ATP2B3 (ATPase plasma membrane Ca2+ transporting 3) - Rat Genome Database

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Gene: ATP2B3 (ATPase plasma membrane Ca2+ transporting 3) Sus scrofa
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Symbol: ATP2B3
Name: ATPase plasma membrane Ca2+ transporting 3
RGD ID: 14135251
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN neural retina development (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adenoma (ortholog); adrenal cortical adenoma (ortholog); adrenoleukodystrophy (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); parallel fiber (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: plasma membrane calcium-transporting ATPase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,301,713 - 124,357,653 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,318,874 - 124,357,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X141,865,126 - 141,921,057 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP2B3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,301,713 - 124,357,653 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,318,874 - 124,357,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X141,865,126 - 141,921,057 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2B3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,517,642 - 153,582,929 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,517,642 - 153,582,939 (+)EnsemblGRCh38hg38GRCh38
GRCh37X152,783,100 - 152,848,387 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,454,774 - 152,501,581 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X152,322,426 - 152,369,234NCBI
CeleraX153,035,263 - 153,082,068 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,460,036 - 141,506,946 (+)NCBIHuRef
CHM1_1X152,676,076 - 152,722,878 (+)NCBICHM1_1
T2T-CHM13v2.0X151,791,198 - 151,856,492 (+)NCBIT2T-CHM13v2.0
Atp2b3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,546,356 - 72,632,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,546,692 - 72,614,611 (+)EnsemblGRCm39 Ensembl
GRCm38X73,502,749 - 73,573,275 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,503,086 - 73,571,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,748,425 - 70,816,344 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,755,806 - 69,823,725 (+)NCBIMGSCv36mm8
CeleraX64,756,927 - 64,824,859 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.33NCBI
Atp2b3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,367,582 - 156,464,085 (+)NCBIGRCr8
mRatBN7.2X151,216,483 - 151,289,069 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,216,507 - 151,286,775 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,357,660 - 153,425,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X156,920,896 - 156,988,937 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,592,722 - 154,660,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,236,400 - 157,312,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX157,239,306 - 157,312,028 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,988,825 - 153,056,732 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,400,374 - 159,470,665 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,473,827 - 159,544,098 (+)NCBI
Celera1136,605,191 - 136,673,058 (-)NCBICelera
Cytogenetic MapXq37NCBI
Atp2b3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580269,100 - 333,471 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580286,092 - 332,657 (+)NCBIChiLan1.0ChiLan1.0
ATP2B3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,558,019 - 153,623,332 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,561,623 - 153,626,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,068,171 - 143,133,479 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X152,955,106 - 153,019,445 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX152,955,109 - 153,019,445 (+)Ensemblpanpan1.1panPan2
ATP2B3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,355,217 - 121,405,245 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,361,239 - 121,403,609 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,673,819 - 106,733,766 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,485,607 - 124,545,662 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,485,472 - 124,547,678 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,255,434 - 120,315,368 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,770,529 - 122,830,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,532,564 - 122,592,473 (+)NCBIUU_Cfam_GSD_1.0
Atp2b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,659,196 - 118,728,749 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809396,733 - 466,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809396,883 - 466,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2B3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X127,966,366 - 128,013,900 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX127,966,492 - 128,013,901 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606565,809,624 - 65,875,629 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp2b3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946247,168 - 307,663 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946247,032 - 307,645 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP2B3
347 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system musculoskeletal system nervous system renal system reproductive system
High
Medium 3
Low 3 2 20 1 1
Below cutoff 2 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000013959   ⟹   ENSSSCP00000013576
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,301,767 - 124,357,653 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000032842   ⟹   ENSSSCP00000029190
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,301,725 - 124,357,648 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000035037   ⟹   ENSSSCP00000030524
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,318,879 - 124,350,229 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000035541   ⟹   ENSSSCP00000030219
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,318,879 - 124,344,899 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043752   ⟹   ENSSSCP00000056668
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,318,883 - 124,350,264 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000060857   ⟹   ENSSSCP00000039981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,301,713 - 124,357,613 (+)Ensembl
RefSeq Acc Id: XM_021079667   ⟹   XP_020935326
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X124,318,874 - 124,357,653 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020935326 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000013576.5
  ENSSSCP00000029190
  ENSSSCP00000029190.4
  ENSSSCP00000030219.4
  ENSSSCP00000030524.3
  ENSSSCP00000039981.2
  ENSSSCP00000056668.2
  ENSSSCP00025045935.1
  ENSSSCP00025046019.1
  ENSSSCP00025046073.1
  ENSSSCP00025046123.1
  ENSSSCP00025046173.1
  ENSSSCP00025046234.1
  ENSSSCP00030016672.1
  ENSSSCP00030016682.1
  ENSSSCP00030016684.1
  ENSSSCP00030016691.1
  ENSSSCP00030016696.1
  ENSSSCP00030016703.1
  ENSSSCP00030016711.1
  ENSSSCP00035022011.1
  ENSSSCP00035022023.1
  ENSSSCP00035022027.1
  ENSSSCP00035022038.1
  ENSSSCP00035022046.1
  ENSSSCP00035022053.1
  ENSSSCP00040045556.1
  ENSSSCP00040045815.1
  ENSSSCP00040045903.1
  ENSSSCP00040045929.1
  ENSSSCP00040045969.1
  ENSSSCP00040045997.1
  ENSSSCP00040046021.1
  ENSSSCP00045039039.1
  ENSSSCP00045039254.1
  ENSSSCP00045039379.1
  ENSSSCP00045039566.1
  ENSSSCP00045039709.1
  ENSSSCP00045039821.1
  ENSSSCP00045039916.1
  ENSSSCP00050037788.1
  ENSSSCP00050037794.1
  ENSSSCP00055014358.1
  ENSSSCP00055014480.1
  ENSSSCP00055014591.1
  ENSSSCP00055014672.1
  ENSSSCP00055014763.1
  ENSSSCP00055014824.1
  ENSSSCP00055014882.1
  ENSSSCP00060004185.1
  ENSSSCP00060004187.1
  ENSSSCP00060004195.1
  ENSSSCP00060004197.1
  ENSSSCP00060004200.1
  ENSSSCP00060004202.1
  ENSSSCP00060004204.1
  ENSSSCP00065010665.1
  ENSSSCP00065010670.1
  ENSSSCP00065010674.1
  ENSSSCP00065010678.1
  ENSSSCP00065010679.1
  ENSSSCP00065010682.1
  ENSSSCP00065010685.1
RefSeq Acc Id: XP_020935326   ⟸   XM_021079667
- UniProtKB: A0A8D1SXJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000030524   ⟸   ENSSSCT00000035037
RefSeq Acc Id: ENSSSCP00000030219   ⟸   ENSSSCT00000035541
RefSeq Acc Id: ENSSSCP00000039981   ⟸   ENSSSCT00000060857
RefSeq Acc Id: ENSSSCP00000029190   ⟸   ENSSSCT00000032842
RefSeq Acc Id: ENSSSCP00000056668   ⟸   ENSSSCT00000043752
RefSeq Acc Id: ENSSSCP00000013576   ⟸   ENSSSCT00000013959

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012769 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025074916 UniProtKB/TrEMBL
  ENSSSCG00030026096 UniProtKB/TrEMBL
  ENSSSCG00035041121 UniProtKB/TrEMBL
  ENSSSCG00040072718 UniProtKB/TrEMBL
  ENSSSCG00045032155 UniProtKB/TrEMBL
  ENSSSCG00050064680 UniProtKB/TrEMBL
  ENSSSCG00055009036 UniProtKB/TrEMBL
  ENSSSCG00060008747 UniProtKB/TrEMBL
  ENSSSCG00065019501 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013959.5 UniProtKB/TrEMBL
  ENSSSCT00000032842 ENTREZGENE
  ENSSSCT00000032842.4 UniProtKB/TrEMBL
  ENSSSCT00000035037.3 UniProtKB/TrEMBL
  ENSSSCT00000035541.4 UniProtKB/TrEMBL
  ENSSSCT00000043752.2 UniProtKB/TrEMBL
  ENSSSCT00000060857.3 UniProtKB/TrEMBL
  ENSSSCT00025103647.1 UniProtKB/TrEMBL
  ENSSSCT00025103782.1 UniProtKB/TrEMBL
  ENSSSCT00025103862.1 UniProtKB/TrEMBL
  ENSSSCT00025103956.1 UniProtKB/TrEMBL
  ENSSSCT00025104041.1 UniProtKB/TrEMBL
  ENSSSCT00025104131.1 UniProtKB/TrEMBL
  ENSSSCT00030036512.1 UniProtKB/TrEMBL
  ENSSSCT00030036531.1 UniProtKB/TrEMBL
  ENSSSCT00030036535.1 UniProtKB/TrEMBL
  ENSSSCT00030036545.1 UniProtKB/TrEMBL
  ENSSSCT00030036552.1 UniProtKB/TrEMBL
  ENSSSCT00030036562.1 UniProtKB/TrEMBL
  ENSSSCT00030036574.1 UniProtKB/TrEMBL
  ENSSSCT00035054703.1 UniProtKB/TrEMBL
  ENSSSCT00035054728.1 UniProtKB/TrEMBL
  ENSSSCT00035054735.1 UniProtKB/TrEMBL
  ENSSSCT00035054754.1 UniProtKB/TrEMBL
  ENSSSCT00035054774.1 UniProtKB/TrEMBL
  ENSSSCT00035054783.1 UniProtKB/TrEMBL
  ENSSSCT00040101179.1 UniProtKB/TrEMBL
  ENSSSCT00040101676.1 UniProtKB/TrEMBL
  ENSSSCT00040101828.1 UniProtKB/TrEMBL
  ENSSSCT00040101862.1 UniProtKB/TrEMBL
  ENSSSCT00040101912.1 UniProtKB/TrEMBL
  ENSSSCT00040101952.1 UniProtKB/TrEMBL
  ENSSSCT00040101989.1 UniProtKB/TrEMBL
  ENSSSCT00045055985.1 UniProtKB/TrEMBL
  ENSSSCT00045056268.1 UniProtKB/TrEMBL
  ENSSSCT00045056425.1 UniProtKB/TrEMBL
  ENSSSCT00045056649.1 UniProtKB/TrEMBL
  ENSSSCT00045056851.1 UniProtKB/TrEMBL
  ENSSSCT00045056991.1 UniProtKB/TrEMBL
  ENSSSCT00045057123.1 UniProtKB/TrEMBL
  ENSSSCT00050088117.1 UniProtKB/TrEMBL
  ENSSSCT00050088138.1 UniProtKB/TrEMBL
  ENSSSCT00055018246.1 UniProtKB/TrEMBL
  ENSSSCT00055018404.1 UniProtKB/TrEMBL
  ENSSSCT00055018536.1 UniProtKB/TrEMBL
  ENSSSCT00055018628.1 UniProtKB/TrEMBL
  ENSSSCT00055018732.1 UniProtKB/TrEMBL
  ENSSSCT00055018810.1 UniProtKB/TrEMBL
  ENSSSCT00055018884.1 UniProtKB/TrEMBL
  ENSSSCT00060011279.1 UniProtKB/TrEMBL
  ENSSSCT00060011285.1 UniProtKB/TrEMBL
  ENSSSCT00060011302.1 UniProtKB/TrEMBL
  ENSSSCT00060011304.1 UniProtKB/TrEMBL
  ENSSSCT00060011309.1 UniProtKB/TrEMBL
  ENSSSCT00060011313.1 UniProtKB/TrEMBL
  ENSSSCT00060011316.1 UniProtKB/TrEMBL
  ENSSSCT00065026003.1 UniProtKB/TrEMBL
  ENSSSCT00065026027.1 UniProtKB/TrEMBL
  ENSSSCT00065026033.1 UniProtKB/TrEMBL
  ENSSSCT00065026040.1 UniProtKB/TrEMBL
  ENSSSCT00065026042.1 UniProtKB/TrEMBL
  ENSSSCT00065026047.1 UniProtKB/TrEMBL
  ENSSSCT00065026052.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATP_Ca_trans_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIB UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene ATP2B3 ENTREZGENE
PANTHER CATION TRANSPORTING ATPASE UniProtKB/TrEMBL
  PLASMA MEMBRANE CALCIUM-TRANSPORTING ATPASE 3 UniProtKB/TrEMBL
Pfam ATP_Ca_trans_C UniProtKB/TrEMBL
  Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A287A881_PIG UniProtKB/TrEMBL
  A0A287BKH5_PIG UniProtKB/TrEMBL
  A0A5K1VCX5_PIG UniProtKB/TrEMBL
  A0A8D0W8N6_PIG UniProtKB/TrEMBL
  A0A8D0ZUA2_PIG UniProtKB/TrEMBL
  A0A8D1IXF2_PIG UniProtKB/TrEMBL
  A0A8D1J032_PIG UniProtKB/TrEMBL
  A0A8D1NI91_PIG UniProtKB/TrEMBL
  A0A8D1Q6V9_PIG UniProtKB/TrEMBL
  A0A8D1SLK0_PIG UniProtKB/TrEMBL
  A0A8D1SXJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UH94_PIG UniProtKB/TrEMBL
  A0A8D1XW40_PIG UniProtKB/TrEMBL
  F1S2B3_PIG UniProtKB/TrEMBL
  K7GQP7_PIG UniProtKB/TrEMBL
  K7GRJ7_PIG UniProtKB/TrEMBL
UniProt Secondary K7GMU3 UniProtKB/TrEMBL
VGNC ID VGNC:85650 ENTREZGENE