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Gene: Galk2 (galactokinase 2) Rattus norvegicus

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Symbol:

Galk2

Name:

galactokinase 2

RGD ID:

1308691

Description:

Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human GALK2 (galactokinase 2); PARTICIPATES IN amino sugar metabolic pathway; galactose metabolic pathway; nucleotide sugar metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

galactokinase 2 (predicted); Galk2_predicted; galNAc kinase; LOC296117; LOC362209; N-acetylgalactosamine kinase; similar to N-acetylgalactosamine kinase (GalNAc kinase) (Galactokinase 2)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GALK2 (galactokinase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Galk2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Galk2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GALK2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GALK2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Galk2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GALK2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GALK2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Galk2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Galk2 (galactokinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GALK2 (galactokinase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Galk2 (galactokinase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	galk2 (galactokinase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GAL1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Galk	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tag-96	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GAL3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	galk2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	galk2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	133,563,524 - 133,696,423 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	133,563,538 - 133,696,528 (+)	Ensembl				GRCr8
mRatBN7.2	3	113,110,057 - 113,243,014 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	113,110,030 - 113,233,306 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	116,983,472 - 117,108,681 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	125,578,994 - 125,704,199 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	123,239,365 - 123,364,567 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	118,137,097 - 118,268,838 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	118,136,838 - 118,268,836 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	124,661,798 - 124,793,303 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	113,173,734 - 113,418,061 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	111,972,145 - 112,085,987 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cobalt atom (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

endosulfan (EXP)

ethanol (ISO)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

methidathion (ISO)

methimazole (EXP)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

nicotine (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

progesterone (ISO)

propiconazole (EXP)

quercitrin (ISO)

resveratrol (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tamibarotene (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

Tungsten carbide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate phosphorylation (IEA)

galactose metabolic process (IBA,IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IBA)

Molecular Function

ATP binding (IEA)

galactokinase activity (IBA,IEA,ISO)

kinase activity (IEA)

N-acetylgalactosamine kinase activity (IEA)

nucleotide binding (IEA)

phosphotransferase activity, alcohol group as acceptor (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

amino sugar metabolic pathway (IEA)

galactose metabolic pathway (IEA)

nucleotide sugar metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:7542884	PMID:15489334

Genomics

Comparative Map Data

Galk2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	133,563,524 - 133,696,423 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	133,563,538 - 133,696,528 (+)	Ensembl				GRCr8
mRatBN7.2	3	113,110,057 - 113,243,014 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	113,110,030 - 113,233,306 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	116,983,472 - 117,108,681 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	125,578,994 - 125,704,199 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	123,239,365 - 123,364,567 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	118,137,097 - 118,268,838 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	118,136,838 - 118,268,836 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	124,661,798 - 124,793,303 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	113,173,734 - 113,418,061 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	111,972,145 - 112,085,987 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

GALK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	49,155,774 - 49,367,740 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	49,155,656 - 49,367,869 (+)	Ensembl			hg38	GRCh38
GRCh37	15	49,447,971 - 49,624,079 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	47,235,268 - 47,409,294 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	47,249,713 - 47,409,294	NCBI
Celera	15	26,341,552 - 26,515,592 (+)	NCBI		Celera
Cytogenetic Map	15	q21.1-q21.2	NCBI
HuRef	15	26,280,047 - 26,453,966 (+)	NCBI		HuRef
CHM1_1	15	49,566,269 - 49,740,116 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	46,963,986 - 47,175,984 (+)	NCBI		T2T-CHM13v2.0

Galk2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	125,701,029 - 125,826,218 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	125,701,029 - 125,826,219 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	125,859,109 - 125,984,298 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	125,859,109 - 125,984,299 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	125,684,954 - 125,810,034 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	125,550,659 - 125,675,739 (+)	NCBI		MGSCv36	mm8
Celera	2	127,103,240 - 127,227,668 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	61.76	NCBI

Galk2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	4,751,764 - 4,860,584 (-)	Ensembl
ChiLan1.0	NW_004955409	4,751,764 - 4,852,395 (-)	NCBI	ChiLan1.0	ChiLan1.0

GALK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	38,395,302 - 38,570,415 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	42,579,383 - 42,754,295 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	28,103,719 - 28,278,718 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	46,426,500 - 46,601,713 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	46,440,759 - 46,600,440 (+)	Ensembl			panPan2	panpan1.1

GALK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	15,365,659 - 15,494,681 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	15,365,690 - 15,494,307 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	15,289,459 - 15,419,903 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	15,501,612 - 15,638,828 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	15,501,581 - 15,752,197 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	15,425,107 - 15,562,222 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	15,546,581 - 15,677,191 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	15,652,501 - 15,781,917 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Galk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	93,589,122 - 93,724,080 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	11,437,384 - 11,572,237 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	11,448,689 - 11,572,102 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	122,369,545 - 122,542,222 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	122,370,616 - 122,542,287 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	136,147,563 - 136,319,400 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	33,973,843 - 34,136,345 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	33,969,657 - 34,122,115 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	106,992,233 - 107,155,570 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Galk2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	10,533,174 - 10,642,836 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	10,533,443 - 10,642,561 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Galk2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	104,187,980 - 104,304,452 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Galk2
562 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	31
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000012447
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	122654702	136118980	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC139594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012447 ⟹ ENSRNOP00000012447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,563,687 - 133,686,702 (+)	Ensembl
mRatBN7.2 Ensembl	3	113,117,540 - 113,233,300 (+)	Ensembl
Rnor_6.0 Ensembl	3	118,144,596 - 118,268,836 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079023 ⟹ ENSRNOP00000069500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,563,545 - 133,686,700 (+)	Ensembl
mRatBN7.2 Ensembl	3	113,110,093 - 113,233,306 (+)	Ensembl
Rnor_6.0 Ensembl	3	118,144,672 - 118,268,517 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083356 ⟹ ENSRNOP00000068802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,563,538 - 133,686,701 (+)	Ensembl
mRatBN7.2 Ensembl	3	113,110,030 - 113,233,302 (+)	Ensembl
Rnor_6.0 Ensembl	3	118,136,838 - 118,268,715 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127430 ⟹ ENSRNOP00000107937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,570,948 - 133,696,528 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135446 ⟹ ENSRNOP00000108122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,570,948 - 133,696,389 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155477 ⟹ ENSRNOP00000107373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,570,948 - 133,683,791 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161790 ⟹ ENSRNOP00000109188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	133,593,033 - 133,687,673 (+)	Ensembl

RefSeq Acc Id:

NM_001013919 ⟹ NP_001013941

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,964 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,117,556 - 113,233,304 (+)	NCBI
Rnor_6.0	3	118,144,596 - 118,268,838 (+)	NCBI
Rnor_5.0	3	124,661,798 - 124,793,303 (+)	NCBI
RGSC_v3.4	3	113,173,734 - 113,418,061 (+)	RGD
Celera	3	111,972,145 - 112,085,987 (+)	RGD

Sequence:

show sequence

GCTATTCCTGCCACTTTAATCTCGTGATCCTTAGCTGTGCTGCACTTCTGGAAACCGCATAGGG
ATCTAGCAAAATATGGCTGCGGAGGACCCCGCCACGCGACGAGTCCAAGTGGCAGAACACCCCA
GATTGCTGAAGCTAAAAGAGATGTTCAACTCTAAGTTTGGGTCCACACCCAAGTTTTATGTTCG
AGCCCCAGGAAGAGTGAACATAATAGGTGAGCACATAGATTACTGTGGGTACTCTGTTCTCCCC
ATGGCTGTGGAGCAGGACATGCTAATAGCTGTGGGACCTGTGAAAACCCAGACTCTCCAACTGG
CCAATACAGACCCCTTGTATCCAGACTTCAGTACTACAGCTAATAACATCTGTATCGACAAGAC
CCAACCTCTATGGCACAACTACTTCCTATGTGGATTTAAGGGAATTCAGGAACACTTTGGTCTT
ACTCAGCTGCCTGGAATGAATTGCCTGGTGGATGGAAATATACCCCCGAGTTCAGGCCTCTCCA
GCTCCAGTGCTCTGGTTTGCTGCGCTGGGTTAGTGACTCTCACAGTGCTGGGAATGAGACTATC
CAAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTGAGCGTTACATAGGCACCGAAGGCGGAGGC
ATGGACCAGTCCATATCATTTCTTGCAGAAGAAGGAACTGCCAAGTTAATAGAATTTAGTCCTC
TGAGAGCGACTGATGTGAAGCTCCCCAGTGGAGCAGTCTTCGTGATTGCCAACAGCTGTGTGGA
AATGAACAAGGCAGCCACTTCACATTTCAACGTCAGGGTGATGGAGTGTCGGCTGGCGGCAAAG
GTCCTTGCTAAACACAAAGGCTTGCAATGGGATAAAGTCCTGAGGCTAGAGGAAGTACAAAGCG
AACTAGGAATTAGTCTGGAAGAGATGCTATTGGTCACAGAGGATGCCCTTCATGCAGAACCCTA
CTCAAGGGAGGAGATCTGTAAGTGCCTGGGAATTAGCCTGGAGGAACTCCGCACCCAAATCCTG
AGTCCAAATACTCAAGGCGAACTCACCTTCAAGCTCTACCAGCGGGCCAAGCATGTGTACAGTG
AGGCTGCACGTGTGCTGCAGTTCAAGCAGGTGTGCGAAGCAGCACCAGACAACGCCGTCCAGCT
GCTGGGCGAGCTGATGAACCAGAGCCACAGAAGCTGCCGGGACATGTATGAGTGCAGCTGCCCG
GAATTGGATCAGCTAGTGGACATCTGCCGGAAGTTTGGGGCCAAAGGCTCACGACTTACTGGAG
CCGGATGGGGAGGCTGCACTGTGTCCCTCGTGCCTGCTGACACGCTGTCCAGCTTCCTCGCAAG
CGTGCATGAGGCTTACTACCAGGGGAACATGTCCCGCCTGGCTCGGGAGAAGCATAGCTTGTTT
GCTACCAAGCCTGGAGGTGGGGCCTTGGTTTTCCTTGAGGCCTAAACAATGTCAAACATCTCAG
AGAAACTATTTCAGGCATTCTGGAGCTGGCAGGACTTCCTGTGCCACAGTAAATCAGCCCCCTT
TCTATTTTGTGTTGTGAAGTATGATTGCTATTATCAAGGTGCATTTCCAAAGAAATGGAAAACG
AGGCTTCGTGATGACTTCTTTTCCTTCTTCCATGTATTTTTATGAATCAGAGCCAAGGATATGC
TTACATCTTTGAAGTATGATTAAGATTTATTGATGTGAAGATTTTAAAGATGAACAGCAAAATG
TACTTTTAGTTGTACACTCTCCTCCAATTAAATTGATAGAGCTGAAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_006234906 ⟹ XP_006234968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,941 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,117,535 - 113,233,304 (+)	NCBI
Rnor_6.0	3	118,144,543 - 118,268,838 (+)	NCBI
Rnor_5.0	3	124,661,798 - 124,793,303 (+)	NCBI

Sequence:

show sequence

AAGGGGGCCTCTTCTGCGGACCTGCAGGATTTCCGCTGAGATCCCGGAAGAAAGCTATTCCTGC
CACTTTAATCTCGTGATCCTTAGCTGTGCTGCACTTCTGGAAACCGCATAGGGATCTAGCAAAA
TATGGCTGCGGAGGACCCCGCCACGCGACGAGTCCAAGTGGCAGAACACCCCAGGTGAGCACAT
AGATTACTGTGGGTACTCTGTTCTCCCCATGGCTGTGGAGCAGGACATGCTAATAGCTGTGGGA
CCTGTGAAAACCCAGACTCTCCAACTGGCCAATACAGACCCCTTGTATCCAGACTTCAGTACTA
CAGCTAATAACATCTGTATCGACAAGACCCAACCTCTATGGCACAACTACTTCCTATGTGGATT
TAAGGGAATTCAGGAACACTTTGGTCTTACTCAGCTGCCTGGAATGAATTGCCTGGTGGATGGA
AATATACCCCCGAGTTCAGGCCTCTCCAGCTCCAGTGCTCTGGTTTGCTGCGCTGGGTTAGTGA
CTCTCACAGTGCTGGGAATGAGACTATCCAAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTGA
GCGTTACATAGGCACCGAAGGCGGAGGCATGGACCAGTCCATATCATTTCTTGCAGAAGAAGGA
ACTGCCAAGTTAATAGAATTTAGTCCTCTGAGAGCGACTGATGTGAAGCTCCCCAGTGGAGCAG
TCTTCGTGATTGCCAACAGCTGTGTGGAAATGAACAAGGCAGCCACTTCACATTTCAACGTCAG
GGTGATGGAGTGTCGGCTGGCGGCAAAGGTCCTTGCTAAACACAAAGGCTTGCAATGGGATAAA
GTCCTGAGGCTAGAGGAAGTACAAAGCGAACTAGGAATTAGTCTGGAAGAGATGCTATTGGTCA
CAGAGGATGCCCTTCATGCAGAACCCTACTCAAGGGAGGAGATCTGTAAGTGCCTGGGAATTAG
CCTGGAGGAACTCCGCACCCAAATCCTGAGTCCAAATACTCAAGGCGAACTCACCTTCAAGCTC
TACCAGCGGGCCAAGCATGTGTACAGTGAGGCTGCACGTGTGCTGCAGTTCAAGCAGGTGTGCG
AAGCAGCACCAGACAACGCCGTCCAGCTGCTGGGCGAGCTGATGAACCAGAGCCACAGAAGCTG
CCGGGACATGTATGAGTGCAGCTGCCCGGAATTGGATCAGCTAGTGGACATCTGCCGGAAGTTT
GGGGCCAAAGGCTCACGACTTACTGGAGCCGGATGGGGAGGCTGCACTGTGTCCCTCGTGCCTG
CTGACACGCTGTCCAGCTTCCTCGCAAGCGTGCATGAGGCTTACTACCAGGGGAACATGTCCCG
CCTGGCTCGGGAGAAGCATAGCTTGTTTGCTACCAAGCCTGGAGGTGGGGCCTTGGTTTTCCTT
GAGGCCTAAACAATGTCAAACATCTCAGAGAAACTATTTCAGGCATTCTGGAGCTGGCAGGACT
TCCTGTGCCACAGTAAATCAGCCCCCTTTCTATTTTGTGTTGTGAAGTATGATTGCTATTATCA
AGGTGCATTTCCAAAGAAATGGAAAACGAGGCTTCGTGATGACTTCTTTTCCTTCTTCCATGTA
TTTTTATGAATCAGAGCCAAGGATATGCTTACATCTTTGAAGTATGATTAAGATTTATTGATGT
GAAGATTTTAAAGATGAACAGCAAAATGTACTTTTAGTTGTACACTCTCCTCCAATTAAATTGA
TAGAGCTGAA

hide sequence

RefSeq Acc Id:

XM_017591576 ⟹ XP_017447065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,563,599 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,110,057 - 113,233,304 (+)	NCBI
Rnor_6.0	3	118,137,097 - 118,268,838 (+)	NCBI

Sequence:

show sequence

AGCTCATTCCGGAACCAATGCGCTCGACCCTGAGACGATTTACTACGGCGCCCAAAGGGAGCGC
ACAGTCGGCTCTTCCTGCGCGACAGTTGGTGTCTTAGCAACTAAGCGTAGCAACTGGGAAATCG
GGCGCTGCGGGTCCTTCCTATCTGAGGGGCTTCGGAAACCTTCTAGCAGTATCCAGCGTCCTAG
GTGAGGGAACTGTCTCCTTCCTTGCCTGGGACTCTGGAACCGTCTCTTTCTAATGAAACATGCC
CGACCTATATGACAGGTGAGCACATAGATTACTGTGGGTACTCTGTTCTCCCCATGGCTGTGGA
GCAGGACATGCTAATAGCTGTGGGACCTGTGAAAACCCAGACTCTCCAACTGGCCAATACAGAC
CCCTTGTATCCAGACTTCAGTACTACAGCTAATAACATCTGTATCGACAAGACCCAACCTCTAT
GGCACAACTACTTCCTATGTGGATTTAAGGGAATTCAGGAACACTTTGGTCTTACTCAGCTGCC
TGGAATGAATTGCCTGGTGGATGGAAATATACCCCCGAGTTCAGGCCTCTCCAGCTCCAGTGCT
CTGGTTTGCTGCGCTGGGTTAGTGACTCTCACAGTGCTGGGAATGAGACTATCCAAGGTGGAAC
TTGCAGAAATCTGTGCCAAGAGTGAGCGTTACATAGGCACCGAAGGCGGAGGCATGGACCAGTC
CATATCATTTCTTGCAGAAGAAGGAACTGCCAAGTTAATAGAATTTAGTCCTCTGAGAGCGACT
GATGTGAAGCTCCCCAGTGGAGCAGTCTTCGTGATTGCCAACAGCTGTGTGGAAATGAACAAGG
CAGCCACTTCACATTTCAACGTCAGGGTGATGGAGTGTCGGCTGGCGGCAAAGGTCCTTGCTAA
ACACAAAGGCTTGCAATGGGATAAAGTCCTGAGGCTAGAGGAAGTACAAAGCGAACTAGGAATT
AGTCTGGAAGAGATGCTATTGGTCACAGAGGATGCCCTTCATGCAGAACCCTACTCAAGGGAGG
AGATCTGTAAGTGCCTGGGAATTAGCCTGGAGGAACTCCGCACCCAAATCCTGAGTCCAAATAC
TCAAGGCGAACTCACCTTCAAGCTCTACCAGCGGGCCAAGCATGTGTACAGTGAGGCTGCACGT
GTGCTGCAGTTCAAGCAGGTGTGCGAAGCAGCACCAGACAACGCCGTCCAGCTGCTGGGCGAGC
TGATGAACCAGAGCCACAGAAGCTGCCGGGACATGTATGAGTGCAGCTGCCCGGAATTGGATCA
GCTAGTGGACATCTGCCGGAAGTTTGGGGCCAAAGGCTCACGACTTACTGGAGCCGGATGGGGA
GGCTGCACTGTGTCCCTCGTGCCTGCTGACACGCTGTCCAGCTTCCTCGCAAGCGTGCATGAGG
CTTACTACCAGGGGAACATGTCCCGCCTGGCTCGGGAGAAGCATAGCTTGTTTGCTACCAAGCC
TGGAGGTGGGGCCTTGGTTTTCCTTGAGGCCTAAACAATGTCAAACATCTCAGAGAAACTATTT
CAGGCATTCTGGAGCTGGCAGGACTTCCTGTGCCACAGTAAATCAGCCCCCTTTCTATTTTGTG
TTGTGAAGTATGATTGCTATTATCAAGGTGCATTTCCAAAGAAATGGAAAACGAGGCTTCGTGA
TGACTTCTTTTCCTTCTTCCATGTATTTTTATGAATCAGAGCCAAGGATATGCTTACATCTTTG
AAGTATGATTAAGATTTATTGATGTGAAGATTTTAAAGATGAACAGCAAAATGTACTTTTAGTT
GTACACTCTCCTCCAATTAAATTGATAGAGCTGAA

hide sequence

RefSeq Acc Id:

XM_039104556 ⟹ XP_038960484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,933 - 133,696,423 (+)	NCBI
mRatBN7.2	3	113,117,518 - 113,243,014 (+)	NCBI

RefSeq Acc Id:

XM_039104557 ⟹ XP_038960485

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,563,597 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,110,127 - 113,233,304 (+)	NCBI

RefSeq Acc Id:

XM_039104558 ⟹ XP_038960486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,911 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,117,521 - 113,233,304 (+)	NCBI

RefSeq Acc Id:

XM_039104560 ⟹ XP_038960488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,563,524 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,110,069 - 113,233,304 (+)	NCBI

RefSeq Acc Id:

XM_039104561 ⟹ XP_038960489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,636,520 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,183,116 - 113,233,304 (+)	NCBI

RefSeq Acc Id:

XM_039104562 ⟹ XP_038960490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,627,525 - 133,686,704 (+)	NCBI
mRatBN7.2	3	113,174,083 - 113,233,304 (+)	NCBI

RefSeq Acc Id:

XM_063283322 ⟹ XP_063139392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,576,857 - 133,686,704 (+)	NCBI

RefSeq Acc Id:

XM_063283323 ⟹ XP_063139393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,563,597 - 133,696,423 (+)	NCBI

RefSeq Acc Id:

XM_063283324 ⟹ XP_063139394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,563,533 - 133,696,423 (+)	NCBI

RefSeq Acc Id:

XR_005501813

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,935 - 133,686,401 (+)	NCBI
mRatBN7.2	3	113,117,519 - 113,232,912 (+)	NCBI

RefSeq Acc Id:

XR_005501815

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,931 - 133,696,049 (+)	NCBI
mRatBN7.2	3	113,117,516 - 113,242,648 (+)	NCBI

RefSeq Acc Id:

XR_005501816

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	133,570,931 - 133,683,771 (+)	NCBI
mRatBN7.2	3	113,117,516 - 113,230,371 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013941	(Get FASTA)	NCBI Sequence Viewer
	NP_001417017	(Get FASTA)	NCBI Sequence Viewer
	NP_001417018	(Get FASTA)	NCBI Sequence Viewer
	NP_001417019	(Get FASTA)	NCBI Sequence Viewer
	NP_001417020	(Get FASTA)	NCBI Sequence Viewer
	NP_001417021	(Get FASTA)	NCBI Sequence Viewer
	NP_001417022	(Get FASTA)	NCBI Sequence Viewer
	XP_006234968	(Get FASTA)	NCBI Sequence Viewer
	XP_017447065	(Get FASTA)	NCBI Sequence Viewer
	XP_038960484	(Get FASTA)	NCBI Sequence Viewer
	XP_038960485	(Get FASTA)	NCBI Sequence Viewer
	XP_038960486	(Get FASTA)	NCBI Sequence Viewer
	XP_038960488	(Get FASTA)	NCBI Sequence Viewer
	XP_038960489	(Get FASTA)	NCBI Sequence Viewer
	XP_038960490	(Get FASTA)	NCBI Sequence Viewer
	XP_063139392	(Get FASTA)	NCBI Sequence Viewer
	XP_063139393	(Get FASTA)	NCBI Sequence Viewer
	XP_063139394	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83716	(Get FASTA)	NCBI Sequence Viewer
	EDL80080	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012447
	ENSRNOP00000012447.5
	ENSRNOP00000068802
	ENSRNOP00000069500
	ENSRNOP00000108122
	ENSRNOP00000109188
GenBank Protein	Q5XIG6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013941 ⟸ NM_001013919

- UniProtKB:

Q5XIG6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAAEDPATRRVQVAEHPRLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVE
QDMLIAVGPVKTQTLQLANTDPLYPDFSTTANNICIDKTQPLWHNYFLCGFKGIQEHFGLTQLP
GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGMRLSKVELAEICAKSERYIGTEGGGMDQS
ISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNVRVMECRLAAKVLAK
HKGLQWDKVLRLEEVQSELGISLEEMLLVTEDALHAEPYSREEICKCLGISLEELRTQILSPNT
QGELTFKLYQRAKHVYSEAARVLQFKQVCEAAPDNAVQLLGELMNQSHRSCRDMYECSCPELDQ
LVDICRKFGAKGSRLTGAGWGGCTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSLFATKP
GGGALVFLEA

hide sequence

RefSeq Acc Id:

XP_006234968 ⟸ XM_006234906

- Peptide Label:

isoform X8

- Sequence:

show sequence

MAVEQDMLIAVGPVKTQTLQLANTDPLYPDFSTTANNICIDKTQPLWHNYFLCGFKGIQEHFGL
TQLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGMRLSKVELAEICAKSERYIGTEGGG
MDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNVRVMECRLAAK
VLAKHKGLQWDKVLRLEEVQSELGISLEEMLLVTEDALHAEPYSREEICKCLGISLEELRTQIL
SPNTQGELTFKLYQRAKHVYSEAARVLQFKQVCEAAPDNAVQLLGELMNQSHRSCRDMYECSCP
ELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSLF
ATKPGGGALVFLEA

hide sequence

RefSeq Acc Id:

XP_017447065 ⟸ XM_017591576

- Peptide Label:

isoform X7

- Sequence:

show sequence

MTGEHIDYCGYSVLPMAVEQDMLIAVGPVKTQTLQLANTDPLYPDFSTTANNICIDKTQPLWHN
YFLCGFKGIQEHFGLTQLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGMRLSKVELAE
ICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAAT
SHFNVRVMECRLAAKVLAKHKGLQWDKVLRLEEVQSELGISLEEMLLVTEDALHAEPYSREEIC
KCLGISLEELRTQILSPNTQGELTFKLYQRAKHVYSEAARVLQFKQVCEAAPDNAVQLLGELMN
QSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADTLSSFLASVHEAYY
QGNMSRLAREKHSLFATKPGGGALVFLEA

hide sequence

Ensembl Acc Id:

ENSRNOP00000069500 ⟸ ENSRNOT00000079023

Ensembl Acc Id:

ENSRNOP00000012447 ⟸ ENSRNOT00000012447

Ensembl Acc Id:

ENSRNOP00000068802 ⟸ ENSRNOT00000083356

RefSeq Acc Id:	XP_038960488 ⟸ XM_039104560
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038960485 ⟸ XM_039104557
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038960484 ⟸ XM_039104556
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038960486 ⟸ XM_039104558
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038960490 ⟸ XM_039104562
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038960489 ⟸ XM_039104561
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063139394 ⟸ XM_063283324
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063139393 ⟸ XM_063283323
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063139392 ⟸ XM_063283322
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000107373 ⟸ ENSRNOT00000155477

Ensembl Acc Id:

ENSRNOP00000109188 ⟸ ENSRNOT00000161790

Ensembl Acc Id:

ENSRNOP00000107937 ⟸ ENSRNOT00000127430

Ensembl Acc Id:

ENSRNOP00000108122 ⟸ ENSRNOT00000135446

Protein Domains

Galactokinase N-terminal GHMP kinase C-terminal GHMP kinase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIG6-F1-model_v2	AlphaFold	Q5XIG6	1-458	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692384

Promoter ID:

EPDNEW_R2909

Type:

initiation region

Name:

Galk2_1

Description:

galactokinase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	118,144,608 - 118,144,668	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308691	AgrOrtholog
BioCyc Gene	G2FUF-48030	BioCyc
Ensembl Genes	ENSRNOG00000009289	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000012447	ENTREZGENE
	ENSRNOT00000012447.7	UniProtKB/Swiss-Prot
	ENSRNOT00000079023	ENTREZGENE
	ENSRNOT00000083356	ENTREZGENE
	ENSRNOT00000135446	ENTREZGENE
	ENSRNOT00000161790	ENTREZGENE
Gene3D-CATH	1.20.1440.340	UniProtKB/Swiss-Prot
	3.30.230.10	UniProtKB/Swiss-Prot
	3.30.70.3170	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7190694	IMAGE-MGC_LOAD
InterPro	Galactokinase	UniProtKB/Swiss-Prot
	Galactokinase_CS	UniProtKB/Swiss-Prot
	GalKase_gal-bd	UniProtKB/Swiss-Prot
	GHMP_kinase_C_dom	UniProtKB/Swiss-Prot
	GHMP_kinase_C_sf	UniProtKB/Swiss-Prot
	GHMP_kinase_N_dom	UniProtKB/Swiss-Prot
	GHMP_knse_ATP-bd_CS	UniProtKB/Swiss-Prot
	Mevalonate/galactokinase	UniProtKB/Swiss-Prot
	Ribosomal_S5_D2-typ_fold	UniProtKB/Swiss-Prot
	Ribosomal_S5_D2-typ_fold_subgr	UniProtKB/Swiss-Prot
KEGG Report	rno:296117	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94607	IMAGE-MGC_LOAD
NCBI Gene	Galk2	ENTREZGENE
PANTHER	GALACTOKINASE-RELATED	UniProtKB/Swiss-Prot
	MEVALONATE KINASE/GALACTOKINASE	UniProtKB/Swiss-Prot
Pfam	GalKase_gal_bdg	UniProtKB/Swiss-Prot
	GHMP_kinases_C	UniProtKB/Swiss-Prot
	GHMP_kinases_N	UniProtKB/Swiss-Prot
PhenoGen	Galk2	PhenoGen
PIRSF	Galactokinase	UniProtKB/Swiss-Prot
PRINTS	GALCTOKINASE	UniProtKB/Swiss-Prot
	MEVGALKINASE	UniProtKB/Swiss-Prot
PROSITE	GALACTOKINASE	UniProtKB/Swiss-Prot
	GHMP_KINASES_ATP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009289	RatGTEx
Superfamily-SCOP	SSF54211	UniProtKB/Swiss-Prot
	SSF55060	UniProtKB/Swiss-Prot
UniProt	A0A0G2JTQ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UPK8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LV22_RAT	UniProtKB/TrEMBL
	A0ABK0LZC6_RAT	UniProtKB/TrEMBL
	A0ABK0M1S4_RAT	UniProtKB/TrEMBL
	A0ABK0M237_RAT	UniProtKB/TrEMBL
	A6HPX9	ENTREZGENE, UniProtKB/TrEMBL
	GALK2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2007-03-14	Galk2	galactokinase 2	Galk2_predicted	galactokinase 2 (predicted)	Symbol and Name updated	1299863	APPROVED
2007-02-12	Galk2_predicted	galactokinase 2 (predicted)	LOC296117	similar to N-acetylgalactosamine kinase (GalNAc kinase) (Galactokinase 2)	Data merged from RGD:1560490	737654	APPROVED
2006-02-09	LOC296117	similar to N-acetylgalactosamine kinase (GalNAc kinase) (Galactokinase 2)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Galk2_predicted	galactokinase 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)