Polr2j (RNA polymerase II subunit J) - Rat Genome Database

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Gene: Polr2j (RNA polymerase II subunit J) Rattus norvegicus
Analyze
Symbol: Polr2j
Name: RNA polymerase II subunit J
RGD ID: 1310198
Description: Predicted to enable LRR domain binding activity. Predicted to contribute to DNA-directed RNA polymerase activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Orthologous to several human genes including POLR2J (RNA polymerase II subunit J); PARTICIPATES IN RNA polymerase II transcription pathway; Huntington's disease pathway; purine metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-directed RNA polymerase II subunit RPB11-a; LOC288588; polymerase (RNA) II (DNA directed) polypeptide J; polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa; polymerase (RNA) II subunit J
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,179,649 - 26,185,201 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1226,179,649 - 26,185,201 (-)EnsemblGRCr8
mRatBN7.21220,543,038 - 20,548,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,543,038 - 20,548,594 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1221,683,016 - 21,688,571 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,295,721 - 22,301,276 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,361,193 - 21,366,748 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1227,452,029 - 27,457,584 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1227,376,946 - 27,382,499 (-)NCBILyon_Normotensive
Lyon_Hypertensive1226,237,158 - 26,242,713 (-)NCBILyon_Hypertensive
F344_StmMcwi1236,688,341 - 36,693,893 (-)NCBIF344_StmMcwi
Rnor_6.01223,587,222 - 23,592,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,587,222 - 23,592,774 (-)Ensemblrn6Rnor6.0
Rnor_5.01225,587,572 - 25,593,124 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41221,658,406 - 21,663,958 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1222,311,433 - 22,316,972 (-)NCBICelera
RGSC_v3.11221,649,381 - 21,654,560 (-)NCBI
Cytogenetic Map12q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. TFIIB-related factors in RNA polymerase I transcription. Knutson BA and Hahn S, Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):265-73. doi: 10.1016/j.bbagrm.2012.08.003. Epub 2012 Aug 30.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9099876   PMID:9268387   PMID:9852112   PMID:10783144   PMID:16141233  


Genomics

Comparative Map Data
Polr2j
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,179,649 - 26,185,201 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1226,179,649 - 26,185,201 (-)EnsemblGRCr8
mRatBN7.21220,543,038 - 20,548,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,543,038 - 20,548,594 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1221,683,016 - 21,688,571 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,295,721 - 22,301,276 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,361,193 - 21,366,748 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1227,452,029 - 27,457,584 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1227,376,946 - 27,382,499 (-)NCBILyon_Normotensive
Lyon_Hypertensive1226,237,158 - 26,242,713 (-)NCBILyon_Hypertensive
F344_StmMcwi1236,688,341 - 36,693,893 (-)NCBIF344_StmMcwi
Rnor_6.01223,587,222 - 23,592,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,587,222 - 23,592,774 (-)Ensemblrn6Rnor6.0
Rnor_5.01225,587,572 - 25,593,124 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41221,658,406 - 21,663,958 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1222,311,433 - 22,316,972 (-)NCBICelera
RGSC_v3.11221,649,381 - 21,654,560 (-)NCBI
Cytogenetic Map12q12NCBI
POLR2J
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387102,473,128 - 102,478,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7102,473,128 - 102,478,929 (-)Ensemblhg38GRCh38
GRCh377102,113,575 - 102,119,369 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,900,552 - 101,906,386 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347101,707,623 - 101,713,077NCBI
Celera797,125,817 - 97,127,251 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef796,703,776 - 96,705,210 (-)NCBIHuRef
CHM1_17102,043,567 - 102,049,407 (-)NCBICHM1_1
T2T-CHM13v2.07103,790,727 - 103,796,555 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27101,473,848 - 101,479,682 (-)NCBI
Polr2j
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,145,545 - 136,151,801 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,145,485 - 136,151,801 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385136,116,691 - 136,122,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,116,631 - 136,122,947 (+)Ensemblmm10GRCm38
MGSCv375136,592,561 - 136,598,817 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365136,401,364 - 136,407,566 (+)NCBIMGSCv36mm8
Celera5133,137,045 - 133,143,301 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.8NCBI
Polr2j
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,146,713 - 15,151,311 (+)Ensembl
ChiLan1.0NW_00495545615,146,713 - 15,151,320 (+)NCBIChiLan1.0ChiLan1.0
POLR2J
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,707,426 - 7,710,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,402,443 - 9,405,898 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.067,527,599 - 7,531,054 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,527,645 - 7,531,266 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,496,109 - 7,499,564 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,459,175 - 7,462,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,622,887 - 7,626,343 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Polr2j
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,136,578 - 132,140,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,895,828 - 1,899,904 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,895,827 - 1,899,918 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR2J
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,812,441 - 9,816,656 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.139,812,746 - 9,816,657 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,695,498 - 9,699,407 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR2J
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,742,636 - 10,748,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,742,570 - 10,749,382 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660705,660,475 - 5,666,066 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr2j
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,169,459 - 15,173,805 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474015,169,414 - 15,174,212 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Polr2j
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11617,887,914 - 17,893,218 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Polr2j
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:113
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000001941
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)122013902826430640Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH132174  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81226,179,313 - 26,179,627 (+)Marker Load Pipeline
mRatBN7.21220,542,702 - 20,543,016 (+)MAPPERmRatBN7.2
Rnor_6.01223,586,887 - 23,587,200NCBIRnor6.0
Rnor_5.01225,587,237 - 25,587,550UniSTSRnor5.0
RGSC_v3.41221,658,071 - 21,658,384UniSTSRGSC3.4
Celera1222,311,098 - 22,311,411UniSTS
RH 3.4 Map12298.11UniSTS
Cytogenetic Map12q12UniSTS
RH134388  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81226,179,925 - 26,180,670 (+)Marker Load Pipeline
mRatBN7.21220,543,314 - 20,544,059 (+)MAPPERmRatBN7.2
Rnor_6.01223,587,499 - 23,588,243NCBIRnor6.0
Rnor_5.01225,587,849 - 25,588,593UniSTSRnor5.0
RGSC_v3.41221,658,683 - 21,659,427UniSTSRGSC3.4
Celera1222,311,710 - 22,312,454UniSTS
RH 3.4 Map12300.5UniSTS
Cytogenetic Map12q12UniSTS
GDB:4585697  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,545,862 - 20,545,946 (+)MAPPERmRatBN7.2
Rnor_6.01223,590,047 - 23,590,130NCBIRnor6.0
Rnor_5.01225,590,397 - 25,590,480UniSTSRnor5.0
RGSC_v3.41221,661,231 - 21,661,314UniSTSRGSC3.4
Celera1222,314,258 - 22,314,341UniSTS
Cytogenetic Map12q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001941   ⟹   ENSRNOP00000001941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1226,179,649 - 26,185,201 (-)Ensembl
mRatBN7.2 Ensembl1220,543,038 - 20,548,590 (-)Ensembl
Rnor_6.0 Ensembl1223,587,222 - 23,592,774 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098210   ⟹   ENSRNOP00000097097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,543,198 - 20,548,594 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116070   ⟹   ENSRNOP00000096502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1226,179,649 - 26,185,149 (-)Ensembl
mRatBN7.2 Ensembl1220,543,038 - 20,548,538 (-)Ensembl
RefSeq Acc Id: NM_001105921   ⟹   NP_001099391
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,179,649 - 26,185,201 (-)NCBI
mRatBN7.21220,543,038 - 20,548,590 (-)NCBI
Dahl_SR_JrHsd1227,452,029 - 27,457,584 (-)NCBI
Lyon_Normotensive1227,376,946 - 27,382,499 (-)NCBI
Lyon_Hypertensive1226,237,158 - 26,242,713 (-)NCBI
F344_StmMcwi1236,688,341 - 36,693,893 (-)NCBI
Rnor_6.01223,587,222 - 23,592,774 (-)NCBI
Rnor_5.01225,587,572 - 25,593,124 (-)NCBI
RGSC_v3.41221,658,406 - 21,663,958 (-)RGD
Celera1222,311,433 - 22,316,972 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099391 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM13324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001941
  ENSRNOP00000001941.3
  ENSRNOP00000096502.1
RefSeq Acc Id: NP_001099391   ⟸   NM_001105921
- UniProtKB: D3ZQI0 (UniProtKB/TrEMBL),   A6J085 (UniProtKB/TrEMBL),   A0A8I6GMD7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001941   ⟸   ENSRNOT00000001941
Ensembl Acc Id: ENSRNOP00000097097   ⟸   ENSRNOT00000098210
Ensembl Acc Id: ENSRNOP00000096502   ⟸   ENSRNOT00000116070
Protein Domains
DNA-directed RNA polymerase RBP11-like dimerisation

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQI0-F1-model_v2 AlphaFold D3ZQI0 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698541
Promoter ID:EPDNEW_R9064
Type:initiation region
Name:Polr2j_1
Description:RNA polymerase II subunit J
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,592,749 - 23,592,809EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310198 AgrOrtholog
BioCyc Gene G2FUF-19653 BioCyc
Ensembl Genes ENSRNOG00000001430 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001941 ENTREZGENE
  ENSRNOT00000001941.5 UniProtKB/TrEMBL
  ENSRNOT00000116070.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1360.10 UniProtKB/TrEMBL
InterPro DNA-dir_RNA_pol_RBP11-like UniProtKB/TrEMBL
  RBP11 UniProtKB/TrEMBL
  RBP11-like UniProtKB/TrEMBL
  RNA_pol_Rpb11_13-16kDa_CS UniProtKB/TrEMBL
  Rpo11-like UniProtKB/TrEMBL
KEGG Report rno:288588 UniProtKB/TrEMBL
NCBI Gene 288588 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III UniProtKB/TrEMBL
  DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 UniProtKB/TrEMBL
Pfam RNA_pol_L_2 UniProtKB/TrEMBL
PhenoGen Polr2j PhenoGen
PROSITE RNA_POL_L_13KD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001430 RatGTEx
Superfamily-SCOP RNAP_RBP11-like UniProtKB/TrEMBL
UniProt A0A8I6B4A8_RAT UniProtKB/TrEMBL
  A0A8I6GMD7 ENTREZGENE
  A6J085 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-21 Polr2j  RNA polymerase II subunit J  Polr2j  polymerase (RNA) II subunit J  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-16 Polr2j  polymerase (RNA) II subunit J  Polr2j  polymerase (RNA) II (DNA directed) polypeptide J  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-10-22 Polr2j  polymerase (RNA) II (DNA directed) polypeptide J  Polr2j  polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Polr2j  polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa  Polr2j  polymerase (RNA) II (DNA directed) polypeptide J   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Polr2j  polymerase (RNA) II (DNA directed) polypeptide J   Polr2j_predicted  polymerase (RNA) II (DNA directed) polypeptide J (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Polr2j_predicted  polymerase (RNA) II (DNA directed) polypeptide J (predicted)      Symbol and Name status set to approved 70820 APPROVED