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Gene: Dscaml1 (DS cell adhesion molecule-like 1) Rattus norvegicus

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Symbol:

Dscaml1

Name:

DS cell adhesion molecule-like 1

RGD ID:

1304887

Description:

Predicted to enable cell-cell adhesion mediator activity and protein homodimerization activity. Predicted to be involved in several processes, including embryonic skeletal system morphogenesis; homophilic cell adhesion via plasma membrane adhesion molecules; and nervous system development. Predicted to be located in cell surface. Predicted to be active in axon and plasma membrane. Orthologous to human DSCAML1 (DS cell adhesion molecule like 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cell adhesion molecule DSCAML1; Down syndrome cell adhesion molecule-like 1; Down syndrome cell adhesion molecule-like protein 1; LOC315615

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DSCAML1 (DS cell adhesion molecule like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Dscaml1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dscaml1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DSCAML1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DSCAML1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dscaml1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DSCAML1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DSCAML1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dscaml1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dscaml1 (DS cell adhesion molecule like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TUBGCP2 (tubulin gamma complex component 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	DSCAML1 (DS cell adhesion molecule like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dscaml1 (DS cell adhesion molecule like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dscaml1 (DS cell adhesion molecule like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Dscam2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Dscam3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Dscam3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Dscam4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Dscam1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dscaml1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dscaml1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C27B7.7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	54,637,054 - 54,954,042 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	54,636,932 - 54,954,040 (+)	Ensembl				GRCr8
mRatBN7.2	8	45,740,298 - 46,057,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	45,740,298 - 46,057,320 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	51,241,621 - 51,558,558 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	49,520,390 - 49,837,319 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	47,384,518 - 47,701,590 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	49,733,835 - 50,056,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	49,737,798 - 50,055,560 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	48,363,393 - 48,680,159 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	48,406,373 - 48,723,775 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	45,323,185 - 45,640,085 (+)	NCBI		Celera
RGSC_v3.1	8	48,415,176 - 48,732,542 (+)	NCBI
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cannabidiol (ISO)

CGP 52608 (ISO)

D-glucose (ISO)

doxorubicin (EXP)

ethanol (ISO)

folic acid (ISO)

fructose (ISO)

fulvestrant (ISO)

glucose (ISO)

hexamethylene diisocyanate (ISO)

manganese atom (EXP)

manganese(0) (EXP)

manganese(II) chloride (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

morphine (ISO)

N,N-diethyl-m-toluamide (EXP)

nitrofen (EXP)

paracetamol (ISO)

PCB138 (ISO)

pentanal (ISO)

permethrin (EXP)

potassium dichromate (ISO)

propanal (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Theaflavin 3,3'-digallate (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

brain development (IEA,ISO)

cell adhesion (IEA)

central nervous system development (IBA)

dendrite self-avoidance (IBA,ISO)

embryonic skeletal system morphogenesis (IEA,ISO)

homophilic cell-cell adhesion (IBA,IEA,ISO)

negative regulation of cell adhesion (ISO)

nervous system development (IEA)

Cellular Component

axon (IBA)

cell surface (IEA,ISO)

plasma membrane (IBA,IEA)

synapse (IEA)

Molecular Function

cell-cell adhesion mediator activity (IBA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11453658	PMID:12051741	PMID:19945391	PMID:22664934	PMID:24084194	PMID:33256836

Genomics

Comparative Map Data

Dscaml1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	54,637,054 - 54,954,042 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	54,636,932 - 54,954,040 (+)	Ensembl				GRCr8
mRatBN7.2	8	45,740,298 - 46,057,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	45,740,298 - 46,057,320 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	51,241,621 - 51,558,558 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	49,520,390 - 49,837,319 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	47,384,518 - 47,701,590 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	49,733,835 - 50,056,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	49,737,798 - 50,055,560 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	48,363,393 - 48,680,159 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	48,406,373 - 48,723,775 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	45,323,185 - 45,640,085 (+)	NCBI		Celera
RGSC_v3.1	8	48,415,176 - 48,732,542 (+)	NCBI
Cytogenetic Map	8	q22	NCBI

DSCAML1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	117,427,772 - 117,817,514 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	117,427,772 - 117,817,525 (-)	Ensembl			hg38	GRCh38
GRCh37	11	117,298,488 - 117,688,229 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	116,803,699 - 117,173,186 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	116,803,698 - 117,173,186	NCBI
Celera	11	114,456,148 - 114,825,824 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	113,232,070 - 113,601,503 (-)	NCBI		HuRef
CHM1_1	11	117,184,136 - 117,553,548 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	117,444,420 - 117,833,926 (-)	NCBI		T2T-CHM13v2.0

Dscaml1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	45,338,735 - 45,665,011 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	45,337,926 - 45,665,010 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	45,427,433 - 45,753,713 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	45,426,628 - 45,753,712 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	45,238,376 - 45,561,796 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	45,177,638 - 45,504,708 (+)	NCBI		MGSCv36	mm8
Celera	9	42,711,034 - 43,036,189 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Dscaml1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	18,708,993 - 19,022,523 (-)	Ensembl
ChiLan1.0	NW_004955412	18,708,444 - 19,022,538 (-)	NCBI	ChiLan1.0	ChiLan1.0

DSCAML1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	118,129,935 - 118,499,279 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	119,234,895 - 119,604,479 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	112,263,509 - 112,632,332 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	116,196,121 - 116,564,715 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	116,196,677 - 116,302,262 (-)	Ensembl			panPan2	panpan1.1

DSCAML1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	15,839,504 - 16,187,465 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	15,826,726 - 16,186,880 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	15,892,647 - 16,236,733 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	15,784,153 - 16,128,741 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	15,784,119 - 16,128,732 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	15,922,210 - 16,266,654 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	15,825,496 - 16,169,644 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	15,867,121 - 16,211,866 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dscaml1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	99,704,544 - 100,018,127 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	2,620,469 - 2,939,578 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	2,619,910 - 2,939,578 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DSCAML1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	44,785,701 - 45,147,140 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	44,785,142 - 45,153,256 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	49,858,136 - 49,975,441 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DSCAML1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	108,801,895 - 109,167,011 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	108,802,452 - 108,906,272 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	16,884,696 - 17,253,166 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dscaml1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	12,854,420 - 13,183,132 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624784	12,853,870 - 13,183,224 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dscaml1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	40,162,269 - 40,282,939 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dscaml1
2066 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	37
Count of miRNA genes:	34
Interacting mature miRNAs:	37
Transcripts:	ENSRNOT00000022476
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	51589699	58991895	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	37760859	58991895	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	49610204	68373388	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	67378345	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	50763951	67219641	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	34125902	55607752	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat

Markers in Region

D8Mgh12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,008,836 - 46,008,974 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,007,641 - 50,007,776	NCBI	Rnor6.0
Rnor_5.0	8	48,631,685 - 48,631,820	UniSTS	Rnor5.0
RGSC_v3.4	8	48,675,288 - 48,675,424	RGD	RGSC3.4
RGSC_v3.4	8	48,675,289 - 48,675,424	UniSTS	RGSC3.4
Celera	8	45,591,619 - 45,591,754	UniSTS
RGSC_v3.1	8	48,684,054 - 48,684,190	RGD
RH 3.4 Map	8	467.0	UniSTS
RH 3.4 Map	8	467.0	RGD
RH 2.0 Map	8	370.0	RGD
Cytogenetic Map	8	q22	UniSTS

D8Rat197

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	54,638,845 - 54,638,979 (+)	Marker Load Pipeline
mRatBN7.2	8	45,742,089 - 45,742,223 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,739,550 - 49,739,683	NCBI	Rnor6.0
Rnor_5.0	8	48,365,185 - 48,365,318	UniSTS	Rnor5.0
RGSC_v3.4	8	48,408,164 - 48,408,298	RGD	RGSC3.4
RGSC_v3.4	8	48,408,165 - 48,408,298	UniSTS	RGSC3.4
Celera	8	45,324,977 - 45,325,110	UniSTS
RGSC_v3.1	8	48,416,930 - 48,417,064	RGD
FHH x ACI Map	8	40.27	UniSTS
FHH x ACI Map	8	40.27	RGD
Cytogenetic Map	8	q22	UniSTS

D8Got66

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	54,732,800 - 54,733,024 (+)	Marker Load Pipeline
mRatBN7.2	8	45,836,054 - 45,836,280 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,833,363 - 49,833,586	NCBI	Rnor6.0
Rnor_5.0	8	48,458,915 - 48,459,138	UniSTS	Rnor5.0
RGSC_v3.4	8	48,502,035 - 48,502,259	RGD	RGSC3.4
RGSC_v3.4	8	48,502,036 - 48,502,259	UniSTS	RGSC3.4
Celera	8	45,418,726 - 45,418,949	UniSTS
RGSC_v3.1	8	48,510,802 - 48,511,025	RGD
RH 3.4 Map	8	462.2	RGD
RH 3.4 Map	8	462.2	UniSTS
RH 2.0 Map	8	369.0	RGD
Cytogenetic Map	8	q22	UniSTS

D8Uwm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	45,874,093 - 45,874,250 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,871,586 - 49,871,742	NCBI	Rnor6.0
Rnor_5.0	8	48,496,748 - 48,496,904	UniSTS	Rnor5.0
RGSC_v3.4	8	48,540,087 - 48,540,243	UniSTS	RGSC3.4
Celera	8	45,456,672 - 45,456,828	UniSTS
RGSC_v3.1	8	48,548,852 - 48,549,009	RGD
Cytogenetic Map	8	q22	UniSTS

RH138369

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	45,811,834 - 45,811,985 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,809,143 - 49,809,293	NCBI	Rnor6.0
Rnor_5.0	8	48,434,526 - 48,434,676	UniSTS	Rnor5.0
RGSC_v3.4	8	48,477,816 - 48,477,966	UniSTS	RGSC3.4
Celera	8	45,394,506 - 45,394,656	UniSTS
RH 3.4 Map	8	464.2	UniSTS
Cytogenetic Map	8	q22	UniSTS

BF390668

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,015,994 - 46,016,151 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,014,797 - 50,014,953	NCBI	Rnor6.0
Rnor_5.0	8	48,638,841 - 48,638,997	UniSTS	Rnor5.0
RGSC_v3.4	8	48,682,445 - 48,682,601	UniSTS	RGSC3.4
Celera	8	45,598,775 - 45,598,931	UniSTS
RH 3.4 Map	8	467.1	UniSTS
Cytogenetic Map	8	q22	UniSTS

BB239540

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,057,119 - 46,057,202 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,055,913 - 50,055,995	NCBI	Rnor6.0
Rnor_5.0	8	48,679,959 - 48,680,041	UniSTS	Rnor5.0
RGSC_v3.4	8	48,723,575 - 48,723,657	UniSTS	RGSC3.4
Celera	8	45,639,885 - 45,639,967	UniSTS
Cytogenetic Map	8	q22	UniSTS

UNH191

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	45,899,109 - 45,899,937 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,896,598 - 49,897,425	NCBI	Rnor6.0
Rnor_5.0	8	48,521,762 - 48,522,685	UniSTS	Rnor5.0
RGSC_v3.4	8	48,565,729 - 48,566,556	UniSTS	RGSC3.4
Celera	8	45,481,685 - 45,482,512	UniSTS
Cytogenetic Map	8	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	2	24	149	35	41	13	31	13	6	119	71	6	135	20	74	28	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022476 ⟹ ENSRNOP00000022476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	54,637,048 - 54,954,040 (+)	Ensembl
mRatBN7.2 Ensembl	8	45,740,298 - 46,057,320 (+)	Ensembl
Rnor_6.0 Ensembl	8	49,737,798 - 50,055,560 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102760 ⟹ ENSRNOP00000087336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	54,636,932 - 54,954,040 (+)	Ensembl
mRatBN7.2 Ensembl	8	45,740,298 - 46,057,320 (+)	Ensembl

RefSeq Acc Id:

NM_001108141 ⟹ NP_001101611

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	54,637,054 - 54,954,040 (+)	NCBI
mRatBN7.2	8	45,740,298 - 46,057,320 (+)	NCBI
Rnor_6.0	8	49,737,758 - 50,056,113 (+)	NCBI
Rnor_5.0	8	48,363,393 - 48,680,159 (+)	NCBI
RGSC_v3.4	8	48,406,373 - 48,723,775 (+)	RGD
Celera	8	45,323,185 - 45,640,085 (+)	RGD

Sequence:

show sequence

GGGGGGGCGGGGAGAGCGGCCGCCTAGCCCAGCCCCGCGGATGACAGGAGCCGGGGAGCCGAGG
AGGGAGGAGCCGCCGCCGTGCGCTGGGCTGAGGAGCAGAGAGAGCGGGGCGCCGAGTGCGGGCG
GCTGGGAGCGCGCTGAGCGGGGGAGAGGCGCTGCCGCACGGCCGGCCACAGGACCACCTCCCCG
GAGAAAAGGGCCTCTTTATGGCATGTGGCTGGTAACTTTCCTCCTGCTCCTGGACTCTTTACAC
AAAGCCCGCCCTGAAGATGTTGGCACCAGCCTCTACTTTGTAAATGACTCCCTGCAGCACGTAA
CCTTCTCCAGCTCTGTGGGTGTGGTGGTGCCCTGCCCGGCCGCTGGATCCCCCAGTGCGGCTCT
TCGATGGTACCTGGCCACGGGGGACGACATCTACGATGTGCCACACATCCGGCACGTGCATGCC
AACGGGACTCTGCAGCTCTACCCTTTCTCCCCCTCCGCCTTCAATAGCTTTATCCACGACAATG
ACTATTTCTGCACCGCAGAGAACGCAGCCGGCAAGATCCGGAGCCCTAACATTCGCATCAAAGC
AGTTTTCAGGGAACCCTACACCGTCCGGGTGGAGGATCAAAGGTCAATGCGTGGCAACGTGGCT
GTCTTCAAGTGCCTCATCCCCTCTTCAGTGCAGGAATACGTTAGCGTCGTGTCTTGGGAGAAAG
ACACAGTCTCCATCACTCCAGAAAACAGGTTTTTCATCACATCACACGGTGGGCTGTACATCTC
GGACGTGCAGAAGGAAGATGCTCTCTCTACCTACCGCTGCATCACTCAGCACAAATACAGTGGG
GAGACTCGTCAGAGCAACGGGGCTCGGCTCTCTGTGACAGACCCTGCAGAGTCCATCCCCACCA
TCCTGGATGGCTTCCACTCCCAGGAAGTGTGGACCGGCCACGCAGTCGAGCTGCCCTGTGCTGC
CTCTGGCTACCCCATCCCTGCCATCCGCTGGCTCAAAGATGGCAGACCCCTCCCTGCTGACAGC
CGCTGGGCTAAGCGCATTACAGGGCTGACCATCAGTGATCTGCGCACTGAGGACAGCGGCACCT
ACATCTGTGAGGTCACCAACACCTTCGGGTCAGCAGAGGCCAACGGCGTCCTCACAGTCATTGA
CCCTCTTCATGTGACCCTGACACCAAAGAAGCTGAAGACGGGCATCGGGAGCACGGTTATCCTG
TCCTGCGCCCTCACCGGCTCCCCGGAGTTCACCATCCGCTGGTACCGCAACACAGAACTGGTGC
TGCCCGGTGAGGCCATCTCCATCCGCGGGCTTAGCAATGAAACTCTGCTTATCTCCTCGGCACA
GAAGAGCCACTCGGGGGCCTACCAGTGCTTCGCCACCCGAAAGGCCCAGACAGCGCAGGACTTT
GCCATCATCGTGCTGGAAGACGGCACGCCCCGCATCGTCTCATCCTTCAGCGAGAAGGTGGTCA
ACCCCGGGGAGCAGTTCTCATTGATGTGTGCCGCCAAGGGCGCCCCGCCCCCCACGGTCACCTG
GGCCCTGGACGACGAGCCTGTCGTGCGGGATGGAAGCCACCGCACCAACCAGTACACCATGTCC
GACGGCACCACCATCAGCCACATGAACGTCACGGGTCCCCAGATCCGGGATGGGGGCGTGTACC
GGTGCACAGCGCGGAACTCGGTGGGCAGTGCTGAATATCAGGCGCGAATAAACGTAAGAGGACC
CCCCAGCATCCGGGCAATGAGGAACATCACGGCAGTCGCCGGGCGGGACACACTCATCAACTGC
AGGGTCATCGGCTACCCCTACTACTCTATCAAGTGGTACAAGGATGCCCTGCTGCTACCAGATA
ACCACCGCCAGGTGGTGTTTGAGAACGGGACCCTCAAGCTGACGGACGTGCAGAAGGGCATGGA
TGAGGGAGAGTACCTGTGCAGTGTGCTCATCCAGCCGCAGCTTTCCATCAGCCAGAGTGTCCAT
GTGGCCGTCAAAGTGCCCCCTCTGATCCAGCCCTTTGAGTTCCCCCCTGCCTCCATCGGCCAGC
TGCTCTACATCCCCTGTGTGGTGTCCTCGGGGGACATGCCCATCCGCATCACCTGGAGAAAGGA
CGGACAGGTGATCATCTCAGGCTCAGGCGTGACCATCGAGAGCAAGGAATTCATGAGCTCCCTG
CAGATCTCCAGCGTCTCCCTCAAACACAATGGCAACTACACTTGCATTGCCAGCAACGCAGCGG
CCACCGTGAGCAGGGAGCGCCAGCTCATCGTGCGCGTGCCCCCTCGATTTGTGGTGCAGCCCAA
CAACCAGGATGGCATCTATGGCAAAGCTGGTGTGCTCAACTGCTCGGTAGATGGCTACCCGCCA
CCCAAGGTCATGTGGAAGCATGCCAAAGGGAGTGGGAACCCTCAGCAATATCACCCAGTGCCCC
TCACTGGCCGCATCCAGATCCTGCCCAACAGCTCCCTGCTGATACGCCACGTCCTGGAAGAGGA
CATCGGCTACTACCTCTGCCAGGCCAGCAACGGTGTGGGCACTGACATCAGCAAGGCCATGTTC
CTCACGGTGAAAATCCCAGCCATGATCACGTCGCACCCCAACACCACTATCGCCATCAAGGGCC
ACGCCAAGGAGCTGAACTGCACTGCGCGTGGCGAGCGGCCCATCATAATCCGCTGGGAGAAGGG
GGACACCGTCATTGATCCCGACCGTGTCATGCGGTATGCCATTGCTACCAAGGACAATGGCGAT
GAGGTGGTCTCCACGCTTAAGCTCAAGCCAGCCGACCGTGGGGACTCCGTGTTCTTCAGCTGCC
ATGCTATCAACTCATACGGAGAGGACCGGGGTTTGATCCAGCTCACTGTGCAAGAGCCCCCTGA
CCCCCCAGAGCTGGAGATCCGGGAGGTGAAGGCCCGGAGCATGAACCTGCGTTGGACTCAGAGA
TTTGATGGAAACAGTATCATCACTGGCTTTGATATCGAGTACAAGAACAAATCAGATTCATGGG
ATTTTAAGCAGTCCACCCGTAACATCTCCCCAACCATCAACCAGGCGAACATCGTAGATTTACA
CCCAGCATCGGTGTACAGCATCCGCATGTACTCCTTCAACAAGATTGGGCGCAGCGAGCCGAGC
AAGGAGCTTACTATCAGTACAGAGGAAGCCGCTCCTGATGGGCCTCCCATGGATGTCACCTTGC
AACCAGTGACTTCACAGAGCATCCAGGTGACCTGGAAGGCACCAAAGAAGGAGCTGCAAAATGG
AATCATCCGGGGATACCAGATTGGCTACAGGGAGAACAGCCCCGGTAGCAATGGGCAGTACAGC
ATTGTGGAAATGAAGGCGACGGGGGACAGCGAGGTCTACACGCTGGATAACCTCAAGAAGTTCG
CTCAGTACGGCGTGGTGGTCCAAGCCTTCAACCGGGCCGGCACGGGGCCCTCATCCAGTGAGAT
CAATGCCACCACCTTGGAGGATGTGCCCAGCCAGCCCCCAGAGAATGTCCGAGCTCTGTCCATC
ACTTCTGACGTGGCTGTCATCTCCTGGTCGGAACCCCCACGAAGCACCCTCAACGGGGTCCTCA
AAGGCTACCGGGTCATCTTCTGGTCACTCTACGTTGACGGAGAGTGGGGCGAGATGCAGAATGT
CACCACCACAAGAGAGCGAGTGGAGCTGCGGGGTATGGAGAAGTTCACCAACTACAGCGTCCAG
GTGCTCGCCTACACGCAGGCTGGGGATGGTGTGCGCAGCAGCGTGCTCTATATCCAGACCAAGG
AAGATGTTCCAGGCCCCCCTGCTGGCATCAAAGCTGTCCCTTCATCAGCTAGCAGTGTGGTCGT
GTCCTGGTTGCCCCCAACCAAGCCCAATGGGGTGATCCGAAAATACACCATCTTTTGTTCCAGC
CCTGGGTCCGGCCAGCCGGCTCCCAGCGAGTACGAGACCAGTCCTGAACAGCTCTTCTACAGGA
TCGCCCATCTGAACCGGGGCCAGCAGTACTTGCTATGGGTGGCTGCGGTCACCTCTGCAGGCCG
GGGGAACAGCAGCGAGAAGGTCACCATCGAGCCTGCTGGCAAGGCCCCAGCAAAGATCATCTCC
TTTGGAGGCACTGTAACGACACCCTGGTTGAAAGATGTCCGACTGCCTTGCAACTCCGTGGGAG
ACCCAGCCCCGGCTGTGAAGTGGACCAAGGACAGTGAAGACTCAGCCATCCCCGTGTCTTTGGA
TGGACACCGGCTCATCCACACAAACGGTACACTGCTGCTTCGCGCTGTGAAGGCTGAAGACTCC
GGCTATTACACCTGCACAGCAACCAACACCGGTGGCTTTGACACCATCATCGTCAACCTTCTGG
TACAAGTTCCCCCAGACCAGCCCCGCCTCACTGTCTCCAAAACCTCCGCCTCTTCCATCACCCT
GACCTGGATTCCAGGGGACAATGGGGGCAGCTCCATCAGAGGCTTCGTGCTACAGTACTCTGTG
GATAACAGCGAGGAGTGGAAGGATGTGTTCATCAGTTCCAGTGAGCGCTCCTTCAAGCTAGACA
GCCTCAAGTGTGGCACGTGGTACAAGGTGAAGCTGGCGGCCAAGAACAGTGTGGGCTCTGGGCG
CATCAGCGAGATCATCGAGGCCAAGACCCATGGGCGGGAACCTTCCTTCAGCAAAGACCAACAC
CTCTTCACCCACATCAACTCTACACATGCTCGGCTTAACCTGCAGGGCTGGAACAATGGGGGCT
GCCCCATCACAGCCATTGTCCTGGAGTACCGGCCCAAGGGGACCTGGGCCTGGCAGGGCGTCCG
AGCCAACAGTTCCACAGAGGTGTTTCTGACAGAACTTCGAGAGGCTACCTGGTATGAGCTCCGC
ATGAGGGCTTGCAACAGTGCCGGCTGTGGCAATGAGACCGCCCAGTTTGCCACCCTGGACTACG
ATGGCAGCACCATCCCCCCCATCAAGTCTGCTCAAGGAGAAGGAGATGATGTGAAGAAGTTGTT
CACCATCGGCTGTCCAGTCATCCTGGCCACCCTCGGGGTGGCGCTGCTCTTTGTTGTAAGAAAG
AAGAGGAAGGAGAAACGGCTGAAGAGGCTCCGAGATGCAAAGAGTTTGGCAGAAATGCTGATAA
GCAAGAACAACCGAAGCTTTGACACTCCTGTGAAAGGGCCACCCCAGGGTCCACGGCTCCACAT
TGACATCCCGAGGGTTCAGCTGCTCATTGAGGACAAGGAGGGCATCAAGCAGCTGGGAGATGAC
AAGGCCACCATTCCTGTAACCGATGCTGAGTTCAGTCAAGCTGTCAACCCACAGAGCTTCTGTA
CTGGTGTCTCTTTGCATCATCCTGCCCTTATCCAGAGCACGGGACCCCTCATCGACATGTCAGA
CATCCGGCCAGGAACCAATCCAGTATCCAGGAAGAACGTGAAATCAGCCCACAGCACCCGGAAC
CGGTACTCAAGCCAGTGGACCTTGACCAAGTGCCAGGCCTCCACCCCTGCCCGAACCCTCACCT
CCGACTGGCGCACTGTGGGTTCCCAGCATGGTGTCACTGTCACTGAGAGCGACAGCTACAGTGC
CAGTCTATCCCAAGACACAGACAAAGGGAGAAACAGCATGGTATCCACTGAGAGTGCTTCCTCC
ACCTATGAGGAGCTGGCCCGGGCCTATGAGCACGCCAAGCTGGAGGAGCAGCTGCAGCACGCCA
AGTTTGAAATCACAGAGTGCTTCATCTCGGACAGCTCCTCGGACCAGATGACCACGGGCACCAA
CGAGAACGCCGACAGCATGACATCTATGAGTACACCCTCAGAGCCTGGCATCTGCCGCTTCACT
GCCTCTCCACCCAAGCCGCAGGATGCTGACAGGGGCAAGAACGTGGCTGTGCCCATCCCTCACC
GAGCCAACAAGAGTGACTACTGTAACCTGCCACTGTATACCAAGTCAGAGGCCTTCTTCCGAAA
GGCAGATGGGCGGGAGCCCTGCCCTGTGGTCCCACCCCGAGAGGCCTCCATGAGGAACCTGACT
CGAGCCTACCATACCCAGGCCCGGCACCTCACTCTGGACCCTGCCAGCAAGCCCTTGGGCCTCC
CCCATCCAGGGGCCACCGCTGCCACCGCCACGGCCACCTTACCTCAGAGGACTCTGGCCATGCC
GGCACCCCCAGCTGGCACGGCACCCCCAGCACCTGGCCCTACTCCCAGTGAGCCCTCTGCTCCT
CCTAGTGCTGCCCCTCCGGCCCCCAGCACTGAACCTCCACGGGCCGGAGGCCCACACACCAAAA
TGGGGGGCTCCAGGGACTCACTACTCGAAATGAGCACCCCAGGGGTGGGGCGTTCTCAGAAACA
GGGGGCTGGAGCCTATTCCAAATCCTACACCCTGGTGTAGGACGGCTGACATCCGGAGAAGGGC
TCCACACTGGGACCTCTGCACCTCCAGCCCTCACACACCAACGTGGCTGAATTATTTATATTAA
GTTCACAGACAAAAAAAAAAAAAAAAAAAAAAGACGTCGTCAAAAAGAAATCCCCAGTCATGAA
CACTTGTACATAGAACTCTTTTGTACAAATGAAACTATTTTCTTCTTCTCCATGAAGCCAGGGC
ACAAAACAAGTCAAATCCTCCACCCCACGAAATATGCGTGGAGAGATATATACATATATAGGTA
GAGTGGGACACAGCGACAATCTATATATCTATATATTTCTCTCACCTTCTTTTGAGACAGAGGC
ACAAAGACAGCAATTTTTCTGCCCTCCTCACACCCCCCCTCCCAACTAGGTGATTTTGACAAAG
ACCAAAATCCCAGCTCAGAGACACTGCATGCGATTTTACTGTTCCAAGAAAACCGGGAGTTGCT
TCAATTTGCAGATGCTTATGTGCTAATACCTTTTTCTATGAAAAAAAGACCCAGCGCCGTGTGC
AATAAAGGTTATGTTTC

hide sequence

RefSeq Acc Id:

XM_039081433 ⟹ XP_038937361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	54,637,134 - 54,954,042 (+)	NCBI
mRatBN7.2	8	45,740,319 - 46,057,322 (+)	NCBI

RefSeq Acc Id:

XM_039081435 ⟹ XP_038937363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	54,875,469 - 54,954,042 (+)	NCBI
mRatBN7.2	8	45,978,735 - 46,057,322 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101611	(Get FASTA)	NCBI Sequence Viewer
	XP_038937361	(Get FASTA)	NCBI Sequence Viewer
	XP_038937363	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95372	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022476
	ENSRNOP00000022476.4
	ENSRNOP00000087336
	ENSRNOP00000087336.2

RefSeq Acc Id:

NP_001101611 ⟸ NM_001108141

- UniProtKB:

D3ZPL7 (UniProtKB/TrEMBL), A6J449 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTGAGEPRREEPPPCAGLRSRESGAPSAGGWERAERGRGAAARPATGPPPRRKGPLYGMWLVTF
LLLLDSLHKARPEDVGTSLYFVNDSLQHVTFSSSVGVVVPCPAAGSPSAALRWYLATGDDIYDV
PHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQ
RSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSITPENRFFITSHGGLYISDVQKEDALSTYRC
ITQHKYSGETRQSNGARLSVTDPAESIPTILDGFHSQEVWTGHAVELPCAASGYPIPAIRWLKD
GRPLPADSRWAKRITGLTISDLRTEDSGTYICEVTNTFGSAEANGVLTVIDPLHVTLTPKKLKT
GIGSTVILSCALTGSPEFTIRWYRNTELVLPGEAISIRGLSNETLLISSAQKSHSGAYQCFATR
KAQTAQDFAIIVLEDGTPRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPVVRDGSH
RTNQYTMSDGTTISHMNVTGPQIRDGGVYRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVA
GRDTLINCRVIGYPYYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYLCSVLIQPQ
LSISQSVHVAVKVPPLIQPFEFPPASIGQLLYIPCVVSSGDMPIRITWRKDGQVIISGSGVTIE
SKEFMSSLQISSVSLKHNGNYTCIASNAAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLN
CSVDGYPPPKVMWKHAKGSGNPQQYHPVPLTGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVG
TDISKAMFLTVKIPAMITSHPNTTIAIKGHAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYA
IATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPELEIREVKARS
MNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISPTINQANIVDLHPASVYSIRMYSFN
KIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGIIRGYQIGYRENS
PGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPP
ENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIFWSLYVDGEWGEMQNVTTTRERVELRGME
KFTNYSVQVLAYTQAGDGVRSSVLYIQTKEDVPGPPAGIKAVPSSASSVVVSWLPPTKPNGVIR
KYTIFCSSPGSGQPAPSEYETSPEQLFYRIAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAG
KAPAKIISFGGTVTTPWLKDVRLPCNSVGDPAPAVKWTKDSEDSAIPVSLDGHRLIHTNGTLLL
RAVKAEDSGYYTCTATNTGGFDTIIVNLLVQVPPDQPRLTVSKTSASSITLTWIPGDNGGSSIR
GFVLQYSVDNSEEWKDVFISSSERSFKLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGRE
PSFSKDQHLFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGVRANSSTEVFLTELR
EATWYELRMRACNSAGCGNETAQFATLDYDGSTIPPIKSAQGEGDDVKKLFTIGCPVILATLGV
ALLFVVRKKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKE
GIKQLGDDKATIPVTDAEFSQAVNPQSFCTGVSLHHPALIQSTGPLIDMSDIRPGTNPVSRKNV
KSAHSTRNRYSSQWTLTKCQASTPARTLTSDWRTVGSQHGVTVTESDSYSASLSQDTDKGRNSM
VSTESASSTYEELARAYEHAKLEEQLQHAKFEITECFISDSSSDQMTTGTNENADSMTSMSTPS
EPGICRFTASPPKPQDADRGKNVAVPIPHRANKSDYCNLPLYTKSEAFFRKADGREPCPVVPPR
EASMRNLTRAYHTQARHLTLDPASKPLGLPHPGATAATATATLPQRTLAMPAPPAGTAPPAPGP
TPSEPSAPPSAAPPAPSTEPPRAGGPHTKMGGSRDSLLEMSTPGVGRSQKQGAGAYSKSYTLV

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Ensembl Acc Id:

ENSRNOP00000022476 ⟸ ENSRNOT00000022476

RefSeq Acc Id:	XP_038937361 ⟸ XM_039081433
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A722 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937363 ⟸ XM_039081435
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000087336 ⟸ ENSRNOT00000102760

Protein Domains

Fibronectin type-III Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZPL7-F1-model_v2	AlphaFold	D3ZPL7	1-2111	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695918

Promoter ID:

EPDNEW_R6443

Type:

single initiation site

Name:

Dscaml1_1

Description:

DS cell adhesion molecule-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	49,737,852 - 49,737,912	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304887	AgrOrtholog
BioCyc Gene	G2FUF-30667	BioCyc
Ensembl Genes	ENSRNOG00000016502	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022476	ENTREZGENE
	ENSRNOT00000022476.6	UniProtKB/TrEMBL
	ENSRNOT00000102760	ENTREZGENE
	ENSRNOT00000102760.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	DSCAM/DSCAML_C	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
KEGG Report	rno:315615	UniProtKB/TrEMBL
NCBI Gene	315615	ENTREZGENE
PANTHER	CONTACTIN	UniProtKB/TrEMBL
	DS CELL ADHESION MOLECULE LIKE 1	UniProtKB/TrEMBL
	PROTEIN SIDEKICK	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
	FN3_DSCAM-DSCAML_C	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
PhenoGen	Dscaml1	PhenoGen
PROSITE	FN3	UniProtKB/TrEMBL
	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016502	RatGTEx
SMART	FN3	UniProtKB/TrEMBL
	IGc2	UniProtKB/TrEMBL
	IGv	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	FN_III-like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8I6A722	ENTREZGENE, UniProtKB/TrEMBL
	A6J449	ENTREZGENE, UniProtKB/TrEMBL
	D3ZPL7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Dscaml1	DS cell adhesion molecule-like 1	Dscaml1	Down syndrome cell adhesion molecule-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Dscaml1	Down syndrome cell adhesion molecule-like 1	Dscaml1_predicted	Down syndrome cell adhesion molecule-like 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Dscaml1_predicted	Down syndrome cell adhesion molecule-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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