Dll3 (delta like canonical Notch ligand 3) - Rat Genome Database

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Gene: Dll3 (delta like canonical Notch ligand 3) Rattus norvegicus
Analyze
Symbol: Dll3
Name: delta like canonical Notch ligand 3
RGD ID: 70953
Description: Enables Notch binding activity. Involved in negative regulation of Notch signaling pathway; negative regulation of astrocyte differentiation; and positive regulation of neurogenesis. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in dysostosis and spondylocostal dysostosis 1. Orthologous to human DLL3 (delta like canonical Notch ligand 3); PARTICIPATES IN altered Notch signaling pathway; altered Notch signaling pathway involving the main players; Notch signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: delta (Drosophila)-like 3; delta-like 3 (Drosophila); delta-like protein 3; delta3; drosophila Delta homolog 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,689,577 - 92,698,125 (-)NCBIGRCr8
mRatBN7.2183,562,011 - 83,570,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,562,014 - 83,569,750 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,973,668 - 88,982,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,431,999 - 97,440,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,729,526 - 90,737,881 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,485,875 - 85,493,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,485,289 - 85,493,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,697,034 - 86,704,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,373,482 - 83,381,219 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1183,451,593 - 83,459,330 (-)NCBI
Celera177,961,035 - 77,968,719 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Dll3Ratdysostosis  ISODLL3 (Homo sapiens)1599775DNA:nonsense mutations and missense mutationRGD 
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Original Reference(s)
Dll3RatCarpenter syndrome 2  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Carpenter syndrome 2ClinVarPMID:28492532
Dll3Ratcongenital hypoplastic anemia  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital hypoplastic anemiaClinVarPMID:28492532
Dll3Ratcraniosynostosis 1  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: TWIST1-related craniosynostosisClinVarPMID:28492532
Dll3RatDiamond-Blackfan anemia  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Aase syndromeClinVarPMID:28492532
Dll3Ratgenetic disease  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Dll3RatLEUKODYSTROPHY AND ACQUIRED MICROCEPHALY WITH OR WITHOUT DYSTONIA  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Leukodystrophy and acquired microcephaly with or without dystoniaClinVarPMID:25741868 and PMID:28492532
Dll3Ratmaple syrup urine disease  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Maple syrup urine diseaseClinVarPMID:28492532
Dll3Ratmaturity-onset diabetes of the young type 1  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Type 2 diabetes mellitusClinVarPMID:28492532
Dll3Ratspondylocostal dysostosis  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Spondylocostal dysostosisClinVar 
Dll3Ratspondylocostal dysostosis 1  ISODLL3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10742114 more ...
Dll3Ratsyndactyly  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: SyndactylyClinVarPMID:15717203 more ...
Dll3Rattype 2 diabetes mellitus  ISODLL3 (Homo sapiens)8554872ClinVar Annotator: match by term: Type 2 diabetes mellitusClinVarPMID:28492532
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Original Reference(s)
Dll3RatCongenital Abnormalities  ISODLL3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17849441
Dll3RatCraniofacial Abnormalities  ISODLL3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17849441
Dll3Ratmalignant astrocytoma  ISODLL3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21127729
Dll3Ratosteochondrodysplasia  ISODLL3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11146471
Dll3Ratscoliosis  ISODLL3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17849441
Dll3RatSpondylocostal Dysostosis, Autosomal Recessive  ISODLL3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
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Original Reference(s)
Dll3Ratspondylocostal dysostosis  ISSDLL3 (Homo sapiens)13592920OMIM:122600 more ...MouseDO 
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Original Reference(s)
Dll3Ratspondylocostal dysostosis 1  ISODLL3 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Dll3Rat17beta-estradiol affects expressionISODLL3 (Homo sapiens)6480464Estradiol affects the expression of DLL3 mRNACTDPMID:22574217
Dll3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of DLL3 mRNACTDPMID:11752688
Dll3Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DLL3 mRNACTDPMID:32109520
Dll3Rat3,7-dihydropurine-6-thione decreases expressionEXP 6480464Mercaptopurine results in decreased expression of DLL3 mRNACTDPMID:23358152
Dll3Rat4,4'-sulfonyldiphenol increases expressionISODll3 (Mus musculus)6480464bisphenol S results in increased expression of DLL3 mRNACTDPMID:30951980
Dll3Rat5-aza-2'-deoxycytidine affects expressionISODLL3 (Homo sapiens)6480464Decitabine affects the expression of DLL3 mRNACTDPMID:23300844
Dll3Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of DLL3 mRNACTDPMID:24780913
Dll3Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of DLL3 mRNACTDPMID:30047161
Dll3Ratacrylamide decreases expressionISODLL3 (Homo sapiens)6480464Acrylamide results in decreased expression of DLL3 mRNACTDPMID:32763439
Dll3Ratall-trans-retinoic acid decreases expressionISODLL3 (Homo sapiens)6480464Tretinoin results in decreased expression of DLL3 mRNACTDPMID:23724009
Dll3Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of DLL3 mRNACTDPMID:30047161
Dll3Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of DLL3 mRNACTDPMID:16483693
Dll3Ratarsane affects methylationISODLL3 (Homo sapiens)6480464Arsenic affects the methylation of DLL3 geneCTDPMID:25304211
Dll3Ratarsenic atom affects methylationISODLL3 (Homo sapiens)6480464Arsenic affects the methylation of DLL3 geneCTDPMID:25304211
Dll3Ratbenzo[a]pyrene decreases methylationISODLL3 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of DLL3 3' UTR and Benzo(a)pyrene results in decreased methylation of DLL3 5' UTRCTDPMID:27901495
Dll3Ratbeta-lapachone decreases expressionISODLL3 (Homo sapiens)6480464beta-lapachone results in decreased expression of DLL3 mRNACTDPMID:38218311
Dll3Ratbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of DLL3 mRNACTDPMID:25181051
Dll3Ratbisphenol A affects methylationISODLL3 (Homo sapiens)6480464bisphenol A affects the methylation of DLL3 geneCTDPMID:31601247
Dll3Ratbisphenol F increases expressionISODll3 (Mus musculus)6480464bisphenol F results in increased expression of DLL3 mRNACTDPMID:30951980
Dll3Ratcadmium dichloride decreases expressionISODLL3 (Homo sapiens)6480464Cadmium Chloride results in decreased expression of DLL3 mRNACTDPMID:38382870 and PMID:38568856

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Biological Process
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Original Reference(s)
Dll3Ratcell differentiation involved_inIEAUniProtKB-KW:KW-02211600115GO_REF:0000043UniProtGO_REF:0000043
Dll3Ratcell fate determination  TAS 1304491 RGD 
Dll3Ratcompartment pattern specification acts_upstream_of_or_withinISODll3 (Mus musculus)1624291MGI:1857008 PMID:12001066RGDPMID:12001066
Dll3Ratdevelopmental process involved_inIEAARBA:ARBA000287391600115GO_REF:0000117UniProtGO_REF:0000117
Dll3Ratnegative regulation of astrocyte differentiation  IDA 1599776 RGD 
Dll3Ratnegative regulation of neurogenesis acts_upstream_of_or_withinISODll3 (Mus musculus)1624291 PMID:9272948RGDPMID:9272948
Dll3Ratnegative regulation of Notch signaling pathway  IDA 1599776 RGD 
Dll3Ratnegative regulation of Notch signaling pathway involved_inIBAMGI:1859388 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dll3RatNotch signaling pathway involved_inIEAUniProtKB-KW:KW-09141600115GO_REF:0000043UniProtGO_REF:0000043
Dll3RatNotch signaling pathway involved_inIBAFB:FBgn0000463 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dll3RatNotch signaling pathway involved_inIEAInterPro:IPR0116511600115GO_REF:0000002InterProGO_REF:0000002
Dll3Ratparaxial mesoderm development acts_upstream_of_or_withinISODll3 (Mus musculus)1624291MGI:1857008 PMID:15170697RGDPMID:15170697
Dll3Ratpositive regulation of neurogenesis  IDA 1599776 RGD 
Dll3Ratskeletal system development involved_inISSUniProtKB:O885168554121PMID:11923214UniProt 
Dll3Ratskeletal system development involved_inISODll3 (Mus musculus)1624291 PMID:11923214RGDPMID:11923214
Dll3Ratskeletal system development involved_inISODLL3 (Homo sapiens)1624291 PMID:10742114RGDPMID:10742114
Dll3Ratsomitogenesis acts_upstream_of_or_withinISODll3 (Mus musculus)1624291MGI:1857008 PMID:15170697 and PMID:9272948RGDPMID:15170697 and PMID:9272948
Dll3Rattissue development acts_upstream_of_or_withinISODll3 (Mus musculus)1624291 PMID:9272948RGDPMID:9272948
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Cellular Component

  
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Original Reference(s)
Dll3Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Dll3Ratmembrane located_inIEAInterPro:IPR0116511600115GO_REF:0000002InterProGO_REF:0000002
Dll3Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Dll3Ratplasma membrane is_active_inIBAFB:FBgn0000463 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dll3Ratplasma membrane located_inISODll3 (Mus musculus)1624291 PMID:34635817RGDPMID:34635817

Molecular Function

  
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Original Reference(s)
Dll3Ratcalcium ion binding enablesIEAInterPro:IPR0018811600115GO_REF:0000002InterProGO_REF:0000002
Dll3RatNotch binding  TAS 1304491 RGD 
Dll3RatNotch binding enablesIBAFB:FBgn0000463 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dll3RatNotch binding  IPINOTCH1 (Homo sapiens)1599776 RGD 
Dll3Ratprotein binding enablesISODll3 (Mus musculus)1624291PR:A2AFI6 more ...RGDPMID:16000382 and PMID:34635817

RGD Manual Annotations


  
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Original Reference(s)
Dll3Rataltered Notch signaling pathway  ISS 1304493paper mentions mutations and diseases and deletion in miceRGD 
Dll3Rataltered Notch signaling pathway involving the main players  ISS 1304493 RGD 
Dll3RatNotch signaling pathway   TAS 1304491 RGD 
Dll3RatNotch signaling pathway   ISODLL3 (Homo sapiens)2302204 RGD 

Imported Annotations - KEGG (archival)

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Original Reference(s)
Dll3RatNotch signaling pathway   IEA 6907045 KEGGrno:04330

Imported Annotations - PID (archival)

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Original Reference(s)
Dll3RatNotch signaling pathway   ISODLL3 (Homo sapiens)6484113 PIDPID:200015

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#
Reference Title
Reference Citation
1. Mutations in the human delta homologue, DLL3, cause axial skeletal defects in spondylocostal dysostosis. Bulman MP, etal., Nat Genet. 2000 Apr;24(4):438-41.
2. Axial skeletal defects caused by mutation in the spondylocostal dysplasia/pudgy gene Dll3 are associated with disruption of the segmentation clock within the presomitic mesoderm. Dunwoodie SL, etal., Development. 2002 Apr;129(7):1795-806.
3. Cell and molecular biology of Notch. Fiuza UM and Arias AM, J Endocrinol. 2007 Sep;194(3):459-74.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Patterns of Jagged1, Jagged2, Delta-like 1 and Delta-like 3 expression during late embryonic and postnatal brain development suggest multiple functional roles in progenitors and differentiated cells. Irvin DK, etal., J Neurosci Res 2004 Feb 1;75(3):330-43.
7. The divergent DSL ligand Dll3 does not activate Notch signaling but cell autonomously attenuates signaling induced by other DSL ligands. Ladi E, etal., J Cell Biol. 2005 Sep 12;170(6):983-92. Epub 2005 Sep 6.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Comprehensive gene review and curation RGD comprehensive gene curation
17. Information Derived from GenBank Report RGD, Sept. 2003
18. Diverse requirements for Notch signalling in mammals. Sparrow DB, etal., Int J Dev Biol 2002;46(4):365-74.
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PMID:9272948   PMID:12001066   PMID:15170697  



Dll3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,689,577 - 92,698,125 (-)NCBIGRCr8
mRatBN7.2183,562,011 - 83,570,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,562,014 - 83,569,750 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,973,668 - 88,982,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,431,999 - 97,440,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,729,526 - 90,737,881 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,485,875 - 85,493,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,485,289 - 85,493,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,697,034 - 86,704,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,373,482 - 83,381,219 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1183,451,593 - 83,459,330 (-)NCBI
Celera177,961,035 - 77,968,719 (-)NCBICelera
Cytogenetic Map1q21NCBI
DLL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,498,947 - 39,508,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,498,895 - 39,508,481 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,989,587 - 39,999,109 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,681,427 - 44,690,949 (+)NCBINCBI36Build 36hg18NCBI36
Build 341944,681,426 - 44,690,948NCBI
Celera1936,791,266 - 36,800,828 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,435,871 - 36,445,452 (+)NCBIHuRef
CHM1_11939,990,197 - 39,999,736 (+)NCBICHM1_1
T2T-CHM13v2.01942,303,204 - 42,312,726 (+)NCBIT2T-CHM13v2.0
Dll3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,992,980 - 28,001,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,992,978 - 28,001,663 (-)EnsemblGRCm39 Ensembl
GRCm38728,293,555 - 28,301,785 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,293,553 - 28,302,238 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,078,574 - 29,086,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,002,336 - 28,010,544 (-)NCBIMGSCv36mm8
Celera722,855,195 - 22,863,426 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map716.67NCBI
Dll3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546871,004 - 78,827 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546870,714 - 78,831 (-)NCBIChiLan1.0ChiLan1.0
DLL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,794,577 - 45,804,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,665,162 - 47,674,775 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,597,420 - 36,607,021 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,144,641 - 45,154,854 (+)NCBIpanpan1.1PanPan1.1panPan2
DLL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,737,662 - 113,745,936 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,141,459 - 113,149,451 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,338,412 - 114,346,404 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,338,408 - 114,346,328 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,897,659 - 113,905,662 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,530,679 - 113,538,682 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,525,073 - 114,533,065 (-)NCBIUU_Cfam_GSD_1.0
Dll3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,893,682 - 13,904,131 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,322,531 - 2,329,953 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,322,531 - 2,330,150 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,147,635 - 48,155,292 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,135,738 - 48,155,373 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,998,228 - 44,008,477 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DLL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,102,433 - 34,114,558 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl634,103,854 - 34,114,103 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607312,125,291 - 12,136,981 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dll3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,806,868 - 12,815,582 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479412,806,299 - 12,816,048 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Dll3
65 total Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 86700261 86700262 G A snv DOB/Oda (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:150
Interacting mature miRNAs:165
Transcripts:ENSRNOT00000026182
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 38 rows
RH140770  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,562,752 - 83,562,904 (-)MAPPERmRatBN7.2
Rnor_6.0185,492,792 - 85,492,943NCBIRnor6.0
Rnor_5.0186,703,935 - 86,704,086UniSTSRnor5.0
RGSC_v3.4183,374,222 - 83,374,373UniSTSRGSC3.4
Celera177,961,775 - 77,961,926UniSTS
Cytogenetic Map1q21UniSTS
RH141257  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8192,689,697 - 92,690,157 (+)Marker Load Pipeline
mRatBN7.2183,562,133 - 83,562,593 (-)MAPPERmRatBN7.2
Rnor_6.0185,493,103 - 85,493,562NCBIRnor6.0
Rnor_5.0186,704,246 - 86,704,705UniSTSRnor5.0
RGSC_v3.4183,373,603 - 83,374,062UniSTSRGSC3.4
Celera177,961,156 - 77,961,615UniSTS
RH 3.4 Map1839.2UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 33 113 63 62 31 25 31 6 153 81 93 24 59 31



Ensembl Acc Id: ENSRNOT00000026182   ⟹   ENSRNOP00000026182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,562,014 - 83,569,750 (-)Ensembl
Rnor_6.0 Ensembl185,485,289 - 85,493,685 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl185,490,587 - 85,491,231 (+)Ensembl
RefSeq Acc Id: NM_053666   ⟹   NP_446118
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,689,577 - 92,697,316 (-)NCBI
mRatBN7.2183,562,013 - 83,569,750 (-)NCBI
Rnor_6.0185,485,945 - 85,493,683 (+)NCBI
Rnor_5.0186,697,034 - 86,704,826 (+)NCBI
RGSC_v3.4183,373,482 - 83,381,219 (-)RGD
Celera177,961,035 - 77,968,719 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228611   ⟹   XP_006228673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,689,577 - 92,698,125 (-)NCBI
mRatBN7.2183,562,011 - 83,570,008 (-)NCBI
Rnor_6.0185,485,875 - 85,493,683 (+)NCBI
Rnor_5.0186,697,034 - 86,704,826 (+)NCBI
Sequence:
Protein RefSeqs NP_446118 (Get FASTA)   NCBI Sequence Viewer  
  XP_006228673 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC33303 (Get FASTA)   NCBI Sequence Viewer  
  EDM07908 (Get FASTA)   NCBI Sequence Viewer  
  EDM07909 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026182
GenBank Protein O88671 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446118   ⟸   NM_053666
- Peptide Label: precursor
- UniProtKB: O88671 (UniProtKB/Swiss-Prot),   F1M9P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228673   ⟸   XM_006228611
- Peptide Label: isoform X1
- UniProtKB: O88671 (UniProtKB/Swiss-Prot),   A6J9H5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026182   ⟸   ENSRNOT00000026182
DSL   EGF-like

Name Modeler Protein Id AA Range Protein Structure
AF-O88671-F1-model_v2 AlphaFold O88671 1-589 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60257 BioCyc
Ensembl Genes ENSRNOG00000019338 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000026182 ENTREZGENE
Gene3D-CATH 2.60.40.3510 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_CS UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  Notch_ligand_N UniProtKB/Swiss-Prot
KEGG Report rno:114125 UniProtKB/Swiss-Prot
NCBI Gene 114125 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 UniProtKB/Swiss-Prot
  UNINFLATABLE, ISOFORM C UniProtKB/Swiss-Prot
Pfam EGF UniProtKB/Swiss-Prot
  hEGF UniProtKB/Swiss-Prot
  MNNL UniProtKB/Swiss-Prot
PhenoGen Dll3 PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019338 RatGTEx
SMART EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
UniProt A6J9H5 ENTREZGENE, UniProtKB/TrEMBL
  A6J9H6_RAT UniProtKB/TrEMBL
  DLL3_RAT UniProtKB/Swiss-Prot
  F1M9P5 ENTREZGENE, UniProtKB/TrEMBL
  O88671 ENTREZGENE
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-20 Dll3  delta like canonical Notch ligand 3  Dll3  delta-like 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Dll3  delta-like 3 (Drosophila)      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

Note Type Note Reference
gene_expression expressed in the proliferative EGL (external granule layer) of the brain during the first week of postnatal development, possibly suggesting communication between adjacent Dll3-expressing and Notch2-expressing cells 1304491
gene_expression expressed in sparsely distributed cells within the ventricular germinal zones during the late embryonic stage and at relatively very low levels during the first week postnatal 1304491