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Gene: Atp2b3 (ATPase plasma membrane Ca2+ transporting 3) Rattus norvegicus

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Symbol:

Atp2b3

Name:

ATPase plasma membrane Ca2+ transporting 3

RGD ID:

621304

Description:

Enables PDZ domain binding activity. Involved in neural retina development. Located in parallel fiber. Is active in glutamatergic synapse; parallel fiber to Purkinje cell synapse; and presynaptic membrane. Human ortholog(s) of this gene implicated in X-linked spinocerebellar ataxia 1. Orthologous to human ATP2B3 (ATPase plasma membrane Ca2+ transporting 3); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATPase, Ca++ transporting, plasma membrane 3; plasma membrane calcium ATPase; plasma membrane calcium pump; plasma membrane calcium-transporting ATPase 3; Pmca3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP2B3 (ATPase plasma membrane Ca2+ transporting 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Atp2b3 (ATPase, Ca++ transporting, plasma membrane 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp2b3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP2B3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP2B3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp2b3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP2B3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP2B3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp2b3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Atp2b3 (ATPase plasma membrane Ca2+ transporting 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ATP2B1 (ATPase plasma membrane Ca2+ transporting 1)	HGNC	OrthoDB
Homo sapiens (human):	HDAC2 (histone deacetylase 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ATP2B3 (ATPase plasma membrane Ca2+ transporting 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atp2b3 (ATPase, Ca++ transporting, plasma membrane 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atp2b3a (ATPase plasma membrane Ca2+ transporting 3a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	atp2b3a (ATPase plasma membrane Ca2+ transporting 3a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	atp2b3b (ATPase plasma membrane Ca2+ transporting 3b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PMC1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PMC1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	PMCA	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	PMCA	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mca-1	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mca-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mca-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mca-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mca-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atp2b3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,367,582 - 156,464,085 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	156,367,852 - 156,438,153 (+)	Ensembl				GRCr8
mRatBN7.2	X	151,216,483 - 151,289,069 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,216,507 - 151,286,775 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	153,357,660 - 153,425,705 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,920,896 - 156,988,937 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,592,722 - 154,660,766 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,236,400 - 157,312,028 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,239,306 - 157,312,028 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	152,988,825 - 153,056,732 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	159,400,374 - 159,470,665 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	136,605,191 - 136,673,058 (-)	NCBI		Celera
RGSC_v3.1	X	159,473,827 - 159,544,098 (+)	NCBI
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoma (ISO)

adrenal cortical adenoma (ISO)

Developmental Disabilities (ISO)

fetal akinesia deformation sequence syndrome 1 (ISO)

genetic disease (ISO)

gestational diabetes (ISO)

hypertension (ISO)

Muscle Hypotonia (ISO)

Neurodevelopmental Disorders (ISO)

pre-eclampsia (ISO)

primary hyperaldosteronism (ISO)

spastic ataxia (ISO)

Tremor (IAGP)

X-linked spinocerebellar ataxia 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

ammonium acetate (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

cadmium dichloride (EXP)

CGP 52608 (ISO)

cisplatin (ISO)

clothianidin (ISO)

diazinon (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

ethanol (ISO)

fenvalerate (EXP)

flavonoids (EXP)

fulvestrant (ISO)

graphite (EXP)

lead(0) (ISO)

lycopene (ISO)

malathion (ISO)

methapyrilene (ISO)

methimazole (EXP)

methylmercury chloride (EXP)

monosodium L-glutamate (EXP)

PCB138 (EXP,ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP)

potassium bromate (EXP)

sodium arsenite (EXP)

tebuconazole (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion export across plasma membrane (ISO,ISS)

calcium ion transmembrane transport (IEA)

calcium ion transport (IEA)

monoatomic ion transport (IEA)

neural retina development (IEA,IEP)

regulation of cytosolic calcium ion concentration (IBA,ISO)

regulation of presynaptic cytosolic calcium ion concentration (IEA)

Cellular Component

GABA-ergic synapse (ISO)

glutamatergic synapse (IDA,IEA,ISO)

membrane (IEA)

parallel fiber (IDA)

parallel fiber to Purkinje cell synapse (IDA,IEA)

plasma membrane (IBA,IEA,ISO)

presynaptic membrane (IDA,IEA)

synapse (IEA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

calcium ion transmembrane transporter activity (ISO)

calmodulin binding (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

P-type calcium transporter activity (IBA,IEA)

P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration (ISO)

PDZ domain binding (IEA,IPI)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium transport pathway (ISO)

calcium/calcium-mediated signaling pathway (IEA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

tremors (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression of plasma membrane calcium-pumping ATPase mRNAs in developing rat brain and adult brain subregions: evidence for stage-specific expression.	Brandt P and Neve RL, J Neurochem. 1992 Oct;59(4):1566-9.
2.	Calcium pumps in health and disease.	Brini M and Carafoli E, Physiol Rev. 2009 Oct;89(4):1341-78. doi: 10.1152/physrev.00032.2008.
3.	Perisynaptic organization of plasma membrane calcium pumps in cerebellar cortex.	Burette A and Weinberg RJ, J Comp Neurol. 2007 Feb 20;500(6):1127-35. doi: 10.1002/cne.21237.
4.	Structure of the rat plasma membrane Ca(2+)-ATPase isoform 3 gene and characterization of alternative splicing and transcription products. Skeletal muscle-specific splicing results in a plasma membrane Ca(2+)-ATPase with a novel calmodulin-binding domain.	Burk SE and Shull GE, J Biol Chem 1992 Sep 25;267(27):19683-90.
5.	Spontaneous shaker rat mutant - a new model for X-linked tremor/ataxia.	Figueroa KP, etal., Dis Model Mech. 2016 May 1;9(5):553-62. doi: 10.1242/dmm.022848. Epub 2016 Mar 24.
6.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
8.	Characterization of PISP, a novel single-PDZ protein that binds to all plasma membrane Ca2+-ATPase b-splice variants.	Goellner GM, etal., Ann N Y Acad Sci. 2003 Apr;986:461-71.
9.	Molecular cloning of a third isoform of the calmodulin-sensitive plasma membrane Ca2+-transporting ATPase that is expressed predominantly in brain and skeletal muscle.	Greeb J and Shull GE, J Biol Chem 1989 Nov 5;264(31):18569-76.
10.	Partitioning of the plasma membrane Ca2+-ATPase into lipid rafts in primary neurons: effects of cholesterol depletion.	Jiang L, etal., J Neurochem. 2007 Jul;102(2):378-88.
11.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
12.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
13.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
14.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
15.	Ontogeny of plasma membrane Ca2+ ATPase isoforms in the neural retina of the postnatal rat.	Renteria RC, etal., Vis Neurosci. 2005 May-Jun;22(3):263-74.
16.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
18.	The Homer-1 protein Ania-3 interacts with the plasma membrane calcium pump.	Sgambato-Faure V, etal., Biochem Biophys Res Commun. 2006 May 5;343(2):630-7. Epub 2006 Mar 15.
19.	Disrupted placental vitamin D metabolism and calcium signaling in gestational diabetes and pre-eclampsia patients.	Varshney S, etal., Endocrine. 2023 Apr;80(1):191-200. doi: 10.1007/s12020-022-03272-9. Epub 2022 Dec 8.

Additional References at PubMed

PMID:8428948	PMID:8541282	PMID:12477932	PMID:18029012	PMID:19653992	PMID:21798237	PMID:22871113	PMID:24769233	PMID:25014339	PMID:25276815	PMID:25315779	PMID:28153703
PMID:29476059	PMID:31032369

Genomics

Comparative Map Data

Atp2b3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,367,582 - 156,464,085 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	156,367,852 - 156,438,153 (+)	Ensembl				GRCr8
mRatBN7.2	X	151,216,483 - 151,289,069 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,216,507 - 151,286,775 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	153,357,660 - 153,425,705 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,920,896 - 156,988,937 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,592,722 - 154,660,766 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,236,400 - 157,312,028 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,239,306 - 157,312,028 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	152,988,825 - 153,056,732 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	159,400,374 - 159,470,665 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	136,605,191 - 136,673,058 (-)	NCBI		Celera
RGSC_v3.1	X	159,473,827 - 159,544,098 (+)	NCBI
Cytogenetic Map	X	q37	NCBI

ATP2B3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	153,517,642 - 153,582,929 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	153,517,637 - 153,582,939 (+)	Ensembl			hg38	GRCh38
GRCh37	X	152,783,100 - 152,848,387 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	152,454,774 - 152,501,581 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	152,322,426 - 152,369,234	NCBI
Celera	X	153,035,263 - 153,082,068 (+)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	141,460,036 - 141,506,946 (+)	NCBI		HuRef
CHM1_1	X	152,676,076 - 152,722,878 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	151,791,198 - 151,856,492 (+)	NCBI		T2T-CHM13v2.0

Atp2b3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,546,356 - 72,632,267 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,546,692 - 72,614,611 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	73,502,749 - 73,573,275 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,503,086 - 73,571,005 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	70,748,425 - 70,816,344 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	69,755,806 - 69,823,725 (+)	NCBI		MGSCv36	mm8
Celera	X	64,756,927 - 64,824,859 (+)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.33	NCBI

Atp2b3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955580	269,100 - 333,471 (+)	Ensembl
ChiLan1.0	NW_004955580	286,092 - 332,657 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP2B3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,558,019 - 153,623,332 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,561,623 - 153,626,936 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	143,068,171 - 143,133,479 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	152,955,106 - 153,019,445 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	152,955,109 - 153,019,445 (+)	Ensembl			panPan2	panpan1.1

ATP2B3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	121,355,217 - 121,405,245 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	121,361,239 - 121,403,609 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	106,673,819 - 106,733,766 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	124,485,607 - 124,545,662 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	124,485,472 - 124,547,678 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	120,255,434 - 120,315,368 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	122,770,529 - 122,830,395 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	122,532,564 - 122,592,473 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atp2b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,659,196 - 118,728,749 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936809	396,733 - 466,524 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936809	396,883 - 466,372 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP2B3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	124,301,713 - 124,357,653 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	124,318,874 - 124,357,653 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	141,865,126 - 141,921,057 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP2B3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	127,966,366 - 128,013,900 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	127,966,492 - 128,013,901 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	65,809,624 - 65,875,629 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp2b3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624946	247,168 - 307,663 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624946	247,032 - 307,645 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atp2b3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	129,120,862 - 129,188,485 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	371
Count of miRNA genes:	137
Interacting mature miRNAs:	150
Transcripts:	ENSRNOT00000023934, ENSRNOT00000029079, ENSRNOT00000029091, ENSRNOT00000049237
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	118973754	157758123	Rat

Markers in Region

DXKyo1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	X	156,435,245 - 156,435,480 (+)	Marker Load Pipeline
mRatBN7.2	X	151,283,904 - 151,284,137 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	157,239,713 - 157,239,945	NCBI	Rnor6.0
Rnor_5.0	1	152,989,232 - 152,989,464	UniSTS	Rnor5.0
RGSC_v3.4	X	159,470,026 - 159,470,258	UniSTS	RGSC3.4
Celera	1	136,605,598 - 136,605,830	UniSTS
Cytogenetic Map	X	q37	UniSTS

AW526213

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	151,271,501 - 151,271,652 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	157,252,198 - 157,252,348	NCBI	Rnor6.0
Rnor_5.0	1	153,001,717 - 153,001,867	UniSTS	Rnor5.0
RGSC_v3.4	X	159,457,621 - 159,457,771	UniSTS	RGSC3.4
Celera	1	136,618,083 - 136,618,233	UniSTS
RH 3.4 Map	1	1646.1	UniSTS
Cytogenetic Map	X	q37	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	10	12	92	246	76	75	50	32	44	19	299	163	11	224	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_133288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AH002774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH011206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	J05087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M96626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U29397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077979 ⟹ ENSRNOP00000071471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	156,367,902 - 156,423,017 (+)	Ensembl
mRatBN7.2 Ensembl	X	151,216,507 - 151,273,590 (+)	Ensembl
Rnor_6.0 Ensembl	X	157,239,306 - 157,312,028 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078100 ⟹ ENSRNOP00000075088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	156,367,902 - 156,438,153 (+)	Ensembl
mRatBN7.2 Ensembl	X	151,216,507 - 151,286,775 (+)	Ensembl
Rnor_6.0 Ensembl	X	157,239,926 - 157,286,936 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098998 ⟹ ENSRNOP00000083651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	156,367,852 - 156,435,887 (+)	Ensembl
mRatBN7.2 Ensembl	X	151,216,507 - 151,286,775 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099418 ⟹ ENSRNOP00000094290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	156,367,902 - 156,435,819 (+)	Ensembl
mRatBN7.2 Ensembl	X	151,216,507 - 151,286,775 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115963 ⟹ ENSRNOP00000081864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	156,367,902 - 156,435,819 (+)	Ensembl
mRatBN7.2 Ensembl	X	151,216,507 - 151,286,775 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120993 ⟹ ENSRNOP00000098551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	156,367,902 - 156,436,266 (+)	Ensembl

RefSeq Acc Id:

NM_133288 ⟹ NP_579822

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,852 - 156,435,887 (+)	NCBI
mRatBN7.2	X	151,216,507 - 151,284,544 (+)	NCBI
Rnor_6.0	X	157,239,306 - 157,312,028 (-)	NCBI
Rnor_5.0	1	152,988,825 - 153,056,732 (-)	NCBI
RGSC_v3.4	X	159,400,374 - 159,470,665 (+)	RGD
Celera	1	136,605,191 - 136,673,058 (-)	NCBI

Sequence:

show sequence

CACCACCAGCTCCCTCCCTCCCCCACCCCTTCCTCCCTCCCTCCGCGCTCAGAGCTGCGGCTGG
AGTCGAGCGCGCGCGTCGCCCGCCGCCGCCGGTGCGGAGCGTGGGGAGCACTCGGCCACAGCCC
TCGCCTGGCCGCGGAGGGTCCTGCTCCGCACTGCTGGCCAGGCCGCCCAGTGCCCGGGCCTTTC
CGTCCTTGGAGCGGATCGTTGCTCGCAGGGAGCTCTCCTGCAGCAACAGCGAAAGCTACAGCAG
AGGCCGCGGTGGCGGCTGTGCCCATGCCGGGCAGCCAAGAGTCACTCAAAAGGGCCTCCCCTCA
ACTGATGCCCTCTATCTGTCCTGTGGCCTGTTGGGTGAATGAAGATGAGGAAAGTTTGAGTAGC
CACACCTTCTGGCTTCATGCTGTGCAGGATAGTGCTGCTACCTTCCAGAGCTCCAAGATTTTCC
CCTCTGTGAACCAGGCCTCATTCACTAATTTCTCCAGCCCCATCGTCATCTGGGATAGATCACT
CAGTGCATTTTTGGCAATTCAGTGGTCAACAATGTGTCTCAAAGAGTTAAGGATGCAGGTGTTC
ACACTTAGCTTCTTTCCCACCACCACCTTGCCTCACCTCAGCACTGGGATCATAGGTGGCCACC
CGTCCCTAGCTATTACTGAGCTGAGGCTACACCTGTGAGAAGGCTGACAGACAGGATGGGTGAC
ATGGCGAACAGTTCCATTGAGTTCCACCCCAAACCCCAGCAGCAGCGGGAAGTGCCTCATGTGG
GTGGCTTTGGATGCACGCTGGCAGAACTACGCAGCCTCATGGAGCTCCGAGGTGCTGAGGCACT
GCAGAAGATCCAAGAAGCCTATGGGGATGTCAGTGGGCTGTGTAGGAGACTAAAGACCTCACCT
ACTGAAGGCCTGGCAGACAACACCAATGACTTGGAGAAACGCAGGCAGATCTATGGGCAGAACT
TCATCCCTCCAAAGCAGCCCAAGACCTTCCTGCAGCTGGTGTGGGAAGCCCTGCAGGACGTGAC
TCTCATCATCCTGGAGGTGGCTGCTATCGTCTCCCTGGGCCTCTCCTTCTATGCACCACCTGGA
GAGGAAAGTGAAGCCTGTGGGAATGTGTCTGGTGGGGCAGAAGACGAAGGAGAGGCCGAGGCTG
GCTGGATAGAGGGGGCTGCCATCCTACTCTCTGTCATCTGTGTGGTGCTGGTCACAGCCTTCAA
TGACTGGAGCAAGGAAAAGCAGTTCCGAGGTCTTCAGAGCCGAATTGAGCAGGAACAGAAGTTT
ACTGTCATCCGAAATGGGCAGCTCCTCCAGGTCCCTGTGGCAGCCCTGGTGGTAGGGGACATTG
CCCAGGTCAAATACGGAGATCTTCTGCCTGCCGATGGTGTGCTCATCCAAGGCAATGACCTCAA
GATCGACGAGAGCTCCCTGACCGGCGAGTCGGACCATGTGCGCAAATCAGCAGACAAAGATCCT
ATGCTGCTCTCAGGCACTCATGTCATGGAAGGTTCTGGAAGAATGGTAGTAACAGCTGTTGGTG
TGAACTCCCAGACAGGCATCATCTTTACATTGCTTGGGGCAGGTGGAGAGGAGGAGGAGAAGAA
AGACAAGAAAGCTAAGAAGCAGGATGGGGCTGTTGCCATGGAAATGCAGCCCCTGAAGAGTGCC
GAGGGTGGGGAAATGGAGGAGCGGGAAAAGAAGAAAGCCAACGTACCCAAGAAGGAGAAGTCAG
TCCTGCAAGGGAAGCTCACAAAACTGGCTGTGCAGATTGGGAAAGCAGGATTGGTGATGTCTGC
TATCACTGTCATCATTCTGGTCCTCTACTTTGTGATTGAGACCTTCGTTGTGGATGGCCGGGTG
TGGCTGGCAGAGTGCACACCAGTGTATGTGCAGTACTTTGTGAAGTTTTTCATTATTGGAGTCA
CTGTGTTGGTTGTGGCTGTCCCTGAGGGCCTGCCTCTTGCTGTTACTATCTCCTTGGCTTACTC
TGTTAAGAAAATGATGAAGGACAATAACCTGGTACGCCACCTGGATGCCTGTGAGACCATGGGC
AATGCCACAGCCATCTGTTCTGACAAGACAGGCACACTCACCACCAACCGTATGACAGTGGTTC
AGTCCTACCTAGGAGACACCCACTACAAAGAGATTCCAGCTCCCAGCGCCCTGACCCCCAAGAT
CCTCGACCTTCTGGTTCATGCCATCTCCATCAACAGTGCCTACACCACCAAAATTCTACCTCCA
GAGAAAGAAGGCGCTCTCCCACGCCAAGTGGGCAACAAAACAGAGTGTGCTCTTTTGGGCTTCA
TCTTGGACCTGAAACGTGACTTCCAACCTGTACGGGAACAGATACCAGAAGATCAGCTTTACAA
AGTGTACACCTTCAACTCAGTTCGCAAGTCCATGAGCACAGTTATCCGAATGCCTGATGGTGGC
TTCCGCCTCTTCAGCAAGGGAGCCTCAGAGATCCTGCTCAAAAAGTGTACAAACATCTTAAACA
GCAATGGTGAACTCCGAGGATTTCGTCCTCGGGACCGGGATGACATGGTAAAGAAGATCATTGA
GCCTATGGCTTGTGATGGCCTCCGCACCATATGCATCGCCTACAGGGACTTCTCTGCTATCCAG
GAACCGGACTGGGACAATGAGAATGAGGTGGTGGGTGACCTTACCTGCATAGCTGTCGTGGGCA
TCGAGGACCCTGTGCGACCTGAGGTCCCTGAAGCCATTCGAAAATGCCAGCGTGCTGGCATTAC
AGTCCGTATGGTAACTGGAGATAACATCAACACTGCCCGGGCTATTGCAGCTAAGTGTGGCATC
ATCCAGCCAGGGGAGGATTTCCTGTGCCTGGAGGGGAAGGAATTCAACAGAAGGATTCGAAATG
AGAAAGGCGAGATAGAACAGGAGAGGCTGGACAAGGTGTGGCCCAAGCTTCGGGTGCTTGCCCG
GTCATCTCCCACTGATAAACATACTCTGGTCAAAGGCATAATTGACAGCACAACTGGTGAGCAG
CGGCAGGTGGTGGCTGTGACCGGGGATGGCACCAATGATGGACCAGCCCTCAAAAAGGCAGATG
TGGGCTTCGCCATGGGCATCGCAGGCACTGATGTGGCCAAGGAGGCCTCTGACATCATTCTGAC
TGATGACAACTTCACCAGCATTGTCAAGGCGGTCATGTGGGGCCGCAATGTCTATGACAGCATT
TCCAAGTTCCTGCAGTTTCAGTTGACAGTCAATGTGGTAGCTGTGATCGTGGCCTTCACGGGTG
CCTGCATTACTCAGGACTCTCCTCTCAAAGCTGTGCAGATGTTGTGGGTGAACTTGATCATGGA
CACATTTGCCTCACTTGCCCTGGCAACGGAACCCCCAACTGAGTCACTGCTGCTGCGGAAGCCA
TATGGCCGGGACAAGCCTCTCATCTCACGCACCATGATGAAGAACATCCTTGGACATGCTGTTT
ACCAGCTTACCATCATCTTTACTCTGCTATTTGTTGGAGAGCTTTTCTTTGACATTGACAGTGG
AAGGAATGCACCTCTGCACTCGCCGCCCTCAGAGCACTACACCATCATCTTCAACACATTTGTC
ATGATGCAGCTTTTCAATGAGATCAATGCTCGAAAGATCCATGGTGAGAGGAATGTCTTTGATG
GCATCTTCAGCAACCCCATCTTCTGTACCATTGTCCTGGGCACCTTTGGAATTCAGATTGTCAT
TGTCCAATTTGGAGGGAAGCCCTTCAGCTGTTCCCCACTGTCCACAGAACAGTGGCTCTGGTGT
CTTTTTGTTGGTGTTGGGGAGCTGGTCTGGGGACAGGTCATTGCCACTATCCCCACCAGCCAGC
TCAAGTGCCTGAAGGAAGCAGGGCATGGGCCTGGGAAGGATGAGATGACTGATGAAGAGTTGGC
GGAAGGGGAAGAAGAAATTGACCATGCTGAGCGAGAGCTCCGCAGAGGCCAGATCCTCTGGTTT
CGGGGCCTCAACCGGATCCAGACACAGATGGAGGTAGTGAGTACCTTCAAGAGAAGCGGGTCAT
TTCAGGGTGCTGTGCGCCGGCGGTCTTCGGTCCTCAGCCAGCTCCATGACGTAACCAATCTTTC
TACCCCTACTCACGTAACTCTCTCTGCCGCCAAGCCCACCAGCGCTGCTGGCAATCCGAGTGGT
GAAAGCATTCCGTAGCTCGCTTTATGAAGGCCTGGAGAAACCAGAATCCAAGAGTTGCATCCAT
AACTTCATGGCAACACCCGAGTTTTTGATCAATGACTACACCCACAATATTCCGCTCATCGATG
ACACAGATGTGGATGAGAATGAAGAGCGCCTGAGGGCCCCACCTCCCCCACCCCCTAACCAGAA
CAACAACGCCATAGACAGCGGCATCTACCTGACCACGCATGCCACCAAGTCAGCTACCTCTTCA
GCATTCTCTTCCAGGCCTGGGAGCCCACTCCACAGCATGGAGACATCCCTCTAACCAGAACTTC
TCTCAGTGTGCGCGTGCGCGCGCGCACACACACACACACACACACACACACACACTCTCACACA
CACACACATATTCTCTCTCACACACACACATACACATACATGCATGCATGCACATACATTCTCT
CTCTTTCTCTTACACACACACACACACACACACACACGCGCGCGCGCACAGTCACATGCACCCA
GAGAGGGGAACCCGTGCACCTGCCAAAGAGGGAAATGACTAACATGGCTAAAGACTTTACTTAT
GTGGTATTTGCAAGAAGCCAATTGCATTCAATAAGAGGACAGCCCACTAGGCTTTTTACTAGGT
TCCCAGAAGGTGGGGGAAGGAGAAAAAAGGAAAAGAGAGGGAGGTTCTTTACCCGATGTGAAGG
AAAAAGAGAGCATGAGACAAGATACACTTCCCACCATTTTTCTACTGATGCTTCTTTTTTTAAT
GAACACTAGTTCCACCATGTGTTCACTATTTGGGCTGTGCAATGCGGTAGGGGCTAGCTGAGCC
TATTTGGAGCTTTGCTATACCCATAACAAAAAAAAAGAAAAGAAAAAGAAAGAAAGAGAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAG

hide sequence

RefSeq Acc Id:

XM_008773620 ⟹ XP_008771842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,700 - 156,438,492 (+)	NCBI
mRatBN7.2	X	151,216,487 - 151,289,069 (+)	NCBI
Rnor_6.0	X	157,236,400 - 157,307,197 (-)	NCBI

Sequence:

show sequence

CCCTTCCTCCCTCCCTCCGCGCTCAGAGCTGCGGCTGGAGTCGAGCGCGCAGCGTCGCCCGCCG
CCGCCGGTGCGGAGCGTGGGGAGCACTCGGCCACAGCCCTCGCCTGCCGCGGAGGGTCCTGCTC
CGCACTGCTGGCCAGGCCGCCCAGTGCCCGGGCCTTTCCGTCCTTGGAGCGGATCGTTGCTCGC
AGGGAGCTCTCCTGCAGCAACAGCGAAAGCTACAGCAGAGGCCGCGGTGGCGGCTGTGCCCATG
CCGGGGTGTTCACACTTAGCTTCTTTCCCACCACCACCTTGCCTCACCTCAGCACTGGGATCAT
AGGTGGCCACCCGTCCCTAGCTATTACTGAGCTGAGGCTACACCTGTGAGAAGGCTGACAGACA
GGATGGGTGACATGGCGAACAGTTCCATTGAGTTCCACCCCAAACCCCAGCAGCAGCGGGAAGT
GCCTCATGTGGGTGGCTTTGGATGCACGCTGGCAGAACTACGCAGCCTCATGGAGCTCCGAGGT
GCTGAGGCACTGCAGAAGATCCAAGAAGCCTATGGGGATGTCAGTGGGCTGTGTAGGAGACTAA
AGACCTCACCTACTGAAGGCCTGGCAGACAACACCAATGACTTGGAGAAACGCAGGCAGATCTA
TGGGCAGAACTTCATCCCTCCAAAGCAGCCCAAGACCTTCCTGCAGCTGGTGTGGGAAGCCCTG
CAGGACGTGACTCTCATCATCCTGGAGGTGGCTGCTATCGTCTCCCTGGGCCTCTCCTTCTATG
CACCACCTGGAGAGGAAAGTGAAGCCTGTGGGAATGTGTCTGGTGGGGCAGAAGACGAAGGAGA
GGCCGAGGCTGGCTGGATAGAGGGGGCTGCCATCCTACTCTCTGTCATCTGTGTGGTGCTGGTC
ACAGCCTTCAATGACTGGAGCAAGGAAAAGCAGTTCCGAGGTCTTCAGAGCCGAATTGAGCAGG
AACAGAAGTTTACTGTCATCCGAAATGGGCAGCTCCTCCAGGTCCCTGTGGCAGCCCTGGTGGT
AGGGGACATTGCCCAGGTCAAATACGGAGATCTTCTGCCTGCCGATGGTGTGCTCATCCAAGGC
AATGACCTCAAGATCGACGAGAGCTCCCTGACCGGCGAGTCGGACCATGTGCGCAAATCAGCAG
ACAAAGATCCTATGCTGCTCTCAGGCACTCATGTCATGGAAGGTTCTGGAAGAATGGTAGTAAC
AGCTGTTGGTGTGAACTCCCAGACAGGCATCATCTTTACATTGCTTGGGGCAGGTGGAGAGGAG
GAGGAGAAGAAAGACAAGAAAGCTAAGAAGCAGGATGGGGCTGTTGCCATGGAAATGCAGCCCC
TGAAGAGTGCCGAGGGTGGGGAAATGGAGGAGCGGGAAAAGAAGAAAGCCAACGTACCCAAGAA
GGAGAAGTCAGTCCTGCAAGGGAAGCTCACAAAACTGGCTGTGCAGATTGGGAAAGCAGGATTG
GTGATGTCTGCTATCACTGTCATCATTCTGGTCCTCTACTTTGTGATTGAGACCTTCGTTGTGG
ATGGCCGGGTGTGGCTGGCAGAGTGCACACCAGTGTATGTGCAGTACTTTGTGAAGTTTTTCAT
TATTGGAGTCACTGTGTTGGTTGTGGCTGTCCCTGAGGGCCTGCCTCTTGCTGTTACTATCTCC
TTGGCTTACTCTGTTAAGAAAATGATGAAGGACAATAACCTGGTACGCCACCTGGATGCCTGTG
AGACCATGGGCAATGCCACAGCCATCTGTTCTGACAAGACAGGCACACTCACCACCAACCGTAT
GACAGTGGTTCAGTCCTACCTAGGAGACACCCACTACAAAGAGATTCCAGCTCCCAGCGCCCTG
ACCCCCAAGATCCTCGACCTTCTGGTTCATGCCATCTCCATCAACAGTGCCTACACCACCAAAA
TTCTACCTCCAGAGAAAGAAGGCGCTCTCCCACGCCAAGTGGGCAACAAAACAGAGTGTGCTCT
TTTGGGCTTCATCTTGGACCTGAAACGTGACTTCCAACCTGTACGGGAACAGATACCAGAAGAT
CAGCTTTACAAAGTGTACACCTTCAACTCAGTTCGCAAGTCCATGAGCACAGTTATCCGAATGC
CTGATGGTGGCTTCCGCCTCTTCAGCAAGGGAGCCTCAGAGATCCTGCTCAAAAAGTGTACAAA
CATCTTAAACAGCAATGGTGAACTCCGAGGATTTCGTCCTCGGGACCGGGATGACATGGTAAAG
AAGATCATTGAGCCTATGGCTTGTGATGGCCTCCGCACCATATGCATCGCCTACAGGGACTTCT
CTGCTATCCAGGAACCGGACTGGGACAATGAGAATGAGGTGGTGGGTGACCTTACCTGCATAGC
TGTCGTGGGCATCGAGGACCCTGTGCGACCTGAGGTCCCTGAAGCCATTCGAAAATGCCAGCGT
GCTGGCATTACAGTCCGTATGGTAACTGGAGATAACATCAACACTGCCCGGGCTATTGCAGCTA
AGTGTGGCATCATCCAGCCAGGGGAGGATTTCCTGTGCCTGGAGGGGAAGGAATTCAACAGAAG
GATTCGAAATGAGAAAGGCGAGATAGAACAGGAGAGGCTGGACAAGGTGTGGCCCAAGCTTCGG
GTGCTTGCCCGGTCATCTCCCACTGATAAACATACTCTGGTCAAAGGCATAATTGACAGCACAA
CCGGTGAGCAGCGGCAGGTGGTGGCTGTGACCGGGGATGGCACCAATGATGGACCAGCCCTCAA
AAAGGCAGATGTGGGCTTCGCCATGGGCATCGCAGGCACTGATGTGGCCAAGGAGGCCTCTGAC
ATCATTCTGACTGATGACAACTTCACCAGCATTGTCAAGGCGGTCATGTGGGGCCGCAATGTCT
ATGACAGCATTTCCAAGTTCCTGCAGTTTCAGTTGACAGTCAATGTGGTAGCTGTGATCGTGGC
CTTCACGGGTGCCTGCATTACTCAGGACTCTCCTCTCAAAGCTGTGCAGATGTTGTGGGTGAAC
TTGATCATGGACACATTTGCCTCACTTGCCCTGGCAACGGAACCCCCAACTGAGTCACTGCTGC
TGCGGAAGCCATATGGCCGGGACAAGCCTCTCATCTCACGCACCATGATGAAGAACATCCTTGG
ACATGCTGTTTACCAGCTTACCATCATCTTTACTCTGCTATTTGTTGGAGAGCTTTTCTTTGAC
ATTGACAGTGGAAGGAATGCACCTCTGCACTCGCCGCCCTCAGAGCACTACACCATCATCTTCA
ACACATTTGTCATGATGCAGCTTTTCAATGAGATCAATGCTCGAAAGATCCATGGTGAGAGGAA
TGTCTTTGATGGCATCTTCAGCAACCCCATCTTCTGTACCATTGTCCTGGGCACCTTTGGAATT
CAGATTGTCATTGTCCAATTTGGAGGGAAGCCCTTCAGCTGTTCCCCACTGTCCACAGAACAGT
GGCTCTGGTGTCTTTTTGTTGGTGTTGGGGAGCTGGTCTGGGGACAGGTCATTGCCACTATCCC
CACCAGCCAGCTCAAGTGCCTGAAGGAAGCAGGGCATGGGCCTGGGAAGGATGAGATGACTGAT
GAAGAGTTGGCGGAAGGGGAAGAAGAAATTGACCATGCTGAGCGAGAGCTCCGCAGAGGCCAGA
TCCTCTGGTTTCGGGGCCTCAACCGGATCCAGACACAGATGGAGGTAGTGAGTACCTTCAAGAG
AAGCGGGTCATTTCAGGGTGCTGTGCGCCGGCGGTCTTCGGTCCTCAGCCAGCTCCATGACATC
CGAGTGGTGAAAGCATTCCGTAGCTCGCTTTATGAAGGCCTGGAGAAACCAGAATCCAAGAGTT
GCATCCATAACTTCATGGCAACACCCGAGTTTTTGATCAATGACTACACCCACAATATTCCGCT
CATCGATGACACAGATGTGGATGAGAATGAAGAGCGCCTGAGGGCCCCACCTCCCCCACCCCCT
AACCAGAACAACAACGCCATAGACAGCGGCATCTACCTGACCACGCATGCCACCAAGTCAGCTA
CCTCTTCAGCATTCTCTTCCAGGCCTGGGAGCCCACTCCACAGCATGGAGACATCCCTCTAACC
AGAACTTCTCTCAGTGTGCGCGTGCGCGCGCGCGCACACACACACACACACACACACACACTCT
CACACACACACATATTCTCTCTCACACACACACATACACATACATGCATGCATGCACATACATT
CTCTCTCTTTCTCTTACACACACACACACACACACACACGCGCGCGCGCGCGCGCGCGCGCACA
GTCACATGCACCCAGAGAGGGGAACCCGTGCACCTGCCAAAGAGGGAAATGACTAACATGGCTA
AAGACTTTACTTATGTGGTATTTGCAAGAAGCCAATTGCATTCAATAAGAGGACAGCCCACTAG
GCTTTTTACTAGGTTCCCAGAAGGTGGGGGAAGGAGAAAAAAGGAAAAGAGAGGGAGGTTCTTT
ACCCGATGTGAAGGAAAAAGAGAGCATGAGACAAGATACACTTCCCACCATTTTTCTACTGATG
CTTCTTTTTTTAATGAACACTAGTTCCACCATGTGTTCACTATTTGGGCTGTGCAATGCGGTAG
GGGCTAGCTGAGCCTATTTGGAGCTTTGCTATACCCATAACAAAAAAAAAGAAAAGAAAAAGAA
AGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAAAGAAAAAGTACCAACCAAGAAAGAGGTAGTTGTGCTGACAGGCCACCAGAGGGAGCCA
CCAGTAAAGGTACCTTCTACTGCAACGCACACAAGACCCATCTGCAGACCGCATGTGTGTGCGT
GTGTCTATATGTATGTGTGTGTGTCTATATGCATATACATATATATGGCAAAATTCATATTTAA
AGAATAAGGAACTATTTATTGGCATGATATTTCTATTCTTCTCACCAGGCATTTCCCTTTTGAA
ATTTCATTTTTGAATGTAGTAAGGTTCTTTTCAGGGAACAAGACTGCAAGAACATCCTCTTGGT
ACGGTACTTCCCTCCCAAGCCCCTGACCCGAGGATCTCCATACCTGACCCTGTTGAGATTCCAG
AAGAGGCAGTCTGGGGGGTGTTGTGCAAGGCCTTGCACTTAGAACCTTTGTACTTTAAGACCTC
TACCTGTAGAGTAAGACTTTTCAATGGCATTTTTATTTAAAAGGAAAATACCAAAGTATTGATG
ATAGTGGTCCCCTCCAGTGCGCAGCAAGGCAAGTTTTGGTTTTGGCTTCCTTCCACTTCATTTC
CAACACCTTCACTTTTGGATGGCAGCTTTCTGTTTCCATACTTCAACTTTAAAAATGTGATGAA
CCCTAGGAAGAGCTGTGATGGAACAGAGACAGATGCCAGGCAAGAACAGTCCATGTTCATCACT
GTCATTTCTCTGGACTTGTACTATGTACTTTGGCAAATGACAGCAAGTACTCACTGGATCACCT
CAGTGACTTCGAGGGCATGGGTGTGTCACTCACCAAAGCATGCTTCCAGCCCAGGTCTTCTTGC
CCACAGGGCAAATCCAACCCAGAAGCCAGAACTATAGAAACAAAATATTGTGTGGAAAGTGGCC
CTCTTTCCTGATGCCATTGTTCTTCTCTGGCTGTTGCCTCTTCTGGGCCTGTGGGGACTAAGCA
TGGGGTCAGTCAGCAGGCCTTGGGTCCATCTAGACAAGTAAGACTGGGAAATCTAGGTCTGGGG
ATCCTGAGACATTTTCTTCCAGGAGCCTGTCCCAGCAGTGTGGGCATCCATTGTACCAAGCCTG
CTTTCCTAGAAAGAGTGATAACCTGAGAGAAGGCAGGGGAAAGAGGTCCAATGTCTGCTGCCCT
GCCAGGGAAGCCCAGGCTGACGAATCTCTTCCTAGTGGAAAGCTGACCTTCCTCTATGCTCCTA
GGTCCTGAAACTGGATGCTCACAGTAACAGAGGTGAAATTGGCAACCTTGAGGTTCTTCGCCTT
CTGAACTTATGGATGTCACACTTTTTAGGAAGATGTCTAGAATCTCACTCCACTCCCACATATG
CCTGTCACTTGAGCTCAAGGTTTGTCTGCCTGGAGACATGTGTGAATTGAGAGATGGACAGGAG
CTGCATTTACCCCACTCCCCTCTCACACCACACCACTAAAAGCTTGTCTCAGCTTTCTGGCATC
CACAGAAAGTCAAATGGAAACTTGCTATTTCCACTGGTCACACCAATGCCATGTCACCCCTGAG
CAGGAGTAGTCACATCTCGGGCAAAAGAATTTTGATTACAAGAAAACTCCACTTTAAAATGCCA
GCTACAAATCATATAAAGCCATCCCTTTTTTCTAAAGGGCATATTGAGAATGTTTCCCATTTGT
AAATTGTTCCCTGATGTCCTTGTTTAAACAACCACAGCAAAAGGGCAACTTGGTTTGCTGAGGG
TCTCTGTGTTCTTCAATAATTAATCAAAATGTGGAGTATTGTGACTGAAGCGGGTCAGCTGTGT
CCAGCTATGCTCATGGGCTTCTTGTCATCCTCTGTTGTAGACATACACATAGAGCAAATGGCCA
TTATGTATTAAAAAGCCAACCCTCAATGATGCTGTGTAAAGTTGCCTGATGTCAATGTCAATTG
TGTGATATCCAGGCTGCCTTTGTGCTGAGCTGTGGGGTTCAGAAAAGGCCCTGGGAACCCACAT
CATCTGTTCTGGTTCTTGTACAGTCTTCAGGCCGAGAGACCTGTCTCATCGGAAGCTTCTCTTT
ATAAAGCATTATACTATATGGAATGGCTTGGCCAACTGTGTTCAGTTCATAAATATGTTTTACA
TTTTTATCTGCCTGTTATAAAGATGAACAAAATATCTTAATGAGGAAGAGCGCAGATGAATAAT
AAATTAAAATCTGTAGTTGAATTTCCTAATTTACACAATAGACCAAAATTTTTGTGTATAAAAA
ATGAATGGGTCTGAGTCACATGTATAATTTATTATTTGGTAACTTCCTATGTGGAACCAAACAA
AGGTAATTTGCATGCCATTGAGCCAGGGCAGGAGAAGCCACAGGCATGACCTTCTCTATGCCTG
CTGCCACAATGGATTCTATGGCAAGAAAGAGCACAGACCCTGTTGGCAAGAGATACTCCACCTG
TGCTGCCTCCCAGCAACTGGTTTGACCAGGTAAAACCTGATGAAAATATTCAGGCCACTGTCCT
TGCATGGGGCAGTAGAAGAGTTGTGACAATTCTGTCTTCAGAACTTTTTCAACTTTTCAAATTA
AACTCCATGCCATTTACCACCAACTTCCCACTTCTCTTCCCTAGTCTCCTGTTCTGTTGTCTGT
TAGCTGCAACATTCTCATATAAGGTCTCTCCTAGAAGTAGGATAGAAGTATTTGTCCTTTTATG
ACTGGCTCATTTCACTGAGCATCATGTCCTGAAAGGTCATCCATGCTTTAGCAGGTGTAAACCT
TCAGTTTTTTTTAAGACTGGAAAAGATTTCATGGCTTGCACAGACATGCTGTGATTAGCCACAT
AATCACAAATGCTTGCACTGCTCCCACATTGACATTGTGACTAATGCTACTGTGAACCTGGGTA
CACA

hide sequence

RefSeq Acc Id:

XM_039099540 ⟹ XP_038955468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,628 - 156,438,492 (+)	NCBI
mRatBN7.2	X	151,216,484 - 151,289,069 (+)	NCBI

RefSeq Acc Id:

XM_039099541 ⟹ XP_038955469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,629 - 156,438,492 (+)	NCBI
mRatBN7.2	X	151,216,483 - 151,289,069 (+)	NCBI

RefSeq Acc Id:

XM_039099542 ⟹ XP_038955470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,690 - 156,438,492 (+)	NCBI
mRatBN7.2	X	151,216,484 - 151,289,069 (+)	NCBI

RefSeq Acc Id:

XM_039099543 ⟹ XP_038955471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,694 - 156,438,492 (+)	NCBI
mRatBN7.2	X	151,216,485 - 151,284,488 (+)	NCBI

RefSeq Acc Id:

XM_039099545 ⟹ XP_038955473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,629 - 156,423,041 (+)	NCBI
mRatBN7.2	X	151,216,484 - 151,271,700 (+)	NCBI

RefSeq Acc Id:

XM_039099547 ⟹ XP_038955475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,690 - 156,424,903 (+)	NCBI
mRatBN7.2	X	151,216,485 - 151,273,502 (+)	NCBI

RefSeq Acc Id:

XM_039099549 ⟹ XP_038955477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,691 - 156,421,702 (+)	NCBI
mRatBN7.2	X	151,216,485 - 151,270,361 (+)	NCBI

RefSeq Acc Id:

XM_063279853 ⟹ XP_063135923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,699 - 156,438,492 (+)	NCBI

RefSeq Acc Id:

XM_063279854 ⟹ XP_063135924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,700 - 156,438,492 (+)	NCBI

RefSeq Acc Id:

XM_063279855 ⟹ XP_063135925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,700 - 156,438,492 (+)	NCBI

RefSeq Acc Id:

XM_063279856 ⟹ XP_063135926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,702 - 156,438,492 (+)	NCBI

RefSeq Acc Id:

XM_063279857 ⟹ XP_063135927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,582 - 156,438,492 (+)	NCBI

RefSeq Acc Id:

XM_063279858 ⟹ XP_063135928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,701 - 156,464,085 (+)	NCBI

RefSeq Acc Id:

XM_063279859 ⟹ XP_063135929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,702 - 156,438,492 (+)	NCBI

RefSeq Acc Id:

XM_063279861 ⟹ XP_063135931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,700 - 156,423,041 (+)	NCBI

RefSeq Acc Id:

XM_063279862 ⟹ XP_063135932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,701 - 156,424,903 (+)	NCBI

RefSeq Acc Id:

XM_063279863 ⟹ XP_063135933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,367,701 - 156,421,702 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418501	(Get FASTA)	NCBI Sequence Viewer
	NP_001418502	(Get FASTA)	NCBI Sequence Viewer
	NP_579822	(Get FASTA)	NCBI Sequence Viewer
	XP_008771842	(Get FASTA)	NCBI Sequence Viewer
	XP_038955468	(Get FASTA)	NCBI Sequence Viewer
	XP_038955469	(Get FASTA)	NCBI Sequence Viewer
	XP_038955470	(Get FASTA)	NCBI Sequence Viewer
	XP_038955471	(Get FASTA)	NCBI Sequence Viewer
	XP_038955473	(Get FASTA)	NCBI Sequence Viewer
	XP_038955475	(Get FASTA)	NCBI Sequence Viewer
	XP_038955477	(Get FASTA)	NCBI Sequence Viewer
	XP_063135923	(Get FASTA)	NCBI Sequence Viewer
	XP_063135924	(Get FASTA)	NCBI Sequence Viewer
	XP_063135925	(Get FASTA)	NCBI Sequence Viewer
	XP_063135926	(Get FASTA)	NCBI Sequence Viewer
	XP_063135927	(Get FASTA)	NCBI Sequence Viewer
	XP_063135928	(Get FASTA)	NCBI Sequence Viewer
	XP_063135929	(Get FASTA)	NCBI Sequence Viewer
	XP_063135931	(Get FASTA)	NCBI Sequence Viewer
	XP_063135932	(Get FASTA)	NCBI Sequence Viewer
	XP_063135933	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA50821	(Get FASTA)	NCBI Sequence Viewer
	AAA53650	(Get FASTA)	NCBI Sequence Viewer
	AAA69667	(Get FASTA)	NCBI Sequence Viewer
	AAH89969	(Get FASTA)	NCBI Sequence Viewer
	EDL85044	(Get FASTA)	NCBI Sequence Viewer
	EDL85045	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071471
	ENSRNOP00000075088
	ENSRNOP00000081864
	ENSRNOP00000083651
	ENSRNOP00000083651.1
	ENSRNOP00000098551
GenBank Protein	Q64568	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_579822 ⟸ NM_133288

- UniProtKB:

Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot), A6KRX9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDMANSSIEFHPKPQQQREVPHVGGFGCTLAELRSLMELRGAEALQKIQEAYGDVSGLCRRLK
TSPTEGLADNTNDLEKRRQIYGQNFIPPKQPKTFLQLVWEALQDVTLIILEVAAIVSLGLSFYA
PPGEESEACGNVSGGAEDEGEAEAGWIEGAAILLSVICVVLVTAFNDWSKEKQFRGLQSRIEQE
QKFTVIRNGQLLQVPVAALVVGDIAQVKYGDLLPADGVLIQGNDLKIDESSLTGESDHVRKSAD
KDPMLLSGTHVMEGSGRMVVTAVGVNSQTGIIFTLLGAGGEEEEKKDKKAKKQDGAVAMEMQPL
KSAEGGEMEEREKKKANVPKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFVIETFVVD
GRVWLAECTPVYVQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACE
TMGNATAICSDKTGTLTTNRMTVVQSYLGDTHYKEIPAPSALTPKILDLLVHAISINSAYTTKI
LPPEKEGALPRQVGNKTECALLGFILDLKRDFQPVREQIPEDQLYKVYTFNSVRKSMSTVIRMP
DGGFRLFSKGASEILLKKCTNILNSNGELRGFRPRDRDDMVKKIIEPMACDGLRTICIAYRDFS
AIQEPDWDNENEVVGDLTCIAVVGIEDPVRPEVPEAIRKCQRAGITVRMVTGDNINTARAIAAK
CGIIQPGEDFLCLEGKEFNRRIRNEKGEIEQERLDKVWPKLRVLARSSPTDKHTLVKGIIDSTT
GEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVY
DSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLL
RKPYGRDKPLISRTMMKNILGHAVYQLTIIFTLLFVGELFFDIDSGRNAPLHSPPSEHYTIIFN
TFVMMQLFNEINARKIHGERNVFDGIFSNPIFCTIVLGTFGIQIVIVQFGGKPFSCSPLSTEQW
LWCLFVGVGELVWGQVIATIPTSQLKCLKEAGHGPGKDEMTDEELAEGEEEIDHAERELRRGQI
LWFRGLNRIQTQMEVVSTFKRSGSFQGAVRRRSSVLSQLHDVTNLSTPTHVTLSAAKPTSAAGN
PSGESIP

hide sequence

RefSeq Acc Id:	XP_008771842 ⟸ XM_008773620
- Peptide Label:	isoform X6
- UniProtKB:	Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot), Q64568 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGDMANSSIEFHPKPQQQREVPHVGGFGCTLAELRSLMELRGAEALQKIQEAYGDVSGLCRRLK TSPTEGLADNTNDLEKRRQIYGQNFIPPKQPKTFLQLVWEALQDVTLIILEVAAIVSLGLSFYA PPGEESEACGNVSGGAEDEGEAEAGWIEGAAILLSVICVVLVTAFNDWSKEKQFRGLQSRIEQE QKFTVIRNGQLLQVPVAALVVGDIAQVKYGDLLPADGVLIQGNDLKIDESSLTGESDHVRKSAD KDPMLLSGTHVMEGSGRMVVTAVGVNSQTGIIFTLLGAGGEEEEKKDKKAKKQDGAVAMEMQPL KSAEGGEMEEREKKKANVPKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFVIETFVVD GRVWLAECTPVYVQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACE TMGNATAICSDKTGTLTTNRMTVVQSYLGDTHYKEIPAPSALTPKILDLLVHAISINSAYTTKI LPPEKEGALPRQVGNKTECALLGFILDLKRDFQPVREQIPEDQLYKVYTFNSVRKSMSTVIRMP DGGFRLFSKGASEILLKKCTNILNSNGELRGFRPRDRDDMVKKIIEPMACDGLRTICIAYRDFS AIQEPDWDNENEVVGDLTCIAVVGIEDPVRPEVPEAIRKCQRAGITVRMVTGDNINTARAIAAK CGIIQPGEDFLCLEGKEFNRRIRNEKGEIEQERLDKVWPKLRVLARSSPTDKHTLVKGIIDSTT GEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVY DSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLL RKPYGRDKPLISRTMMKNILGHAVYQLTIIFTLLFVGELFFDIDSGRNAPLHSPPSEHYTIIFN TFVMMQLFNEINARKIHGERNVFDGIFSNPIFCTIVLGTFGIQIVIVQFGGKPFSCSPLSTEQW LWCLFVGVGELVWGQVIATIPTSQLKCLKEAGHGPGKDEMTDEELAEGEEEIDHAERELRRGQI LWFRGLNRIQTQMEVVSTFKRSGSFQGAVRRRSSVLSQLHDIRVVKAFRSSLYEGLEKPESKSC IHNFMATPEFLINDYTHNIPLIDDTDVDENEERLRAPPPPPPNQNNNAIDSGIYLTTHATKSAT SSAFSSRPGSPLHSMETSL hide sequence

Ensembl Acc Id:

ENSRNOP00000071471 ⟸ ENSRNOT00000077979

Ensembl Acc Id:

ENSRNOP00000075088 ⟸ ENSRNOT00000078100

RefSeq Acc Id:	XP_038955469 ⟸ XM_039099541
- Peptide Label:	isoform X2
- UniProtKB:	Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038955468 ⟸ XM_039099540
- Peptide Label:	isoform X1
- UniProtKB:	Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038955470 ⟸ XM_039099542
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZTE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955473 ⟸ XM_039099545
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZTE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955471 ⟸ XM_039099543
- Peptide Label:	isoform X4
- UniProtKB:	Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038955475 ⟸ XM_039099547
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZTE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955477 ⟸ XM_039099549
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZTE0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083651 ⟸ ENSRNOT00000098998

Ensembl Acc Id:

ENSRNOP00000094290 ⟸ ENSRNOT00000099418

Ensembl Acc Id:

ENSRNOP00000081864 ⟸ ENSRNOT00000115963

RefSeq Acc Id:	XP_063135927 ⟸ XM_063279857
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063135923 ⟸ XM_063279853
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063135924 ⟸ XM_063279854
- Peptide Label:	isoform X8
- UniProtKB:	A6KRX8 (UniProtKB/TrEMBL), A0A8I6AKH9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135925 ⟸ XM_063279855
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6AKH9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135931 ⟸ XM_063279861
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I5ZTE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135928 ⟸ XM_063279858
- Peptide Label:	isoform X14
- UniProtKB:	Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063135932 ⟸ XM_063279862
- Peptide Label:	isoform X17
- UniProtKB:	A0A8L2UQ79 (UniProtKB/TrEMBL), A0A8I5ZTE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135933 ⟸ XM_063279863
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I5ZTE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135926 ⟸ XM_063279856
- Peptide Label:	isoform X12
- UniProtKB:	Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063135929 ⟸ XM_063279859
- Peptide Label:	isoform X15
- UniProtKB:	Q64568 (UniProtKB/Swiss-Prot), Q63444 (UniProtKB/Swiss-Prot), Q01489 (UniProtKB/Swiss-Prot), A6KRX9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098551 ⟸ ENSRNOT00000120993

Protein Domains

Cation-transporting P-type ATPase C-terminal Cation-transporting P-type ATPase N-terminal Plasma membrane calcium transporting P-type ATPase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q64568-F1-model_v2	AlphaFold	Q64568	1-1258	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621304	AgrOrtholog
BioCyc Gene	G2FUF-673	BioCyc
Ensembl Genes	ENSRNOG00000061304	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000077979	ENTREZGENE
	ENSRNOT00000078100	ENTREZGENE
	ENSRNOT00000098998	ENTREZGENE
	ENSRNOT00000098998.1	UniProtKB/Swiss-Prot
	ENSRNOT00000115963	ENTREZGENE
	ENSRNOT00000120993	ENTREZGENE
Gene3D-CATH	3.40.1110.10	UniProtKB/Swiss-Prot
	3.40.50.1000	UniProtKB/Swiss-Prot
	Calcium-transporting ATPase, cytoplasmic transduction domain A	UniProtKB/Swiss-Prot
	Calcium-transporting ATPase, transmembrane domain	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7315385	IMAGE-MGC_LOAD
InterPro	ATP_Ca_trans_C	UniProtKB/Swiss-Prot
	ATPase_P-typ_cation-transptr_C	UniProtKB/Swiss-Prot
	ATPase_P-typ_cation-transptr_N	UniProtKB/Swiss-Prot
	ATPase_P-typ_cyto_dom_N	UniProtKB/Swiss-Prot
	ATPase_P-typ_P_site	UniProtKB/Swiss-Prot
	ATPase_P-typ_TM_dom_sf	UniProtKB/Swiss-Prot
	ATPase_P-typ_transduc_dom_A_sf	UniProtKB/Swiss-Prot
	HAD-like_sf	UniProtKB/Swiss-Prot
	HAD_sf	UniProtKB/Swiss-Prot
	P-type_ATPase_IIB	UniProtKB/Swiss-Prot
	P_typ_ATPase	UniProtKB/Swiss-Prot
	P_typ_ATPase_HD_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:29599	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109344	IMAGE-MGC_LOAD
NCBI Gene	29599	ENTREZGENE
PANTHER	CATION TRANSPORTING ATPASE	UniProtKB/Swiss-Prot
	PLASMA MEMBRANE CALCIUM-TRANSPORTING ATPASE 3	UniProtKB/Swiss-Prot
Pfam	ATP_Ca_trans_C	UniProtKB/Swiss-Prot
	Cation_ATPase	UniProtKB/Swiss-Prot
	Cation_ATPase_C	UniProtKB/Swiss-Prot
	Cation_ATPase_N	UniProtKB/Swiss-Prot
	E1-E2_ATPase	UniProtKB/Swiss-Prot
	Hydrolase	UniProtKB/Swiss-Prot
PhenoGen	Atp2b3	PhenoGen
PRINTS	CATATPASE	UniProtKB/Swiss-Prot
PROSITE	ATPASE_E1_E2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000061304	RatGTEx
SMART	Cation_ATPase_N	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56784	UniProtKB/Swiss-Prot
	SSF81653	UniProtKB/Swiss-Prot
	SSF81660	UniProtKB/Swiss-Prot
	SSF81665	UniProtKB/Swiss-Prot
UniProt	A0A0G2K9Q6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZTE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UQ79	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LBT7_RAT	UniProtKB/TrEMBL
	A6KRX8	ENTREZGENE, UniProtKB/TrEMBL
	A6KRX9	ENTREZGENE, UniProtKB/TrEMBL
	AT2B3_RAT	UniProtKB/Swiss-Prot
	Q01489	ENTREZGENE
	Q5EB74_RAT	UniProtKB/TrEMBL
	Q63444	ENTREZGENE
	Q64568	ENTREZGENE
UniProt Secondary	Q01489	UniProtKB/Swiss-Prot
	Q63444	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Atp2b3	ATPase plasma membrane Ca2+ transporting 3	Atp2b3	ATPase, Ca++ transporting, plasma membrane 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-02-26	Atp2b3	ATPase, Ca++ transporting, plasma membrane 3			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Atp2b3	ATPase, Ca++ transporting, plasma membrane 3			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	contains alternate splice products, 4.5 kb transcript in skeletal muscle and 7.5 kb transcript in brain	631862

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Mammalian Phenotype