Dscaml1 (DS cell adhesion molecule like 1) - Rat Genome Database

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Gene: Dscaml1 (DS cell adhesion molecule like 1) Chinchilla lanigera
Analyze
Symbol: Dscaml1
Name: DS cell adhesion molecule like 1
RGD ID: 9013025
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN brain development (ortholog); dendrite self-avoidance (ortholog); embryonic skeletal system morphogenesis (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Down syndrome cell adhesion molecule like 1; Down syndrome cell adhesion molecule-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,708,993 - 19,022,523 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,708,444 - 19,022,538 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell surface  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dscaml1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,708,993 - 19,022,523 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,708,444 - 19,022,538 (-)NCBIChiLan1.0ChiLan1.0
DSCAML1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811117,427,772 - 117,817,514 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11117,427,772 - 117,817,525 (-)EnsemblGRCh38hg38GRCh38
GRCh3711117,298,488 - 117,688,229 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,803,699 - 117,173,186 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411116,803,698 - 117,173,186NCBI
Celera11114,456,148 - 114,825,824 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,232,070 - 113,601,503 (-)NCBIHuRef
CHM1_111117,184,136 - 117,553,548 (-)NCBICHM1_1
T2T-CHM13v2.011117,444,420 - 117,833,926 (-)NCBIT2T-CHM13v2.0
Dscaml1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,338,735 - 45,665,011 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl945,337,926 - 45,665,010 (+)EnsemblGRCm39 Ensembl
GRCm38945,427,433 - 45,753,713 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,426,628 - 45,753,712 (+)EnsemblGRCm38mm10GRCm38
MGSCv37945,238,376 - 45,561,796 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36945,177,638 - 45,504,708 (+)NCBIMGSCv36mm8
Celera942,711,034 - 43,036,189 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Dscaml1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,637,054 - 54,954,042 (+)NCBIGRCr8
mRatBN7.2845,740,298 - 46,057,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,740,298 - 46,057,320 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx851,241,621 - 51,558,558 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0849,520,390 - 49,837,319 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0847,384,518 - 47,701,590 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,733,835 - 50,056,115 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,737,798 - 50,055,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,363,393 - 48,680,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,406,373 - 48,723,775 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1848,415,176 - 48,732,542 (+)NCBI
Celera845,323,185 - 45,640,085 (+)NCBICelera
Cytogenetic Map8q22NCBI
DSCAML1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29118,129,935 - 118,499,279 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,234,895 - 119,604,479 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011112,263,509 - 112,632,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111116,196,121 - 116,564,715 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11116,196,677 - 116,302,262 (-)Ensemblpanpan1.1panPan2
DSCAML1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,839,504 - 16,187,465 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,826,726 - 16,186,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,892,647 - 16,236,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,784,153 - 16,128,741 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,784,119 - 16,128,732 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,922,210 - 16,266,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,825,496 - 16,169,644 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,867,121 - 16,211,866 (+)NCBIUU_Cfam_GSD_1.0
Dscaml1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,704,544 - 100,018,127 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,620,469 - 2,939,578 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,619,910 - 2,939,578 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSCAML1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,785,701 - 45,147,140 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,785,142 - 45,153,256 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,858,136 - 49,975,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DSCAML1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,801,895 - 109,167,011 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,802,452 - 108,906,272 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,884,696 - 17,253,166 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dscaml1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478412,854,420 - 13,183,132 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478412,853,870 - 13,183,224 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018381   ⟹   ENSCLAP00000018202
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541218,708,993 - 19,022,523 (-)Ensembl
RefSeq Acc Id: XM_005378218   ⟹   XP_005378275
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,708,444 - 19,022,538 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378275 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018202
  ENSCLAP00000018202.1
Reference Protein Sequences
RefSeq Acc Id: XP_005378275   ⟸   XM_005378218
- UniProtKB: A0A8C2VSH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018202   ⟸   ENSCLAT00000018381
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018381 ENTREZGENE
  ENSCLAT00000018381.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene Dscaml1 ENTREZGENE
PANTHER BASIGIN RELATED UniProtKB/TrEMBL
  DOWN SYNDROME CELL ADHESION MOLECULE 3, ISOFORM E-RELATED UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C2VSH7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dscaml1  DS cell adhesion molecule like 1    Down syndrome cell adhesion molecule like 1  Symbol and/or name change 5135510 APPROVED