⟹ XP_013221119

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	30,886,647 - 30,905,934 (-)	NCBI
SpeTri2.0	NW_004936475	28,683,234 - 28,702,466 (+)	NCBI

Sequence:

show sequence

TGTCATTGGTGGGTTTGAAGGCGCCTCGGCGGGTACCGCTGCTGAGGGGACTGCTGGAGATGTG
GATCGCCTCCATGAGATGAAAAGATCTCTGGCAGACACTCCATGATGTCCTGTGCTGTCCCAGG
TCCAGAGCCACGTGCCAAGCCCATGGAATGAAACCTGCCAAAGAGATGGATGAGACTGTTGCTG
AATTTATCAGGAGGACCATCTTGAAAATCCCCATGAATGAAATGATGACAATCTTAAAAGCCTG
GGATTTTTTATCTGAAAACCAACTTCAGACCATAAACTTCCGGCAGAGAAAGGAATGTCTGGTT
CAGGACTTGGTTGGGCTGTGTGAGGAGAAGTGTGCAAGTATAAACGATGCAGCCCTTCTAGACA
TCATTTATACTCAAGTACATCGGCACCAAAAAGTTTGGGATGTTTTTCAGATGAGTAAAGAACC
AGATGAAGATGTTGACCTTTTTGACATGGAACAATTCAAACGTTCATTTAAGAAAATTCTTCAG
AGAGCATTAAAAAATGTGACAATCAGCTTCAGAGATGCTGAGGAGAATGCAATCTGGATCCGAA
TTGCCTGGGGAACACAGTGTACAAAGCCGAACCAATACAAACCTACATATGTGGTGCATTACCC
CCAGACTCCCTACGCCTTCACCTCCTCCAGGCTGAAGAGCATTATGCCCCTTCTGGGTCAGGCA
CTGACAGTTGCTAGCAAACACCATCAGATTGTGAAAATGGATCTGAGAAGCCGACATCTGGACT
CTCTCAAGGCTATTGTTTTTAAACAGTATGATCAGACCTTTGAAAATCACAACTCTACAACACC
TCTACAGGAAAGATGCCTGGGACTAGATGTAAATATGGATTCAAGGATCATTCATGAAAACAAG
GTAGAAAATGAGAGAGTCCAAAGAATAACTCAAGAATCTTTTGGAGACTATCCTCAACCACAAC
TAGAATTTGCACAGTATAAGCTTGAAACGAAGTTCAAAAGTGACTTAAATGGGGGCATCTTGGC
TGAGAGGAAAGAACCCCTCCGGTGCCTAATAAAATTCTCTAGCCCACATCTTTTGGAAGCATTG
AAATCCTTAGCACCAGCTGGTATTGCAGATGCACCACTTTCTCCACTGCTCACTTGCATACCAA
ACAAGGGGATGAATTATTTTAAAATCAGAGACAAATAAGCTGTATAAGGTTTTGTAAACCCAGG
GGCTCCTTGGTGATGGTGTACAAGCATTCCAGTTAATGGCTAGATGGACAGCCTCTGGCAGTAA
TCTTTACTTTAGAAATTAATCCTTAGTATTGACAATGTAGAAGTGTTCCTATAATTTTGGGACT
GATTCTTTCCTTCTTGTGCCTCCTCTTCCACTTTTCCTGCTAAATATAGCAGTTGTGGGCATTT
GAGAGGTCACAGGATATGTATTGGGCTCTGGATTGACCTTAGTTGCACAGAATGCTCTGAAGCC
AAGCATATGACACTGTGGTTGATCCTGTTGGCCTCATATATAGTGCCCTTTTCCCCACTCCTGC
TTCTATTCAATCCTAGAGAGGACTAGTTCCTATTGTTCCTTTCTAGGGATCTTCTGTTAAGCCT
TGATCACTTAAAAGGAACTATACCCAACTCGGAACTTCTAGAAGAATCATAAAATTAGTCCATT
CAGAGAATAGAATTGGGTCTACTAATTGTTACTGGAGGAAGTTACATATCCAATGACTCATTTT
TATAAAATAATTGTTTCATTGTAAATATGATACTTTTCATAATGCATTTTATCACACATGTAAC
ATCCAAACTGACCATTATAATACTTATTTGTAAATAAAGATACTGAAAAACTGGT

hide sequence

RefSeq Acc Id:

XM_013365667 ⟹ XP_013221121

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	30,886,647 - 30,905,934 (-)	NCBI
SpeTri2.0	NW_004936475	28,683,233 - 28,702,466 (+)	NCBI

Sequence:

show sequence

CTGTCATTGGTGGGTTTGAAGGCGCCTCGGCGGGTACCGCTGCTGAGGGGACTGCTGGAGATGT
GGATCGCCTCCATGAGATGAAAAGATCTCTGGCAGACACTCCATGATGTCCTGTGCTGTCCCAG
GTCCAGAGCCACGTGCCAAGCCCATGGAATGAAACCTGCCAAAGAGATGGATGAGACTGTTGCT
GAATTTATCAGGAGGACCATCTTGAAAATCCCCATGAATGAAATGATGACAATCTTAAAAGCCT
GGGATTTTTTATCTGAAAACCAACTTCAGACCATAAACTTCCGGCAGAGAAAGGAATGTCTGGT
TCAGGACTTGGTTGGGCTGTGTGAGGAGAAGTGTGCAAGTATAAACGATGCAGCCCTTCTAGAC
ATCATTTATACTCAAGTACATCGGCACCAAAAAGTTTGGGATGTTTTTCAGATGAGTAAAGAAC
CAGATGAAGATGTTGACCTTTTTGACATGGAACAATTCAAACGTTCATTTAAGAAAATTCTTCA
GAGAGCATTAAAAAATGCACTGACAGTTGCTAGCAAACACCATCAGATTGTGAAAATGGATCTG
AGAAGCCGACATCTGGACTCTCTCAAGGCTATTGTTTTTAAACAGTATGATCAGACCTTTGAAA
ATCACAACTCTACAACACCTCTACAGGAAAGATGCCTGGGACTAGATGTAAATATGGATTCAAG
GATCATTCATGAAAACAAGGTAGAAAATGAGAGAGTCCAAAGAATAACTCAAGAATCTTTTGGA
GACTATCCTCAACCACAACTAGAATTTGCACAGTATAAGCTTGAAACGAAGTTCAAAAGTGACT
TAAATGGGGGCATCTTGGCTGAGAGGAAAGAACCCCTCCGGTGCCTAATAAAATTCTCTAGCCC
ACATCTTTTGGAAGCATTGAAATCCTTAGCACCAGCTGGTATTGCAGATGCACCACTTTCTCCA
CTGCTCACTTGCATACCAAACAAGGGGATGAATTATTTTAAAATCAGAGACAAATAAGCTGTAT
AAGGTTTTGTAAACCCAGGGGCTCCTTGGTGATGGTGTACAAGCATTCCAGTTAATGGCTAGAT
GGACAGCCTCTGGCAGTAATCTTTACTTTAGAAATTAATCCTTAGTATTGACAATGTAGAAGTG
TTCCTATAATTTTGGGACTGATTCTTTCCTTCTTGTGCCTCCTCTTCCACTTTTCCTGCTAAAT
ATAGCAGTTGTGGGCATTTGAGAGGTCACAGGATATGTATTGGGCTCTGGATTGACCTTAGTTG
CACAGAATGCTCTGAAGCCAAGCATATGACACTGTGGTTGATCCTGTTGGCCTCATATATAGTG
CCCTTTTCCCCACTCCTGCTTCTATTCAATCCTAGAGAGGACTAGTTCCTATTGTTCCTTTCTA
GGGATCTTCTGTTAAGCCTTGATCACTTAAAAGGAACTATACCCAACTCGGAACTTCTAGAAGA
ATCATAAAATTAGTCCATTCAGAGAATAGAATTGGGTCTACTAATTGTTACTGGAGGAAGTTAC
ATATCCAATGACTCATTTTTATAAAATAATTGTTTCATTGTAAATATGATACTTTTCATAATGC
ATTTTATCACACATGTAACATCCAAACTGACCATTATAATACTTATTTGTAAATAAAGATACTG
AAAAACTGGT

hide sequence

RefSeq Acc Id:

XM_021721751 ⟹ XP_021577426

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	30,886,647 - 30,905,579 (-)	NCBI
SpeTri2.0	NW_004936475	28,683,537 - 28,702,466 (+)	NCBI

Sequence:

show sequence

CTTTCAAGCCGCGCTGAGGTCACGTGGCGGAAGACGCTGCGTTCAGCTGTGGATTTCTAAGCCT
CCATGAGATGAAAAGATCTCTGGCAGACACTCCATGATGTCCTGTGCTGTCCCAGGTCCAGAGC
CACGTGCCAAGCCCATGGAATGAAACCTGCCAAAGAGATGGATGAGACTGTTGCTGAATTTATC
AGGAGGACCATCTTGAAAATCCCCATGAATGAAATGATGACAATCTTAAAAGCCTGGGATTTTT
TATCTGAAAACCAACTTCAGACCATAAACTTCCGGCAGAGAAAGGAATGTCTGGTTCAGGACTT
GGTTGGGCTGTGTGAGGAGAAGTGTGCAAGTATAAACGATGCAGCCCTTCTAGACATCATTTAT
ACTCAAGTACATCGGCACCAAAAAGTTTGGGATGTTTTTCAGATGAGTAAAGAACCAGATGAAG
ATGTTGACCTTTTTGACATGGAACAATTCAAACGTTCATTTAAGAAAATTCTTCAGAGAGCATT
AAAAAATGTGACAATCAGCTTCAGAGATGCTGAGGAGAATGCAATCTGGATCCGAATTGCCTGG
GGAACACAGTGTACAAAGCCGAACCAATACAAACCTACATATGTGGTGCATTACCCCCAGACTC
CCTACGCCTTCACCTCCTCCAGGCTGAAGAGCATTATGCCCCTTCTGGGTCAGGCACTGACAGT
TGCTAGCAAACACCATCAGATTGTGAAAATGGATCTGAGAAGCCGACATCTGGACTCTCTCAAG
GCTATTGTTTTTAAACAGTATGATCAGACCTTTGAAAATCACAACTCTACAACACCTCTACAGG
AAAGATGCCTGGGACTAGATGTAAATATGGATTCAAGGATCATTCATGAAAACAAGGTAGAAAA
TGAGAGAGTCCAAAGAATAACTCAAGAATCTTTTGGAGACTATCCTCAACCACAACTAGAATTT
GCACAGTATAAGCTTGAAACGAAGTTCAAAAGTGACTTAAATGGGGGCATCTTGGCTGAGAGGA
AAGAACCCCTCCGGTGCCTAATAAAATTCTCTAGCCCACATCTTTTGGAAGCATTGAAATCCTT
AGCACCAGCTGGTATTGCAGATGCACCACTTTCTCCACTGCTCACTTGCATACCAAACAAGGGG
ATGAATTATTTTAAAATCAGAGACAAATAAGCTGTATAAGGTTTTGTAAACCCAGGGGCTCCTT
GGTGATGGTGTACAAGCATTCCAGTTAATGGCTAGATGGACAGCCTCTGGCAGTAATCTTTACT
TTAGAAATTAATCCTTAGTATTGACAATGTAGAAGTGTTCCTATAATTTTGGGACTGATTCTTT
CCTTCTTGTGCCTCCTCTTCCACTTTTCCTGCTAAATATAGCAGTTGTGGGCATTTGAGAGGTC
ACAGGATATGTATTGGGCTCTGGATTGACCTTAGTTGCACAGAATGCTCTGAAGCCAAGCATAT
GACACTGTGGTTGATCCTGTTGGCCTCATATATAGTGCCCTTTTCCCCACTCCTGCTTCTATTC
AATCCTAGAGAGGACTAGTTCCTATTGTTCCTTTCTAGGGATCTTCTGTTAAGCCTTGATCACT
TAAAAGGAACTATACCCAACTCGGAACTTCTAGAAGAATCATAAAATTAGTCCATTCAGAGAAT
AGAATTGGGTCTACTAATTGTTACTGGAGGAAGTTACATATCCAATGACTCATTTTTATAAAAT
AATTGTTTCATTGTAAATATGATACTTTTCATAATGCATTTTATCACACATGTAACATCCAAAC
TGACCATTATAATACTTATTTGTAAATAAAGATACTGAAAAACTGGT

hide sequence

RefSeq Acc Id:

XM_021721754 ⟹ XP_021577429

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	30,886,647 - 30,902,557 (-)	NCBI
SpeTri2.0	NW_004936475	28,686,325 - 28,702,466 (+)	NCBI

Sequence:

show sequence

CTGGTTCAGGACTTGGTTGGGCTGTGTGAGCATAACTCTCCAAGGCCAGAAATAAAGGGAGACC
CCAGGAGATAAGAGATGTCAACAAAATTTAGGATGCTGGAAAACAGAACAACAATATGAAAAAT
GAAAAGGAGAAGTGTGCAAGTATAAACGATGCAGCCCTTCTAGACATCATTTATACTCAAGTAC
ATCGGCACCAAAAAGTTTGGGATGTTTTTCAGATGAGTAAAGAACCAGATGAAGATGTTGACCT
TTTTGACATGGAACAATTCAAACGTTCATTTAAGAAAATTCTTCAGAGAGCATTAAAAAATGTG
ACAATCAGCTTCAGAGATGCTGAGGAGAATGCAATCTGGATCCGAATTGCCTGGGGAACACAGT
GTACAAAGCCGAACCAATACAAACCTACATATGTGGTGCATTACCCCCAGACTCCCTACGCCTT
CACCTCCTCCAGGCTGAAGAGCATTATGCCCCTTCTGGGTCAGGCACTGACAGTTGCTAGCAAA
CACCATCAGATTGTGAAAATGGATCTGAGAAGCCGACATCTGGACTCTCTCAAGGCTATTGTTT
TTAAACAGTATGATCAGACCTTTGAAAATCACAACTCTACAACACCTCTACAGGAAAGATGCCT
GGGACTAGATGTAAATATGGATTCAAGGATCATTCATGAAAACAAGGTAGAAAATGAGAGAGTC
CAAAGAATAACTCAAGAATCTTTTGGAGACTATCCTCAACCACAACTAGAATTTGCACAGTATA
AGCTTGAAACGAAGTTCAAAAGTGACTTAAATGGGGGCATCTTGGCTGAGAGGAAAGAACCCCT
CCGGTGCCTAATAAAATTCTCTAGCCCACATCTTTTGGAAGCATTGAAATCCTTAGCACCAGCT
GGTATTGCAGATGCACCACTTTCTCCACTGCTCACTTGCATACCAAACAAGGGGATGAATTATT
TTAAAATCAGAGACAAATAAGCTGTATAAGGTTTTGTAAACCCAGGGGCTCCTTGGTGATGGTG
TACAAGCATTCCAGTTAATGGCTAGATGGACAGCCTCTGGCAGTAATCTTTACTTTAGAAATTA
ATCCTTAGTATTGACAATGTAGAAGTGTTCCTATAATTTTGGGACTGATTCTTTCCTTCTTGTG
CCTCCTCTTCCACTTTTCCTGCTAAATATAGCAGTTGTGGGCATTTGAGAGGTCACAGGATATG
TATTGGGCTCTGGATTGACCTTAGTTGCACAGAATGCTCTGAAGCCAAGCATATGACACTGTGG
TTGATCCTGTTGGCCTCATATATAGTGCCCTTTTCCCCACTCCTGCTTCTATTCAATCCTAGAG
AGGACTAGTTCCTATTGTTCCTTTCTAGGGATCTTCTGTTAAGCCTTGATCACTTAAAAGGAAC
TATACCCAACTCGGAACTTCTAGAAGAATCATAAAATTAGTCCATTCAGAGAATAGAATTGGGT
CTACTAATTGTTACTGGAGGAAGTTACATATCCAATGACTCATTTTTATAAAATAATTGTTTCA
TTGTAAATATGATACTTTTCATAATGCATTTTATCACACATGTAACATCCAAACTGACCATTAT
AATACTTATTTGTAAATAAAGATACTGAAAAACTGGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_013221119	(Get FASTA)	NCBI Sequence Viewer
	XP_013221121	(Get FASTA)	NCBI Sequence Viewer
	XP_021577426	(Get FASTA)	NCBI Sequence Viewer
	XP_021577429	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006566.3
GenBank Protein	KAG3256790	(Get FASTA)	NCBI Sequence Viewer
	KAG3256791	(Get FASTA)	NCBI Sequence Viewer
	KAG3256792	(Get FASTA)	NCBI Sequence Viewer
	KAG3256793	(Get FASTA)	NCBI Sequence Viewer
	KAG3256794	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013221119 ⟸ XM_013365665

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKPAKEMDETVAEFIRRTILKIPMNEMMTILKAWDFLSENQLQTINFRQRKECLVQDLVGLCEE
KCASINDAALLDIIYTQVHRHQKVWDVFQMSKEPDEDVDLFDMEQFKRSFKKILQRALKNVTIS
FRDAEENAIWIRIAWGTQCTKPNQYKPTYVVHYPQTPYAFTSSRLKSIMPLLGQALTVASKHHQ
IVKMDLRSRHLDSLKAIVFKQYDQTFENHNSTTPLQERCLGLDVNMDSRIIHENKVENERVQRI
TQESFGDYPQPQLEFAQYKLETKFKSDLNGGILAERKEPLRCLIKFSSPHLLEALKSLAPAGIA
DAPLSPLLTCIPNKGMNYFKIRDK

hide sequence

RefSeq Acc Id:

XP_013221121 ⟸ XM_013365667

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKPAKEMDETVAEFIRRTILKIPMNEMMTILKAWDFLSENQLQTINFRQRKECLVQDLVGLCEE
KCASINDAALLDIIYTQVHRHQKVWDVFQMSKEPDEDVDLFDMEQFKRSFKKILQRALKNALTV
ASKHHQIVKMDLRSRHLDSLKAIVFKQYDQTFENHNSTTPLQERCLGLDVNMDSRIIHENKVEN
ERVQRITQESFGDYPQPQLEFAQYKLETKFKSDLNGGILAERKEPLRCLIKFSSPHLLEALKSL
APAGIADAPLSPLLTCIPNKGMNYFKIRDK

hide sequence

RefSeq Acc Id:

XP_021577426 ⟸ XM_021721751

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKPAKEMDETVAEFIRRTILKIPMNEMMTILKAWDFLSENQLQTINFRQRKECLVQDLVGLCEE
KCASINDAALLDIIYTQVHRHQKVWDVFQMSKEPDEDVDLFDMEQFKRSFKKILQRALKNVTIS
FRDAEENAIWIRIAWGTQCTKPNQYKPTYVVHYPQTPYAFTSSRLKSIMPLLGQALTVASKHHQ
IVKMDLRSRHLDSLKAIVFKQYDQTFENHNSTTPLQERCLGLDVNMDSRIIHENKVENERVQRI
TQESFGDYPQPQLEFAQYKLETKFKSDLNGGILAERKEPLRCLIKFSSPHLLEALKSLAPAGIA
DAPLSPLLTCIPNKGMNYFKIRDK

hide sequence

RefSeq Acc Id:	XP_021577429 ⟸ XM_021721754
- Peptide Label:	isoform X3
- UniProtKB:	I3M9J5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKNEKEKCASINDAALLDIIYTQVHRHQKVWDVFQMSKEPDEDVDLFDMEQFKRSFKKILQRAL KNVTISFRDAEENAIWIRIAWGTQCTKPNQYKPTYVVHYPQTPYAFTSSRLKSIMPLLGQALTV ASKHHQIVKMDLRSRHLDSLKAIVFKQYDQTFENHNSTTPLQERCLGLDVNMDSRIIHENKVEN ERVQRITQESFGDYPQPQLEFAQYKLETKFKSDLNGGILAERKEPLRCLIKFSSPHLLEALKSL APAGIADAPLSPLLTCIPNKGMNYFKIRDK hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007345	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007349.3	UniProtKB/TrEMBL
InterPro	Chl4/mis15/CENP-N	UniProtKB/TrEMBL
NCBI Gene	Cenpn	ENTREZGENE
PANTHER	CENTROMERE PROTEIN N	UniProtKB/TrEMBL
	CENTROMERE PROTEIN N	UniProtKB/TrEMBL
Pfam	CENP-N	UniProtKB/TrEMBL
UniProt	I3M9J5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar