Trpv6 (transient receptor potential cation channel, subfamily V, member 6) - Rat Genome Database

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Gene: Trpv6 (transient receptor potential cation channel, subfamily V, member 6) Mus musculus
Analyze
Symbol: Trpv6
Name: transient receptor potential cation channel, subfamily V, member 6
RGD ID: 735419
MGI Page MGI
Description: Enables calcium channel activity and identical protein binding activity. Involved in calcium ion homeostasis; calcium ion import across plasma membrane; and response to calcium ion. Acts upstream of or within calcium ion transport and parathyroid hormone secretion. Part of calcium channel complex. Is expressed in several structures, including central nervous system; gut; placenta; sensory organ; and submandibular gland primordium. Human ortholog(s) of this gene implicated in hyperparathyroidism. Orthologous to human TRPV6 (transient receptor potential cation channel subfamily V member 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CA; Cac; calcium transport protein 1; CAT; CaT1; Ecac; Ecac2; epithelial calcium channel 2; osmosensitive transient receptor potential channel 3; Otrpc3; transient receptor potential cation channel subfamily V member 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,597,553 - 41,613,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,597,558 - 41,613,339 (-)EnsemblGRCm39 Ensembl
GRCm38641,620,619 - 41,636,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,620,624 - 41,636,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv37641,570,618 - 41,586,404 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36641,550,232 - 41,565,942 (-)NCBIMGSCv36mm8
Celera641,573,210 - 41,588,993 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map619.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,7-dihydropurine-6-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alfacalcidol  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
barium(0)  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
calciol  (ISO)
calcitriol  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
Calphostin C  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
chlorpyrifos  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (ISO)
dextran sulfate  (EXP)
dimethylarsinic acid  (EXP)
endosulfan  (ISO)
ethylparaben  (ISO)
flavonoids  (ISO)
formononetin  (EXP)
fulvestrant  (EXP,ISO)
furosemide  (EXP)
gadolinium atom  (ISO)
gentamycin  (EXP,ISO)
lanthanum atom  (ISO)
lithocholic acid  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
mercaptopurine  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methylarsonic acid  (EXP)
p-tert-Amylphenol  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
potassium dichromate  (EXP)
progesterone  (ISO)
purine-6-thiol  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP,ISO)
streptozocin  (EXP)
strontium atom  (ISO)
tamoxifen  (ISO)
tebuconazole  (ISO)
testosterone  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triclosan  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Disrupted placental vitamin D metabolism and calcium signaling in gestational diabetes and pre-eclampsia patients. Varshney S, etal., Endocrine. 2023 Apr;80(1):191-200. doi: 10.1007/s12020-022-03272-9. Epub 2022 Dec 8.
8. International Union of Basic and Clinical Pharmacology. LXXVI. Current progress in the mammalian TRP ion channel family. Wu LJ, etal., Pharmacol Rev. 2010 Sep;62(3):381-404. doi: 10.1124/pr.110.002725.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11097838   PMID:11217851   PMID:11744752   PMID:12077127   PMID:12477932   PMID:12574114   PMID:12601087   PMID:12620887   PMID:12660155  
PMID:12765696   PMID:12933662   PMID:14584880   PMID:14736889   PMID:15123711   PMID:15489334   PMID:15741244   PMID:16141072   PMID:16141073   PMID:16354700   PMID:16380433   PMID:16460286  
PMID:16565876   PMID:16602821   PMID:16705151   PMID:16901990   PMID:17129178   PMID:17200157   PMID:17374692   PMID:17645868   PMID:18005662   PMID:18054826   PMID:18232717   PMID:18258656  
PMID:18325990   PMID:18348695   PMID:18390907   PMID:19073913   PMID:19322198   PMID:19457270   PMID:19834762   PMID:19922080   PMID:19968565   PMID:20059953   PMID:20133672   PMID:20347977  
PMID:20399919   PMID:20508153   PMID:21267068   PMID:21540454   PMID:21732366   PMID:21873635   PMID:22163264   PMID:22266179   PMID:22407925   PMID:22427671   PMID:22589201   PMID:22878123  
PMID:23612980   PMID:23895994   PMID:24428817   PMID:24686448   PMID:24691093   PMID:25041756   PMID:25372600   PMID:26186712   PMID:28039038   PMID:28063212   PMID:28458019   PMID:29515374  
PMID:30786075   PMID:30916584   PMID:31013259   PMID:31398491   PMID:31930989   PMID:32980687   PMID:33159483   PMID:33859252   PMID:33884443   PMID:34578445   PMID:34628109   PMID:35705057  
PMID:36817471  


Genomics

Comparative Map Data
Trpv6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,597,553 - 41,613,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,597,558 - 41,613,339 (-)EnsemblGRCm39 Ensembl
GRCm38641,620,619 - 41,636,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,620,624 - 41,636,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv37641,570,618 - 41,586,404 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36641,550,232 - 41,565,942 (-)NCBIMGSCv36mm8
Celera641,573,210 - 41,588,993 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map619.79NCBI
TRPV6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,871,208 - 142,885,745 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,871,208 - 142,885,745 (-)EnsemblGRCh38hg38GRCh38
GRCh377142,568,961 - 142,583,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,279,082 - 142,293,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 347142,085,796 - 142,100,314NCBI
Celera7137,406,262 - 137,420,596 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,907,167 - 136,921,549 (-)NCBIHuRef
CHM1_17142,505,175 - 142,519,717 (-)NCBICHM1_1
T2T-CHM13v2.07144,227,023 - 144,241,552 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27141,970,820 - 141,985,355 (-)NCBI
Trpv6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8471,474,006 - 71,489,667 (-)NCBIGRCr8
mRatBN7.2470,507,347 - 70,523,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl470,507,348 - 70,523,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx475,424,871 - 75,440,482 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,338,124 - 71,353,735 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0469,746,459 - 69,762,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0470,918,631 - 70,934,291 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,918,632 - 70,934,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04135,705,692 - 135,721,356 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4469,331,973 - 69,347,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1469,608,103 - 69,623,760 (-)NCBI
Celera465,472,398 - 65,488,058 (-)NCBICelera
Cytogenetic Map4q23NCBI
Trpv6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494818,643 - 836,126 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494820,801 - 835,931 (-)NCBIChiLan1.0ChiLan1.0
LOC100990398
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26179,719,619 - 179,734,609 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1731,729,875 - 31,744,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07134,862,223 - 134,877,051 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,353,684 - 147,368,475 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,353,684 - 147,368,475 (-)Ensemblpanpan1.1panPan2
TRPV6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,691,521 - 6,706,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,691,254 - 6,706,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0166,602,597 - 6,617,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,602,330 - 6,617,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,555,020 - 6,570,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,407,357 - 6,422,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,466,102 - 6,480,792 (+)NCBIUU_Cfam_GSD_1.0
Trpv6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,543,552 - 12,558,192 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527345,626 - 359,942 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527345,237 - 359,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121111,750,821 - 111,766,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21111,750,945 - 111,765,450 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660728,474,129 - 8,489,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480012,074,999 - 12,090,049 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480012,074,997 - 12,090,141 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpv6
434 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:463
Count of miRNA genes:313
Interacting mature miRNAs:348
Transcripts:ENSMUST00000031902
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse

Markers in Region
BB111090  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,620,661 - 41,620,775UniSTSGRCm38
MGSCv37641,570,660 - 41,570,774UniSTSGRCm37
Celera641,573,252 - 41,573,366UniSTS
Cytogenetic Map6B2UniSTS
Cytogenetic Map6B2.1UniSTS
Whitehead/MRC_RH6342.82UniSTS
mHAa31g5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,622,502 - 41,622,692UniSTSGRCm38
MGSCv37641,572,501 - 41,572,691UniSTSGRCm37
Celera641,575,093 - 41,575,283UniSTS
Cytogenetic Map6B2UniSTS
Whitehead_YAC6 UniSTS
L77867  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,620,365 - 41,620,468UniSTSGRCm38
MGSCv37641,570,364 - 41,570,467UniSTSGRCm37
Celera641,572,956 - 41,573,059UniSTS
Cytogenetic Map6B2.1UniSTS
Cytogenetic Map6B2UniSTS
Whitehead/MRC_RH6342.82UniSTS
Ephb6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,620,306 - 41,620,426UniSTSGRCm38
MGSCv37641,570,305 - 41,570,425UniSTSGRCm37
Celera641,572,897 - 41,573,017UniSTS
Cytogenetic Map6B2UniSTS
Cytogenetic Map6B2.1UniSTS
cM Map6 UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000031902   ⟹   ENSMUSP00000031902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,597,558 - 41,613,339 (-)Ensembl
GRCm38.p6 Ensembl641,620,624 - 41,636,405 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194405
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,600,426 - 41,613,314 (-)Ensembl
GRCm38.p6 Ensembl641,623,492 - 41,636,380 (-)Ensembl
RefSeq Acc Id: NM_022413   ⟹   NP_071858
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39641,597,553 - 41,613,339 (-)NCBI
GRCm38641,620,619 - 41,636,405 (-)NCBI
MGSCv37641,570,618 - 41,586,404 (-)RGD
Celera641,573,210 - 41,588,993 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_071858   ⟸   NM_022413
- UniProtKB: Q91WD2 (UniProtKB/Swiss-Prot),   A0A0J9YMK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000031902   ⟸   ENSMUST00000031902
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WD2-F1-model_v2 AlphaFold Q91WD2 1-767 view protein structure

Promoters
RGD ID:6889512
Promoter ID:EPDNEW_M8207
Type:initiation region
Name:Trpv6_1
Description:Mus musculus transient receptor potential cation channel, subfamilyV, member 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38641,636,343 - 41,636,403EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927259 AgrOrtholog
Ensembl Genes ENSMUSG00000029868 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031902 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000031902.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV5/TRPV6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV6_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:64177 UniProtKB/Swiss-Prot
MGD MGI:1927259 ENTREZGENE
NCBI Gene 64177 ENTREZGENE
PANTHER PTHR10582 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V MEMBER 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpv6 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ECACCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ECACCHANNEL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YMK6 ENTREZGENE, UniProtKB/TrEMBL
  Q91WD2 ENTREZGENE
  Q9JJJ0_MOUSE UniProtKB/TrEMBL
  TRPV6_MOUSE UniProtKB/Swiss-Prot