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Gene: Plekha4 (pleckstrin homology domain containing A4) Rattus norvegicus

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Symbol:

Plekha4

Name:

pleckstrin homology domain containing A4

RGD ID:

735133

Description:

Predicted to enable identical protein binding activity; phosphatidylinositol phosphate binding activity; and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in positive regulation of Wnt signaling pathway, planar cell polarity pathway and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human PLEKHA4 (pleckstrin homology domain containing A4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC72599; PEPP-1; PH domain-containing family A member 4; phosphoinositol 3-phosphate-binding protein 1; pleckstrin homology domain containing family A member 4; pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4; pleckstrin homology domain-containing family A member 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	105,142,296 - 105,165,297 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	105,142,348 - 105,165,297 (+)	Ensembl				GRCr8
mRatBN7.2	1	96,005,824 - 96,028,826 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	96,006,000 - 96,028,826 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	101,391,484 - 101,414,263 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,864,162 - 109,886,947 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	103,154,554 - 103,177,339 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,517,702 - 101,540,802 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,517,714 - 101,540,802 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	102,596,518 - 102,619,582 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	96,000,020 - 96,024,447 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	90,261,747 - 90,284,341 (+)	NCBI		Celera
RGSC_v3.1	1	96,078,130 - 96,102,558 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

all-trans-retinoic acid (EXP)

amitrole (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

camptothecin (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

dibutyl phthalate (EXP,ISO)

disodium selenite (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

ketoconazole (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

paracetamol (EXP)

paraquat (EXP)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

Triptolide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of canonical Wnt signaling pathway (IBA,IEA,ISO)

positive regulation of Wnt signaling pathway, planar cell polarity pathway (IBA,IEA,ISO)

Cellular Component

cytoplasm (IEA)

extrinsic component of cytoplasmic side of plasma membrane (IBA,IEA,ISO)

membrane (IEA)

Molecular Function

identical protein binding (ISO)

lipid binding (IEA)

phosphatidylinositol-3,4-bisphosphate binding (IBA,IEA,ISO)

phosphatidylinositol-3,5-bisphosphate binding (IBA,IEA,ISO)

phosphatidylinositol-3-phosphate binding (IBA,IEA,ISO)

phosphatidylinositol-4,5-bisphosphate binding (IBA,IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of pleckstrin-homology-domain-containing proteins with novel phosphoinositide-binding specificities.	Dowler S, etal., Biochem J 2000 Oct 1;351(Pt 1):19-31.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:31091453

Genomics

Comparative Map Data

Plekha4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	105,142,296 - 105,165,297 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	105,142,348 - 105,165,297 (+)	Ensembl				GRCr8
mRatBN7.2	1	96,005,824 - 96,028,826 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	96,006,000 - 96,028,826 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	101,391,484 - 101,414,263 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,864,162 - 109,886,947 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	103,154,554 - 103,177,339 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,517,702 - 101,540,802 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,517,714 - 101,540,802 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	102,596,518 - 102,619,582 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	96,000,020 - 96,024,447 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	90,261,747 - 90,284,341 (+)	NCBI		Celera
RGSC_v3.1	1	96,078,130 - 96,102,558 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

PLEKHA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	48,837,097 - 48,868,617 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	48,837,091 - 48,868,855 (-)	Ensembl			hg38	GRCh38
GRCh37	19	49,340,354 - 49,371,874 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,032,167 - 54,063,670 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	54,032,166 - 54,063,670	NCBI
Celera	19	46,207,718 - 46,239,248 (-)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	45,716,787 - 45,748,327 (-)	NCBI		HuRef
CHM1_1	19	49,342,240 - 49,373,751 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	51,831,976 - 51,863,478 (-)	NCBI		T2T-CHM13v2.0

Plekha4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	45,175,754 - 45,203,653 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	45,175,754 - 45,203,653 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	45,526,330 - 45,554,229 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,526,330 - 45,554,229 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	52,781,700 - 52,809,599 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	45,398,035 - 45,422,271 (+)	NCBI		MGSCv36	mm8
Celera	7	40,982,828 - 41,010,711 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.34	NCBI

Plekha4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,757,556 - 1,771,393 (+)	Ensembl
ChiLan1.0	NW_004955559	1,756,695 - 1,775,558 (+)	NCBI	ChiLan1.0	ChiLan1.0

PLEKHA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	54,941,667 - 54,973,087 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	56,867,753 - 56,899,016 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	45,837,738 - 45,868,961 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	54,886,850 - 54,918,339 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	54,886,850 - 54,918,334 (+)	Ensembl			panPan2	panpan1.1

PLEKHA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	107,491,617 - 107,517,993 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	107,492,587 - 107,517,800 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	107,014,258 - 107,040,442 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	108,016,407 - 108,042,600 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	108,016,431 - 108,042,605 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	107,683,365 - 107,709,534 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	107,330,227 - 107,356,423 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	108,165,850 - 108,192,037 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Plekha4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,272,089 - 21,290,524 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	2,890,463 - 2,907,871 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	2,890,279 - 2,908,423 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLEKHA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,144,020 - 54,170,638 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	54,144,016 - 54,170,661 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	49,891,388 - 49,918,032 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLEKHA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	42,076,695 - 42,110,904 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	21,958,628 - 21,988,275 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plekha4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	5,109,874 - 5,122,521 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	5,108,928 - 5,133,950 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Plekha4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	153,960,122 - 153,983,411 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Plekha4
174 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	45
Count of miRNA genes:	41
Interacting mature miRNAs:	45
Transcripts:	ENSRNOT00000028423
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	101228864	146228864	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	102359314	153680016	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	97582336	142582336	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	101594089	146594089	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	100345976	145345976	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	158	91	90	59	70	59	6	333	170	11	137	80	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_199101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028423 ⟹ ENSRNOP00000028423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	105,142,348 - 105,165,296 (+)	Ensembl
mRatBN7.2 Ensembl	1	96,006,052 - 96,028,826 (+)	Ensembl
Rnor_6.0 Ensembl	1	101,517,714 - 101,540,802 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097781 ⟹ ENSRNOP00000093447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	105,142,348 - 105,165,296 (+)	Ensembl
mRatBN7.2 Ensembl	1	96,006,000 - 96,028,826 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098814 ⟹ ENSRNOP00000083080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	105,144,054 - 105,165,297 (+)	Ensembl
mRatBN7.2 Ensembl	1	96,007,588 - 96,028,826 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173288 ⟹ ENSRNOP00000100346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	105,142,348 - 105,165,296 (+)	Ensembl

RefSeq Acc Id:

NM_199101 ⟹ NP_954532

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,518 - 105,165,297 (+)	NCBI
mRatBN7.2	1	96,006,052 - 96,028,826 (+)	NCBI
Rnor_6.0	1	101,517,896 - 101,540,802 (+)	NCBI
Rnor_5.0	1	102,596,518 - 102,619,582 (+)	NCBI
RGSC_v3.4	1	96,000,020 - 96,024,447 (+)	RGD
Celera	1	90,261,747 - 90,284,341 (+)	RGD

Sequence:

show sequence

CAGCAGCAGTCAGGTAGGGAGAGGGACTGGGAGAGGTGACATAGGCAGAGGGGAGGGGAGAGAG
AGAGAGAGAGAGGAAGAGACAGAGACACCGAGAGACACAGTGGGAGAGACAGAAAGAGACAGAG
AGGGGGGAGACAGAGAGCTCACAAAACAGAGAAGAAAAGAAAGCAAGTATCAGGTGAGGAGACC
AACTCTGAGAGGCAGTGTCTAAGACACAAAAAGAGGTGACATCCTGTCACCGGGACACCAGAGC
TGGCTCTCGATGGAGCAGGGCCGACCCAGGAGCAGCCTCAGCCTGACCAGCAGTGCTTCCACTG
TATCCTCCCTGAGCAGCCTGAGCGCCAAGAAGCCTACTCGTGTGGTACACAAGGTCCATGCCTT
TGGGAAAAGGAACAATGCACTTCGGCGAGACCCCAACCTGCCTGTGCACATTCGTGGCTGGCTG
CATAAACAGGATAGCTCAGGCCTCCGGCTGTGGAAACGCCGTTGGTTCGTCCTTTCAGGCCATT
GCCTCTTCTACTACAAGGACAGCAGAGAAGAGAGTGTCCTGGGCAGTGTACTGTTACCCAGCTA
CAGTGTCAGGCCGGATGGGCCAGGAGCCCCACGAGGCCGGCGATTCACCTTCACGGCAGAGCAC
CCGGGCATGAGGACCTATGTCCTTGCAGCTGACACATTGGAAGACCTGAGAGGTTGGCTTCGAG
CACTGGGAAAGGCCTCTCGTGCAGAGGGGGAAGATTGTGGACTACCGAGGTCCCCTGCACGTCC
CAGGCCTGGGGAAGGTCCCGGGGGTCCCGGAGGACCCCCCGAGGTGAACAGAAGGGAAGAGGGG
CGAACCTCAGAATCACCAGAGGTAGCTCCGCTCTCCAGAGGTCCTGGCAGACATGAAATGCACG
CTCCCGGCTCTTCAGCTGATCTGCAGCCTGACACCTGGAGTCGGAGAACCAGGAGCCCAGAGCC
GTTCTCACCCCTCTCCCGGCCTCCCTCCCCTCTGAGCCTTCCCCGTCCTCGTTCTGCTCCGGTC
AGGCGACCACCTCTCTCAGCAGGAGACATTTCATTTCCTGCTCGACCGCACACTCCCTTGAGTC
GCATCGATGTCCGACCTCCTCTGGATTGGGGACCCCAAAGACAGACCCTCTCCCGACCTCCCAT
TCCACGCCGAGGACCTTTCTCTGAAGCAGGCGGAGGACGGCCACCCAGGAGCCCCCAGCTCCGG
ACACCAGAGCATAGAACACAGTCTACCCAGGTCTCCTCTGGTTCATCCACCTACCTCCAGCTGC
CCCCAAGACCCCCTGGCACCCAGGCTTCCATGATTTTGCTGCCAGGACCCCCTGTGGACTCAAC
TTTGCATCAGAGCTTGGAGACAGATACTTTGTTGACCAAGCTGTGTGGGCAGGACCGGCTCCTG
AGGCAGCTACAAGAGGATCTGGACAAGAGGCAGGAAGAGAAGGAGCAGCTAGAGGCAGCCTTGG
AGCTGACCCGGCAGCAGCTGGGTCAGGCTACCCGGGAGGCTGCAGCTTCTGGGAAGGCCTGGGG
TCGCCAACGCCTCCTGCAGGACCGGCTGGTGAATGTGAGGGCTGCTCTGTGTCACCTGACTCAG
GAGCGAGAGCGGGTTTGGGACACGTACAGCGGCCTGGAGCAGGATCTCGGCACGTTAAGAGAGA
CTCTCGAGTACCTGCTGCACCTCGGGTCTCCCCAGGACCGTGCGTCTGCCCAGCAGCAGCTGTG
GATGGTGGAGGACACATTGGCAGGTCTAGGTGGCCCCCAGAAACAGCCCCCACATACTGAGCCC
AAGTCTCCATCCCCTGCACCCCAACGAGAGGAGTCCTCAGAGCGGGAGAGCCTTTCAGAGTCAC
TGGAGCTCAGCTCCCCTCAGTCCCCTGAGGTGGACTGGGGTCAACCCCCAGGAGGTGACAGAGC
CCTCAGCAGCTCTCAGTCAGGTGTCGGGTCTCCAAGAGTCTCCCGGGCATCCAGCCCTGAATGT
CGCCAACAGTCATCTCCGCTGCTGAGAACTAAGGCCCCGCTGGCGCGGCCTAGGATGAGCGCTC
AGGAGCAGCTGGAGCGCATGCGTAGAAACCAAGCATGTGGGCTCTCTCTTCCTCGCCCTACCTC
CCCAAGGCTCCTGACCCTGGGAAGGACACTATCCCCAGTTCCACGCCAGCCTGACATGGAGCAG
AGGCCTATTGTAGGAGCTGCGAAATGGCTCAGGAGTTCCGGGTCATGGAGTAGTCCTAGGCACT
CCACAACCTACTCACCCGTGTCTGGAGGCCACCGGGAACGAGTGCTCAGCCTCTCCCAAGCTCT
TGCTACAGAGGCTTCCCAGTGGCACAGGCTGATGACAGCCTCTCCAGAGAGAAATTTGGACACC
AGGGGAGACTGTCTCCAGCCAAGTCCACAGCCTCCCAGTGAAGAGCTGCCCCAGGTCACCTCGT
CCCCAACTTCTCACAAGGCTAACTCGGCTACCACAGGGTTCTCATGCCAAGGGAGTGGGAGAGG
CCTGGCTCCGTGGGAGCCCAGGTGGGACCCTGGGAAGGCCCCTCCAGCTCTGGCCCAGGAAGAG
GGGGCATGGCCCCTGAGAGTCACTCTGCTGCAGTCCAGCTTTTGACTCCTGCCTTTGCACTGGG
TGCTAAAGGCTGGAAGCACAACCTTGAGGTGTGGGACCATTCAGGACCACAGGGGAGAGGTTCA
TTTCAGCCTGTGTTCTAGGAGGGCCGGGGCTATGATGGTCAAAGATTGATTATCCCAACACTGT
CCGAACTTGGATTAAAACTTTGAACTAGTCAATAAATAGCTTTATTCTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006229071 ⟹ XP_006229133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,296 - 105,165,297 (+)	NCBI
mRatBN7.2	1	96,005,824 - 96,028,826 (+)	NCBI
Rnor_6.0	1	101,517,702 - 101,540,802 (+)	NCBI
Rnor_5.0	1	102,596,518 - 102,619,582 (+)	NCBI

Sequence:

show sequence

GGCTGCTGGAGAGAGGGAGAGCCCGGCAGAGAGGAAAGAGAAACTGGGAGAGGGAGGAAGAGAG
AAAGTGAGGAAGAGAACTTGAAAAGGAAAGGAAACAGATGTGTCTGATCAGGGAGATAGAGGAA
GAGACTGAGGAGAACGGAAGTAGATGAGTGGGATGGAGTGGGGGAGGGGACGGGGAAGTGATTA
GACAGCAGCAGTCAGGTAGGGAGAGGGACTGGGAGAGGTGACATAGGCAGAGGGGAGGGGAGAG
AGAGAGAGAGAGAGGAAGAGACAGAGACACCGAGAGACACAGTGGGAGAGACAGAAAGAGACAG
AGAGGGGGGAGACAGAGAGCTCACAAAACAGAGAAGAAAAGAAAGCAAGTATCAGGTGAGGAGA
CCAACTCTGAGAGGCAGTGTCTAAGACACAAAAAGAGGTGACATCCTGTCACCGGGACACCAGA
GCTGGCTCTCGATGGAGCAGGGCCGACCCAGGAGCAGCCTCAGCCTGACCAGCAGTGCTTCCAC
TGTATCCTCCCTGAGCAGCCTGAGCGCCAAGAAGCCTACTCGTGTGGTACACAAGGTCCATGCC
TTTGGGAAAAGGAACAATGCACTTCGGCGAGACCCCAACCTGCCTGTGCACATTCGTGGCTGGC
TGCATAAACAGGATAGCTCAGGCCTCCGGCTGTGGAAACGCCGTTGGTTCGTCCTTTCAGGCCA
TTGCCTCTTCTACTACAAGGACAGCAGAGAAGAGAGTGTCCTGGGCAGTGTACTGTTACCCAGC
TACAGTGTCAGGCCGGATGGGCCAGGAGCCCCACGAGGCCGGCGATTCACCTTCACGGCAGAGC
ACCCGGGCATGAGGACCTATGTCCTTGCAGCTGACACATTGGAAGACCTGAGAGGTTGGCTTCG
AGCACTGGGAAAGGCCTCTCGTGCAGAGGGGGAAGATTGGCCGTTCTCACCCCTCTCCCGGCCT
CCCTCCCCTCTGAGCCTTCCCCGTCCTCGTTCTGCTCCGGTCAGGCGACCACCTCTCTCAGCAG
GAGACATTTCATTTCCTGCTCGACCGCACACTCCCTTGAGTCGCATCGATGTCCGACCTCCTCT
GGATTGGGGACCCCAAAGACAGACCCTCTCCCGACCTCCCATTCCACGCCGAGGACCTTTCTCT
GAAGCAGGCGGAGGACGGCCACCCAGGAGCCCCCAGCTCCGGACACCAGAGCATAGAACACAGT
CTACCCAGGTCTCCTCTGGTTCATCCACCTACCTCCAGCTGCCCCCAAGACCCCCTGGCACCCA
GGCTTCCATGATTTTGCTGCCAGGACCCCCTGTGGACTCAACTTTGCATCAGAGCTTGGAGACA
GATACTTTGTTGACCAAGCTGTGTGGGCAGGACCGGCTCCTGAGGCAGCTACAAGAGGATCTGG
ACAAGAGGCAGGAAGAGAAGGAGCAGCTAGAGGCAGCCTTGGAGCTGACCCGGCAGCAGCTGGG
TCAGGCTACCCGGGAGGCTGCAGCTTCTGGGAAGGCCTGGGGTCGCCAACGCCTCCTGCAGGAC
CGGCTGGTGAATGTGAGGGCTGCTCTGTGTCACCTGACTCAGGAGCGAGAGCGGGTTTGGGACA
CGTACAGCGGCCTGGAGCAGGATCTCGGCACGTTAAGAGAGACTCTCGAGTACCTGCTGCACCT
CGGGTCTCCCCAGGACCGTGCGTCTGCCCAGCAGCAGCTGTGGATGGTGGAGGACACATTGGCA
GGTCTAGGTGGCCCCCAGAAACAGCCCCCACATACTGAGCCCAAGTCTCCATCCCCTGCACCCC
AACGAGAGGAGTCCTCAGAGCGGGAGAGCCTTTCAGAGTCACTGGAGCTCAGCTCCCCTCAGTC
CCCTGAGGTGGACTGGGGTCAACCCCCAGGAGGTGACAGAGCCCTCAGCAGCTCTCAGTCAGGT
GTCGGGTCTCCAAGAGTCTCCCGGGCATCCAGCCCTGAATGTCGCCAACAGTCATCTCCGCTGC
TGAGAACTAAGGCCCCGCTGGCGCGGCCTAGGATGAGCGCTCAGGAGCAGCTGGAGCGCATGCG
TAGAAACCAAGCATGTGGGCTCTCTCTTCCTCGCCCTACCTCCCCAAGGCTCCTGACCCTGGGA
AGGACACTATCCCCAGTTCCACGCCAGCCTGACATGGAGCAGAGGCCTATTGTAGGAGCTGCGA
AATGGCTCAGGAGTTCCGGGTCATGGAGTAGTCCTAGGCACTCCACAACCTACTCACCCGTGTC
TGGAGGCCACCGGGAACGAGTGCTCAGCCTCTCCCAAGCTCTTGCTACAGAGGCTTCCCAGTGG
CACAGGCTGATGACAGCCTCTCCAGAGAGAAATTTGGACACCAGGGGAGACTGTCTCCAGCCAA
GTCCACAGCCTCCCAGTGAAGAGCTGCCCCAGGTCACCTCGTCCCCAACTTCTCACAAGGCTAA
CTCGGCTACCACAGGGTTCTCATGCCAAGGGAGTGGGAGAGGCCTGGCTCCGTGGGAGCCCAGG
TGGGACCCTGGGAAGGCCCCTCCAGCTCTGGCCCAGGAAGAGGGGGCATGGCCCCTGAGAGTCA
CTCTGCTGCAGTCCAGCTTTTGACTCCTGCCTTTGCACTGGGTGCTAAAGGCTGGAAGCACAAC
CTTGAGGTGTGGGACCATTCAGGACCACAGGGGAGAGGTTCATTTCAGCCTGTGTTCTAGGAGG
GCCGGGGCTATGATGGTCAAAGATTGATTATCCCAACACTGTCCGAACTTGGATTAAAACTTTG
AACTAGTCAATAAATAGCTTTATTCTCTC

hide sequence

RefSeq Acc Id:

XM_006229072 ⟹ XP_006229134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,314 - 105,165,297 (+)	NCBI
mRatBN7.2	1	96,005,847 - 96,028,826 (+)	NCBI
Rnor_6.0	1	101,517,702 - 101,540,802 (+)	NCBI
Rnor_5.0	1	102,596,518 - 102,619,582 (+)	NCBI

Sequence:

show sequence

GGCTGCTGGAGAGAGGGAGAGCCCGGCAGAGAGGAAAGAGAAACTGGGAGAGGGAGGAAGAGAG
AAAGTGAGGAAGAGAACTTGAAAAGGAAAGGAAACAGATGTGTCTGATCAGGGAGATAGAGGAA
GAGACTGAGGAGAACGGAAGTAGATGAGTGGGATGGAGTGGGGGAGGGGACGGGGAAGTGATTA
GACAGCAGCAGTCAGGTAGGGAGAGGGACTGGGAGAGGTGACATAGGCAGAGGGGAGGGGAGAG
AGAGAGAGAGAGAGGAAGAGACAGAGACACCGAGAGACACAGTGGGAGAGACAGAAAGAGACAG
AGAGGGGGGAGACAGAGAGCTCACAAAACAGAGAAGAAAAGAAAGCAAGTATCAGGTGAGGAGA
CCAACTCTGAGAGGCAGTGTCTAAGACACAAAAAGAGGTGACATCCTGTCACCGGGACACCAGA
GCTGGCTCTCGATGGAGCAGGGCCGACCCAGGAGCAGCCTCAGCCTGACCAGCAGTGCTTCCAC
TGTATCCTCCCTGAGCAGCCTGAGCGCCAAGAAGCCTACTCGTGTGGTACACAAGGTCCATGCC
TTTGGGAAAAGGAACAATGCACTTCGGCGAGACCCCAACCTGCCTGTGCACATTCGTGGCTGGC
TGCATAAACAGGATAGCTCAGGCCTCCGGCTGTGGAAACGCCGTTGGTTCGTCCTTTCAGGCCA
TTGCCTCTTCTACTACAAGGACAGCAGAGAAGAGAGTGTCCTGGGCAGTGTACTGTTACCCAGC
TACAGTGTCAGGCCGGATGGGCCAGGAGCCCCACGAGGCCGGCGATTCACCTTCACGGCAGAGC
ACCCGGGCATGAGGACCTATGTCCTTGCAGCTGACACATTGGAAGACCTGAGAGGTTGGCTTCG
AGCACTGGGAAAGGCCTCTCGTGCAGAGGGGGAAGATTGTGGACTACCGAGGTCCCCTGCACGT
CCCAGGCCTGGGGAAGGTCCCGGGGGTCCCGGAGGACCCCCCGAGGTGAACAGAAGGGAAGAGG
GGCGAACCTCAGAATCACCAGAGGTAGCTCCGCTCTCCAGAGGTCCTGGCAGACATGAAATGCA
CGCTCCCGGCTCTTCAGCTGATCTGCAGCCTGACACCTGGAGTCGGAGAACCAGGAGCCCAGAG
CCGTTCTCACCCCTCTCCCGGCCTCCCTCCCCTCTGAGCCTTCCCCGTCCTCGTTCTGCTCCGG
TCAGGCGACCACCTCTCTCAGCAGGAGACATTTCATTTCCTGCTCGACCGCACACTCCCTTGAG
TCGCATCGATGTCCGACCTCCTCTGGATTGGGGACCCCAAAGACAGACCCTCTCCCGACCTCCC
ATTCCACGCCGAGGACCTTTCTCTGAAGCAGGCGGAGGACGGCCACCCAGGAGCCCCCAGCTCC
GGACACCAGAGCATAGAACACAGTCTACCCAGGTCTCCTCTGGTTCATCCACCTACCTCCAGCT
GCCCCCAAGACCCCCTGGCACCCAGGCTTCCATGATTTTGCTGCCAGGACCCCCTGTGGACTCA
ACTTTGCATCAGAGCTTGGAGACAGATACTTTGTTGACCAAGCTGTGTGGGCAGGACCGGCTCC
TGAGGCAGCTACAAGAGGATCTGGACAAGAGGCAGGAAGAGAAGGAGCAGCTAGAGGCAGCCTT
GGAGCTGACCCGGCAGCAGCTGGGTCAGGCTACCCGGGAGGCTGCAGCTTCTGGGAAGGCCTGG
GGTCGCCAACGCCTCCTGCAGGACCGGCTGGTGAATGTGAGGGCTGCTCTGTGTCACCTGACTC
AGGAGCGAGAGCGGGTTTGGGACACGTACAGCGGCCTGGAGCAGGATCTCGGCACGTTAAGAGA
GACTCTCGAGTACCTGCTGCACCTCGGGTCTCCCCAGGACCGTGCGTCTGCCCAGCAGCAGCTG
TGGATGGTGGAGGACACATTGGCAGGTCTAGGTGGCCCCCAGAAACAGCCCCCACATACTGAGC
CCAAGTCTCCATCCCCTGCACCCCAACGAGAGGAGTCCTCAGAGCGGGAGAGCCTTTCAGAGTC
ACTGGAGCTCAGCTCCCCTCAGTCCCCTGAGGTGGACTGGGGTCAACCCCCAGGAGGTGACAGA
GCCCTCAGCAGCTCTCAGTCAGGTGTCGGGTCTCCAAGAGTCTCCCGGGCATCCAGCCCTGAAT
GTCGCCAACAGTCATCTCCGCTGCTGAGAACTAAGGCCCCGCTGGCGCGGCCTAGGATGAGCGC
TCAGGAGCAGCTGGAGCGCATGCGTAGAAACCAAGCATGTGGGCTCTCTCTTCCTCGCCCTACC
TCCCCAAGGCTCCTGACCCTGGGAAGGACACTATCCCCAGTTCCACGCCAGCCTGACATGGAGC
AGAGGCCTATTGTAGGAGCTGCGAAATGGCTCAGGAGTTCCGGGTCATGGAGTAGCCTCTCCAG
AGAGAAATTTGGACACCAGGGGAGACTGTCTCCAGCCAAGTCCACAGCCTCCCAGTGAAGAGCT
GCCCCAGGTCACCTCGTCCCCAACTTCTCACAAGGCTAACTCGGCTACCACAGGGTTCTCATGC
CAAGGGAGTGGGAGAGGCCTGGCTCCGTGGGAGCCCAGGTGGGACCCTGGGAAGGCCCCTCCAG
CTCTGGCCCAGGAAGAGGGGGCATGGCCCCTGAGAGTCACTCTGCTGCAGTCCAGCTTTTGACT
CCTGCCTTTGCACTGGGTGCTAAAGGCTGGAAGCACAACCTTGAGGTGTGGGACCATTCAGGAC
CACAGGGGAGAGGTTCATTTCAGCCTGTGTTCTAGGAGGGCCGGGGCTATGATGGTCAAAGATT
GATTATCCCAACACTGTCCGAACTTGGATTAAAACTTTGAACTAGTCAATAAATAGCTTTATTC
TCTC

hide sequence

RefSeq Acc Id:

XM_039112147 ⟹ XP_038968075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,306 - 105,165,297 (+)	NCBI
mRatBN7.2	1	96,005,841 - 96,028,826 (+)	NCBI

RefSeq Acc Id:

XM_039112161 ⟹ XP_038968089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,305 - 105,165,297 (+)	NCBI
mRatBN7.2	1	96,005,841 - 96,028,826 (+)	NCBI

RefSeq Acc Id:

XM_063262037 ⟹ XP_063118107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,305 - 105,165,297 (+)	NCBI

RefSeq Acc Id:

XM_063262045 ⟹ XP_063118115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	105,142,299 - 105,165,297 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_954532	(Get FASTA)	NCBI Sequence Viewer
	XP_006229133	(Get FASTA)	NCBI Sequence Viewer
	XP_006229134	(Get FASTA)	NCBI Sequence Viewer
	XP_038968075	(Get FASTA)	NCBI Sequence Viewer
	XP_038968089	(Get FASTA)	NCBI Sequence Viewer
	XP_063118107	(Get FASTA)	NCBI Sequence Viewer
	XP_063118115	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61738	(Get FASTA)	NCBI Sequence Viewer
	EDM07333	(Get FASTA)	NCBI Sequence Viewer
	EDM07334	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028423
	ENSRNOP00000028423.4
	ENSRNOP00000093447
	ENSRNOP00000100346
GenBank Protein	P60669	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_954532 ⟸ NM_199101

- UniProtKB:

P60669 (UniProtKB/Swiss-Prot), A0A8I5ZVU5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEQGRPRSSLSLTSSASTVSSLSSLSAKKPTRVVHKVHAFGKRNNALRRDPNLPVHIRGWLHKQ
DSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGM
RTYVLAADTLEDLRGWLRALGKASRAEGEDCGLPRSPARPRPGEGPGGPGGPPEVNRREEGRTS
ESPEVAPLSRGPGRHEMHAPGSSADLQPDTWSRRTRSPEPFSPLSRPPSPLSLPRPRSAPVRRP
PLSAGDISFPARPHTPLSRIDVRPPLDWGPQRQTLSRPPIPRRGPFSEAGGGRPPRSPQLRTPE
HRTQSTQVSSGSSTYLQLPPRPPGTQASMILLPGPPVDSTLHQSLETDTLLTKLCGQDRLLRQL
QEDLDKRQEEKEQLEAALELTRQQLGQATREAAASGKAWGRQRLLQDRLVNVRAALCHLTQERE
RVWDTYSGLEQDLGTLRETLEYLLHLGSPQDRASAQQQLWMVEDTLAGLGGPQKQPPHTEPKSP
SPAPQREESSERESLSESLELSSPQSPEVDWGQPPGGDRALSSSQSGVGSPRVSRASSPECRQQ
SSPLLRTKAPLARPRMSAQEQLERMRRNQACGLSLPRPTSPRLLTLGRTLSPVPRQPDMEQRPI
VGAAKWLRSSGSWSSPRHSTTYSPVSGGHRERVLSLSQALATEASQWHRLMTASPERNLDTRGD
CLQPSPQPPSEELPQVTSSPTSHKANSATTGFSCQGSGRGLAPWEPRWDPGKAPPALAQEEGAW
PLRVTLLQSSF

hide sequence

RefSeq Acc Id:	XP_006229134 ⟸ XM_006229072
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZVU5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQGRPRSSLSLTSSASTVSSLSSLSAKKPTRVVHKVHAFGKRNNALRRDPNLPVHIRGWLHKQ DSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGM RTYVLAADTLEDLRGWLRALGKASRAEGEDCGLPRSPARPRPGEGPGGPGGPPEVNRREEGRTS ESPEVAPLSRGPGRHEMHAPGSSADLQPDTWSRRTRSPEPFSPLSRPPSPLSLPRPRSAPVRRP PLSAGDISFPARPHTPLSRIDVRPPLDWGPQRQTLSRPPIPRRGPFSEAGGGRPPRSPQLRTPE HRTQSTQVSSGSSTYLQLPPRPPGTQASMILLPGPPVDSTLHQSLETDTLLTKLCGQDRLLRQL QEDLDKRQEEKEQLEAALELTRQQLGQATREAAASGKAWGRQRLLQDRLVNVRAALCHLTQERE RVWDTYSGLEQDLGTLRETLEYLLHLGSPQDRASAQQQLWMVEDTLAGLGGPQKQPPHTEPKSP SPAPQREESSERESLSESLELSSPQSPEVDWGQPPGGDRALSSSQSGVGSPRVSRASSPECRQQ SSPLLRTKAPLARPRMSAQEQLERMRRNQACGLSLPRPTSPRLLTLGRTLSPVPRQPDMEQRPI VGAAKWLRSSGSWSSLSREKFGHQGRLSPAKSTASQ hide sequence

RefSeq Acc Id:	XP_006229133 ⟸ XM_006229071
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZVU5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQGRPRSSLSLTSSASTVSSLSSLSAKKPTRVVHKVHAFGKRNNALRRDPNLPVHIRGWLHKQ DSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGM RTYVLAADTLEDLRGWLRALGKASRAEGEDWPFSPLSRPPSPLSLPRPRSAPVRRPPLSAGDIS FPARPHTPLSRIDVRPPLDWGPQRQTLSRPPIPRRGPFSEAGGGRPPRSPQLRTPEHRTQSTQV SSGSSTYLQLPPRPPGTQASMILLPGPPVDSTLHQSLETDTLLTKLCGQDRLLRQLQEDLDKRQ EEKEQLEAALELTRQQLGQATREAAASGKAWGRQRLLQDRLVNVRAALCHLTQERERVWDTYSG LEQDLGTLRETLEYLLHLGSPQDRASAQQQLWMVEDTLAGLGGPQKQPPHTEPKSPSPAPQREE SSERESLSESLELSSPQSPEVDWGQPPGGDRALSSSQSGVGSPRVSRASSPECRQQSSPLLRTK APLARPRMSAQEQLERMRRNQACGLSLPRPTSPRLLTLGRTLSPVPRQPDMEQRPIVGAAKWLR SSGSWSSPRHSTTYSPVSGGHRERVLSLSQALATEASQWHRLMTASPERNLDTRGDCLQPSPQP PSEELPQVTSSPTSHKANSATTGFSCQGSGRGLAPWEPRWDPGKAPPALAQEEGAWPLRVTLLQ SSF hide sequence

Ensembl Acc Id:

ENSRNOP00000028423 ⟸ ENSRNOT00000028423

RefSeq Acc Id:	XP_038968075 ⟸ XM_039112147
- Peptide Label:	isoform X1
- UniProtKB:	A6JB50 (UniProtKB/TrEMBL), A0A8I5ZVU5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968089 ⟸ XM_039112161
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GKA6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093447 ⟸ ENSRNOT00000097781

Ensembl Acc Id:

ENSRNOP00000083080 ⟸ ENSRNOT00000098814

RefSeq Acc Id:	XP_063118115 ⟸ XM_063262045
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063118107 ⟸ XM_063262037
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GKA6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100346 ⟸ ENSRNOT00000173288

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P60669-F1-model_v2	AlphaFold	P60669	1-779	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690047

Promoter ID:

EPDNEW_R570

Type:

initiation region

Name:

Plekha4_1

Description:

pleckstrin homology domain containing A4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	101,517,729 - 101,517,789	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735133	AgrOrtholog
BioCyc Gene	G2FUF-59677	BioCyc
Ensembl Genes	ENSRNOG00000020942	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000028423	ENTREZGENE
	ENSRNOT00000028423.6	UniProtKB/Swiss-Prot
	ENSRNOT00000097781	ENTREZGENE
	ENSRNOT00000173288	ENTREZGENE
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599064	IMAGE-MGC_LOAD
InterPro	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	PKHA4/5/6/7_PH	UniProtKB/Swiss-Prot
KEGG Report	rno:308584	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72599	IMAGE-MGC_LOAD
NCBI Gene	308584	ENTREZGENE
PANTHER	PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN	UniProtKB/Swiss-Prot
	PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 4	UniProtKB/Swiss-Prot
Pfam	PF00169	UniProtKB/Swiss-Prot
PhenoGen	Plekha4	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000020942	RatGTEx
SMART	SM00233	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZVU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GKA6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LC31_RAT	UniProtKB/TrEMBL
	A6JB50	ENTREZGENE, UniProtKB/TrEMBL
	A6JB51_RAT	UniProtKB/TrEMBL
	P60669	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-30	Plekha4	pleckstrin homology domain containing A4	Plekha4	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Plekha4	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar