Atp2b3 (ATPase plasma membrane Ca2+ transporting 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Atp2b3 (ATPase plasma membrane Ca2+ transporting 3) Chinchilla lanigera
Analyze
Symbol: Atp2b3
Name: ATPase plasma membrane Ca2+ transporting 3
RGD ID: 9038957
Description: ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration (ortholog); PDZ domain binding (ortholog); INVOLVED IN calcium ion export across plasma membrane (ortholog); neural retina development (ortholog); regulation of cytosolic calcium ion concentration (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adenoma (ortholog); adrenal cortical adenoma (ortholog); adrenoleukodystrophy (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); parallel fiber (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase, Ca++ transporting, plasma membrane 3; plasma membrane calcium-transporting ATPase 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580269,100 - 333,471 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580286,092 - 332,657 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp2b3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580269,100 - 333,471 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580286,092 - 332,657 (+)NCBIChiLan1.0ChiLan1.0
ATP2B3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,517,642 - 153,582,929 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,517,642 - 153,582,939 (+)EnsemblGRCh38hg38GRCh38
GRCh37X152,783,100 - 152,848,387 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,454,774 - 152,501,581 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X152,322,426 - 152,369,234NCBI
CeleraX153,035,263 - 153,082,068 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,460,036 - 141,506,946 (+)NCBIHuRef
CHM1_1X152,676,076 - 152,722,878 (+)NCBICHM1_1
T2T-CHM13v2.0X151,791,198 - 151,856,492 (+)NCBIT2T-CHM13v2.0
Atp2b3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,546,356 - 72,632,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,546,692 - 72,614,611 (+)EnsemblGRCm39 Ensembl
GRCm38X73,502,749 - 73,573,275 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,503,086 - 73,571,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,748,425 - 70,816,344 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,755,806 - 69,823,725 (+)NCBIMGSCv36mm8
CeleraX64,756,927 - 64,824,859 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.33NCBI
Atp2b3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,367,582 - 156,464,085 (+)NCBIGRCr8
mRatBN7.2X151,216,483 - 151,289,069 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,216,507 - 151,286,775 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,357,660 - 153,425,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X156,920,896 - 156,988,937 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,592,722 - 154,660,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,236,400 - 157,312,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX157,239,306 - 157,312,028 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,988,825 - 153,056,732 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,400,374 - 159,470,665 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,473,827 - 159,544,098 (+)NCBI
Celera1136,605,191 - 136,673,058 (-)NCBICelera
Cytogenetic MapXq37NCBI
ATP2B3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,558,019 - 153,623,332 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,561,623 - 153,626,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,068,171 - 143,133,479 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X152,955,106 - 153,019,445 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX152,955,109 - 153,019,445 (+)Ensemblpanpan1.1panPan2
ATP2B3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,355,217 - 121,405,245 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,361,239 - 121,403,609 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,673,819 - 106,733,766 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,485,607 - 124,545,662 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,485,472 - 124,547,678 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,255,434 - 120,315,368 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,770,529 - 122,830,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,532,564 - 122,592,473 (+)NCBIUU_Cfam_GSD_1.0
Atp2b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,659,196 - 118,728,749 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809396,733 - 466,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809396,883 - 466,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2B3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,301,713 - 124,357,653 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,318,874 - 124,357,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X141,865,126 - 141,921,057 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2B3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X127,966,366 - 128,013,900 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX127,966,492 - 128,013,901 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606565,809,624 - 65,875,629 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp2b3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946247,168 - 307,663 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946247,032 - 307,645 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000009295   ⟹   ENSCLAP00000009166
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955580269,100 - 333,471 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009296   ⟹   ENSCLAP00000009167
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955580269,100 - 333,471 (+)Ensembl
RefSeq Acc Id: XM_013509708   ⟹   XP_013365162
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580286,092 - 332,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509709   ⟹   XP_013365163
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580286,092 - 332,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509710   ⟹   XP_013365164
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580286,092 - 321,327 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365162 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365163 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365164 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009166.1
  ENSCLAP00000009167
  ENSCLAP00000009167.1
RefSeq Acc Id: XP_013365162   ⟸   XM_013509708
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V2J7 (UniProtKB/TrEMBL),   A0A8C2V238 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365163   ⟸   XM_013509709
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V238 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365164   ⟸   XM_013509710
- Peptide Label: isoform X3
- UniProtKB: A0A8C2V238 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009166   ⟸   ENSCLAT00000009295
RefSeq Acc Id: ENSCLAP00000009167   ⟸   ENSCLAT00000009296

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006386 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009295.1 UniProtKB/TrEMBL
  ENSCLAT00000009296 ENTREZGENE
  ENSCLAT00000009296.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATP_Ca_trans_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIB UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp2b3 ENTREZGENE
PANTHER CATION TRANSPORTING ATPASE UniProtKB/TrEMBL
  PLASMA MEMBRANE CALCIUM-TRANSPORTING ATPASE 3 UniProtKB/TrEMBL
Pfam ATP_Ca_trans_C UniProtKB/TrEMBL
  Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8C2V238 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V2J7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Atp2b3  ATPase plasma membrane Ca2+ transporting 3    ATPase, Ca++ transporting, plasma membrane 3  Symbol and/or name change 5135510 APPROVED