Cenpn (centromere protein N) - Rat Genome Database

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Gene: Cenpn (centromere protein N) Heterocephalus glaber
Analyze
Symbol: Cenpn
Name: centromere protein N
RGD ID: 18936729
Description: INVOLVED IN CENP-A containing chromatin assembly (inferred); chromosome segregation (inferred); ASSOCIATED WITH giant axonal neuropathy 1 (ortholog); FOUND IN inner kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247466,306,521 - 6,330,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247466,309,194 - 6,331,152 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cenpn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247466,306,521 - 6,330,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247466,309,194 - 6,331,152 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CENPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381681,007,214 - 81,033,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1681,006,552 - 81,033,114 (+)EnsemblGRCh38hg38GRCh38
GRCh371681,040,819 - 81,066,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,597,604 - 79,624,213 (+)NCBINCBI36Build 36hg18NCBI36
Celera1665,338,504 - 65,365,102 (+)NCBICelera
Cytogenetic Map16q23.2NCBI
HuRef1666,796,979 - 66,823,593 (+)NCBIHuRef
CHM1_11682,451,471 - 82,478,069 (+)NCBICHM1_1
T2T-CHM13v2.01687,068,448 - 87,094,631 (+)NCBIT2T-CHM13v2.0
Cenpn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,648,448 - 117,668,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8117,648,469 - 117,668,246 (+)EnsemblGRCm39 Ensembl
GRCm388116,921,716 - 116,941,504 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,921,730 - 116,941,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv378119,445,640 - 119,465,403 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368119,807,717 - 119,827,480 (+)NCBIMGSCv36mm8
Celera8121,141,125 - 121,160,889 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map863.34NCBI
Cenpn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81961,880,101 - 61,902,850 (+)NCBIGRCr8
mRatBN7.21944,971,265 - 44,994,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1944,968,308 - 44,994,012 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1951,781,277 - 51,803,785 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01952,434,293 - 52,456,801 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01954,678,533 - 54,701,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01949,457,461 - 49,479,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,340,184 - 49,479,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01960,248,687 - 60,271,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,029,240 - 47,051,557 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11947,034,120 - 47,056,438 (+)NCBI
Celera1944,244,906 - 44,267,223 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cenpn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,804,578 - 3,818,885 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,801,856 - 3,818,675 (+)NCBIChiLan1.0ChiLan1.0
CENPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21890,757,576 - 90,783,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11696,677,054 - 96,703,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01661,611,724 - 61,639,253 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11681,039,744 - 81,067,931 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1681,039,744 - 81,067,919 (+)Ensemblpanpan1.1panPan2
CENPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1570,798,322 - 70,820,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl570,798,886 - 70,820,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha570,747,277 - 70,769,889 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0571,103,374 - 71,125,973 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl571,103,360 - 71,125,991 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1571,045,807 - 71,068,461 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0570,881,061 - 70,903,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0571,358,593 - 71,381,205 (-)NCBIUU_Cfam_GSD_1.0
Cenpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934930,886,647 - 30,905,934 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647528,683,233 - 28,702,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl67,227,990 - 7,254,891 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.167,227,981 - 7,254,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CENPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1566,459,008 - 66,483,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl566,464,569 - 66,483,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660479,351,423 - 9,376,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021305   ⟹   ENSHGLP00000021102
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247466,306,521 - 6,330,898 (-)Ensembl
RefSeq Acc Id: XM_004842807   ⟹   XP_004842864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247466,309,194 - 6,331,074 (-)NCBI
RefSeq Acc Id: XM_004842808   ⟹   XP_004842865
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247466,309,194 - 6,330,120 (-)NCBI
RefSeq Acc Id: XM_021256676   ⟹   XP_021112335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247466,309,194 - 6,330,165 (-)NCBI
RefSeq Acc Id: XM_021256677   ⟹   XP_021112336
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247466,309,194 - 6,331,152 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842864 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842865 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112335 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112336 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021102
GenBank Protein JAO01427 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021112336   ⟸   XM_021256677
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JIZ8 (UniProtKB/TrEMBL),   G5B1X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842864   ⟸   XM_004842807
- Peptide Label: isoform X1
- UniProtKB: G5B1X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112335   ⟸   XM_021256676
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JIZ8 (UniProtKB/TrEMBL),   G5B1X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842865   ⟸   XM_004842808
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JIZ8 (UniProtKB/TrEMBL),   G5B1X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021102   ⟸   ENSHGLT00000021305


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015076 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021305 ENTREZGENE
InterPro Chl4/mis15/CENP-N UniProtKB/TrEMBL
NCBI Gene Cenpn ENTREZGENE
PANTHER CENTROMERE PROTEIN N UniProtKB/TrEMBL
  CENTROMERE PROTEIN N UniProtKB/TrEMBL
Pfam CENP-N UniProtKB/TrEMBL
UniProt A0A0P6JIZ8 ENTREZGENE, UniProtKB/TrEMBL
  G5B1X8 ENTREZGENE, UniProtKB/TrEMBL