Trpv6 (transient receptor potential cation channel, subfamily V, member 6) - Rat Genome Database

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Gene: Trpv6 (transient receptor potential cation channel, subfamily V, member 6) Rattus norvegicus
Analyze
Symbol: Trpv6
Name: transient receptor potential cation channel, subfamily V, member 6
RGD ID: 69335
Description: Enables calcium channel activity and identical protein binding activity. Involved in calcium ion import across plasma membrane and protein homotetramerization. Predicted to be located in apical plasma membrane. Predicted to be part of calcium channel complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in hyperparathyroidism. Orthologous to human TRPV6 (transient receptor potential cation channel subfamily V member 6); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium transport protein 1; CaT1; Ecac2; epithelial apical membrane calcium transporter/channel CaT1; epithelial calcium channel 2; osmosensitive transient receptor potential channel 3; Otrpc3; transient receptor potential cation channel subfamily V member 6; transient receptor potential cation channel, subfamily 5, member 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8471,474,006 - 71,489,667 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl471,474,007 - 71,489,671 (-)EnsemblGRCr8
mRatBN7.2470,507,347 - 70,523,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl470,507,348 - 70,523,017 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx475,424,871 - 75,440,482 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,338,124 - 71,353,735 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0469,746,459 - 69,762,055 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0470,918,631 - 70,934,291 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,918,632 - 70,934,295 (-)Ensemblrn6Rnor6.0
Rnor_5.04135,705,692 - 135,721,356 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4469,331,973 - 69,347,633 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera465,472,398 - 65,488,058 (-)NCBICelera
RGSC_v3.1469,608,103 - 69,623,760 (-)NCBI
Cytogenetic Map4q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alfacalcidol  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
Azoxymethane  (ISO)
barium(0)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
Calphostin C  (ISO)
capsaicin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
curcumin  (ISO)
dextran sulfate  (ISO)
dimethylarsinic acid  (ISO)
endosulfan  (ISO)
ethylparaben  (ISO)
flavonoids  (EXP)
formononetin  (ISO)
fulvestrant  (ISO)
furosemide  (ISO)
gadolinium atom  (ISO)
gentamycin  (EXP,ISO)
lanthanum atom  (ISO)
lithocholic acid  (EXP,ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
mercaptopurine  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methylarsonic acid  (ISO)
naled  (ISO)
okadaic acid  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP)
purine-6-thiol  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
streptozocin  (ISO)
strontium atom  (ISO)
tamoxifen  (ISO)
tebuconazole  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The recombinant human TRPV6 channel functions as Ca2+ sensor in human embryonic kidney and rat basophilic leukemia cells. Bodding M, etal., J Biol Chem 2002 Sep 27;277(39):36656-64.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Molecular cloning and characterization of a channel-like transporter mediating intestinal calcium absorption. Peng JB, etal., J Biol Chem 1999 Aug 6;274(32):22739-46.
7. A rat kidney-specific calcium transporter in the distal nephron. Peng JB, etal., J Biol Chem 2000 Sep 8;275(36):28186-94.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Crystal structure of the epithelial calcium channel TRPV6. Saotome K, etal., Nature. 2016 Jun 13;534(7608):506-11. doi: 10.1038/nature17975.
12. Store depletion-activated CaT1 currents in rat basophilic leukemia mast cells are inhibited by 2-aminoethoxydiphenyl borate. Evidence for a regulatory component that controls activation of both CaT1 and CRAC (Ca(2+) release-activated Ca(2+) channel) channels. Schindl R, etal., J Biol Chem 2002 Jul 26;277(30):26950-8.
13. Disrupted placental vitamin D metabolism and calcium signaling in gestational diabetes and pre-eclampsia patients. Varshney S, etal., Endocrine. 2023 Apr;80(1):191-200. doi: 10.1007/s12020-022-03272-9. Epub 2022 Dec 8.
14. International Union of Basic and Clinical Pharmacology. LXXVI. Current progress in the mammalian TRP ion channel family. Wu LJ, etal., Pharmacol Rev. 2010 Sep;62(3):381-404. doi: 10.1124/pr.110.002725.
Additional References at PubMed
PMID:11097838   PMID:11278579   PMID:11287959   PMID:12077127   PMID:12574114   PMID:12620887   PMID:15184369   PMID:16825604   PMID:17129178   PMID:17234578   PMID:19056662   PMID:19457270  
PMID:22878123   PMID:23376485   PMID:23612980   PMID:26384871   PMID:27481714   PMID:28063212   PMID:29505720   PMID:29861107  


Genomics

Comparative Map Data
Trpv6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8471,474,006 - 71,489,667 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl471,474,007 - 71,489,671 (-)EnsemblGRCr8
mRatBN7.2470,507,347 - 70,523,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl470,507,348 - 70,523,017 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx475,424,871 - 75,440,482 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,338,124 - 71,353,735 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0469,746,459 - 69,762,055 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0470,918,631 - 70,934,291 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,918,632 - 70,934,295 (-)Ensemblrn6Rnor6.0
Rnor_5.04135,705,692 - 135,721,356 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4469,331,973 - 69,347,633 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera465,472,398 - 65,488,058 (-)NCBICelera
RGSC_v3.1469,608,103 - 69,623,760 (-)NCBI
Cytogenetic Map4q23NCBI
TRPV6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,871,208 - 142,885,745 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,871,208 - 142,885,745 (-)Ensemblhg38GRCh38
GRCh377142,568,961 - 142,583,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,279,082 - 142,293,599 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347142,085,796 - 142,100,314NCBI
Celera7137,406,262 - 137,420,596 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,907,167 - 136,921,549 (-)NCBIHuRef
CHM1_17142,505,175 - 142,519,717 (-)NCBICHM1_1
T2T-CHM13v2.07144,227,023 - 144,241,552 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27141,970,820 - 141,985,355 (-)NCBI
Trpv6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,597,553 - 41,613,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,597,558 - 41,613,339 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38641,620,619 - 41,636,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,620,624 - 41,636,405 (-)Ensemblmm10GRCm38
MGSCv37641,570,618 - 41,586,404 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36641,550,232 - 41,565,942 (-)NCBIMGSCv36mm8
Celera641,573,210 - 41,588,993 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map619.79NCBI
Trpv6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494818,643 - 836,126 (-)Ensembl
ChiLan1.0NW_004955494820,801 - 835,931 (-)NCBIChiLan1.0ChiLan1.0
LOC100990398
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26179,719,619 - 179,734,609 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1731,729,875 - 31,744,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07134,862,223 - 134,877,051 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,353,684 - 147,368,475 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,353,684 - 147,368,475 (-)EnsemblpanPan2panpan1.1
TRPV6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,691,521 - 6,706,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,691,254 - 6,706,207 (+)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.0166,602,597 - 6,617,275 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,602,330 - 6,617,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,555,020 - 6,570,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,407,357 - 6,422,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,466,102 - 6,480,792 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trpv6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,543,552 - 12,558,192 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527345,626 - 359,942 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936527345,237 - 359,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl187,332,222 - 7,348,381 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1187,332,253 - 7,348,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,626,724 - 7,652,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPV6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121111,750,821 - 111,766,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21111,750,945 - 111,765,450 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660728,474,129 - 8,489,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480012,074,999 - 12,090,049 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480012,074,997 - 12,090,141 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Trpv6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1698,976,937 - 98,992,516 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trpv6
168 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:61
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000020616
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46796011273752811Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat

Markers in Region
RH129621  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2470,507,017 - 70,507,219 (+)MAPPERmRatBN7.2
Rnor_6.0470,918,302 - 70,918,503NCBIRnor6.0
Rnor_5.04135,705,367 - 135,705,568UniSTSRnor5.0
RGSC_v3.4469,331,644 - 69,331,845UniSTSRGSC3.4
Celera465,472,069 - 65,472,270UniSTS
RH 3.4 Map4419.81UniSTS
Cytogenetic Map4q22UniSTS
AI412357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2470,509,277 - 70,509,441 (+)MAPPERmRatBN7.2
Rnor_6.0470,920,562 - 70,920,725NCBIRnor6.0
Rnor_5.04135,707,627 - 135,707,790UniSTSRnor5.0
RGSC_v3.4469,333,904 - 69,334,067UniSTSRGSC3.4
Celera465,474,329 - 65,474,492UniSTS
RH 3.4 Map4419.61UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 25 85 52 51 21 87 21 6 255 135 7 68 75 89 30 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000020616   ⟹   ENSRNOP00000020616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl471,474,007 - 71,489,671 (-)Ensembl
mRatBN7.2 Ensembl470,507,348 - 70,523,017 (-)Ensembl
Rnor_6.0 Ensembl470,918,632 - 70,934,295 (-)Ensembl
RefSeq Acc Id: NM_053686   ⟹   NP_446138
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8471,474,006 - 71,489,667 (-)NCBI
mRatBN7.2470,507,347 - 70,523,013 (-)NCBI
Rnor_6.0470,918,631 - 70,934,291 (-)NCBI
Rnor_5.04135,705,692 - 135,721,356 (-)NCBI
RGSC_v3.4469,331,973 - 69,347,633 (-)RGD
Celera465,472,398 - 65,488,058 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446138 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD47636 (Get FASTA)   NCBI Sequence Viewer  
  BAH03203 (Get FASTA)   NCBI Sequence Viewer  
  EDM15484 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020616
GenBank Protein Q9R186 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446138   ⟸   NM_053686
- UniProtKB: Q9R186 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020616   ⟸   ENSRNOT00000020616
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R186-F1-model_v2 AlphaFold Q9R186 1-767 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693003
Promoter ID:EPDNEW_R3526
Type:multiple initiation site
Name:Trpv6_1
Description:transient receptor potential cation channel, subfamily V, member6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0470,934,223 - 70,934,283EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69335 AgrOrtholog
BioCyc Gene G2FUF-45109 BioCyc
Ensembl Genes ENSRNOG00000014714 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000020616 ENTREZGENE
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot
  TRPV UniProtKB/Swiss-Prot
  TRPV5/TRPV6 UniProtKB/Swiss-Prot
  TRPV6_channel UniProtKB/Swiss-Prot
KEGG Report rno:114246 UniProtKB/Swiss-Prot
NCBI Gene Trpv6 ENTREZGENE
PANTHER PTHR10582 UniProtKB/Swiss-Prot
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V MEMBER 6 UniProtKB/Swiss-Prot
Pfam Ank_2 UniProtKB/Swiss-Prot
  Ion_trans UniProtKB/Swiss-Prot
PhenoGen Trpv6 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot
  ECACCHANNEL UniProtKB/Swiss-Prot
  ECACCHANNEL1 UniProtKB/Swiss-Prot
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014714 RatGTEx
SMART ANK UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot
UniProt A6IF47_RAT UniProtKB/TrEMBL
  B6ZDS2_RAT UniProtKB/TrEMBL
  G3V7Y1_RAT UniProtKB/TrEMBL
  Q6TU30_RAT UniProtKB/TrEMBL
  Q9R186 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Trpv6  transient receptor potential cation channel, subfamily V, member 6      Symbol and Name updated 629477 APPROVED
2003-03-19 Trpv6  transient receptor potential cation channel, subfamily V, member 6  Ecac2  epithelial apical membrane calcium transporter/channel CaT1  Data merged from RGD:620637 628472 PROVISIONAL
2002-08-07 Ecac2  epithelial apical membrane calcium transporter/channel CaT1      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Trpv6  transient receptor potential cation channel, subfamily 5, member 6      Name updated 70584 APPROVED
2002-02-27 Ecac2  epithelial calcium channel 2      Symbol and Name updated to reflect Human and Mouse nomenclature 70292 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation activated following Ca2+ store depletion 634426