Bud31 (BUD31 spliceosome associated protein) - Rat Genome Database

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Gene: Bud31 (BUD31 spliceosome associated protein) Rattus norvegicus
Analyze
Symbol: Bud31
Name: BUD31 spliceosome associated protein (Ensembl:BUD31 homolog)
RGD ID: 621103
Description: Predicted to enable nuclear receptor binding activity and transcription coactivator activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in chromatin and nucleus. Predicted to be part of U2-type catalytic step 2 spliceosome. Biomarker of schistosomiasis. Orthologous to human BUD31 (BUD31 homolog); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BUD31 homolog; BUD31 homolog (S. cerevisiae); BUD31 homolog (yeast); EDG-2; Edg2; G10; LPA1; maternal G10 transcript; protein BUD31 homolog; protein G10 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,576,602 - 14,584,132 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1214,576,605 - 14,584,039 (-)EnsemblGRCr8
mRatBN7.2129,462,838 - 9,470,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,462,441 - 9,470,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1210,267,864 - 10,275,146 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,891,070 - 10,898,348 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,914,494 - 9,921,776 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,232,963 - 11,240,449 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,232,964 - 11,240,400 (-)Ensemblrn6Rnor6.0
Rnor_5.01213,302,066 - 13,309,485 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4129,776,932 - 9,784,337 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1211,267,999 - 11,275,310 (-)NCBICelera
RGSC_v3.1129,806,860 - 9,814,263 (-)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
triadimefon  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
Yessotoxin  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A rat G protein-coupled receptor selectively expressed in myelin-forming cells. Allard J, etal., Eur J Neurosci. 1998 Mar;10(3):1045-53.
2. Edg-2 in myelin-forming cells: isoforms, genomic mapping, and exclusion in Charcot-Marie-Tooth disease. Allard J, etal., Glia. 1999 Apr;26(2):176-85.
3. Immunohistological localization of the myelinating cell-specific receptor LP(A1). Cervera P, etal., Glia. 2002 Apr 15;38(2):126-36.
4. Splicing and beyond: the many faces of the Prp19 complex. Chanarat S and Strasser K, Biochim Biophys Acta. 2013 Oct;1833(10):2126-34. doi: 10.1016/j.bbamcr.2013.05.023. Epub 2013 Jun 3.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. The temporal profile of genomic responses and protein synthesis in ischemic tolerance of the rat brain induced by repeated hyperbaric oxygen. Hirata T, etal., Brain Res. 2007 Jan 26;1130(1):214-22. Epub 2006 Dec 13.
7. Identification and profiling of circulating antigens by screening with the sera from schistosomiasis japonica patients. Lu Y, etal., Parasit Vectors. 2012 Jun 11;5:115. doi: 10.1186/1756-3305-5-115.
8. A functional SNP in EDG2 increases susceptibility to knee osteoarthritis in Japanese. Mototani H, etal., Hum Mol Genet. 2008 Jun 15;17(12):1790-7. doi: 10.1093/hmg/ddn069. Epub 2008 Mar 6.
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Hepatic oval (stem) cell expression of endothelial differentiation gene receptors for lysophosphatidic acid in mouse chronic liver injury. Sautin YY, etal., J Hematother Stem Cell Res. 2002 Aug;11(4):643-9.
14. Oligodendroglial expression of Edg-2 receptor: developmental analysis and pharmacological responses to lysophosphatidic acid. Stankoff B, etal., Mol Cell Neurosci 2002 Jul;20(3):415-28.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:17026968   PMID:25091737   PMID:28076346  


Genomics

Comparative Map Data
Bud31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,576,602 - 14,584,132 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1214,576,605 - 14,584,039 (-)EnsemblGRCr8
mRatBN7.2129,462,838 - 9,470,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,462,441 - 9,470,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1210,267,864 - 10,275,146 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,891,070 - 10,898,348 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,914,494 - 9,921,776 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,232,963 - 11,240,449 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,232,964 - 11,240,400 (-)Ensemblrn6Rnor6.0
Rnor_5.01213,302,066 - 13,309,485 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4129,776,932 - 9,784,337 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1211,267,999 - 11,275,310 (-)NCBICelera
RGSC_v3.1129,806,860 - 9,814,263 (-)NCBI
Cytogenetic Map12p11NCBI
BUD31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,408,969 - 99,419,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,408,615 - 99,419,618 (+)Ensemblhg38GRCh38
GRCh37799,006,592 - 99,017,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,844,548 - 98,855,175 (+)NCBIBuild 36Build 36hg18NCBI36
Celera793,740,801 - 93,751,440 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,642,344 - 93,652,982 (+)NCBIHuRef
CHM1_1798,936,679 - 98,947,317 (+)NCBICHM1_1
T2T-CHM13v2.07100,647,870 - 100,658,517 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,366,375 - 98,377,013 (+)NCBI
Bud31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,077,186 - 145,084,888 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,077,172 - 145,084,888 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385145,140,376 - 145,148,078 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,140,362 - 145,148,078 (+)Ensemblmm10GRCm38
MGSCv375145,901,266 - 145,908,943 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365145,393,924 - 145,401,601 (+)NCBIMGSCv36mm8
Celera5142,132,269 - 142,139,945 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map585.05NCBI
Bud31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,083,472 - 15,092,217 (+)Ensembl
ChiLan1.0NW_00495546015,083,472 - 15,092,217 (+)NCBIChiLan1.0ChiLan1.0
BUD31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,266,324 - 117,277,347 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,531,235 - 165,541,982 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,382,353 - 91,393,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17104,884,088 - 104,894,865 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,884,088 - 104,894,865 (+)EnsemblpanPan2panpan1.1
BUD31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,169,422 - 10,178,231 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,795,002 - 11,804,994 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0610,169,654 - 10,178,420 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,169,604 - 10,178,138 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,038,422 - 10,048,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,018,132 - 10,026,908 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,251,934 - 10,260,704 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bud31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,261,066 - 138,268,691 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,676,359 - 1,686,072 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,676,361 - 1,684,194 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BUD31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,355,244 - 6,361,207 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.136,355,249 - 6,361,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,693,614 - 6,699,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BUD31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,734,417 - 13,750,749 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,733,391 - 13,749,692 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660702,552,479 - 2,562,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bud31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,833,370 - 32,841,018 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474032,833,010 - 32,841,018 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bud31
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1168,147,430 - 8,155,373 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bud31
47 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:55
Interacting mature miRNAs:58
Transcripts:ENSRNOT00000001307
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
RH128787  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2129,462,946 - 9,464,356 (+)MAPPERmRatBN7.2
Rnor_6.01211,233,072 - 11,234,481NCBIRnor6.0
Rnor_5.01213,302,175 - 13,303,584UniSTSRnor5.0
RGSC_v3.4129,777,041 - 9,778,450UniSTSRGSC3.4
Celera1211,268,108 - 11,269,517UniSTS
RH 3.4 Map31493.1UniSTS
Cytogenetic Map12p11UniSTS
BI298983  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2129,463,074 - 9,463,234 (+)MAPPERmRatBN7.2
Rnor_6.01211,233,200 - 11,233,359NCBIRnor6.0
Rnor_5.01213,302,303 - 13,302,462UniSTSRnor5.0
RGSC_v3.4129,777,169 - 9,777,328UniSTSRGSC3.4
Celera1211,268,236 - 11,268,395UniSTS
RH 3.4 Map12101.68UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF058791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000001307   ⟹   ENSRNOP00000001307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1214,576,605 - 14,584,039 (-)Ensembl
mRatBN7.2 Ensembl129,462,841 - 9,470,302 (-)Ensembl
Rnor_6.0 Ensembl1211,232,966 - 11,240,400 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075987   ⟹   ENSRNOP00000068389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,462,441 - 9,470,509 (-)Ensembl
Rnor_6.0 Ensembl1211,232,964 - 11,240,399 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076149   ⟹   ENSRNOP00000068388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1211,234,561 - 11,240,383 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076423   ⟹   ENSRNOP00000068416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1211,234,436 - 11,240,101 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088603   ⟹   ENSRNOP00000068574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1211,232,964 - 11,239,521 (-)Ensembl
RefSeq Acc Id: NM_053556   ⟹   NP_446008
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,584,007 (-)NCBI
mRatBN7.2129,462,838 - 9,470,245 (-)NCBI
Rnor_6.01211,232,963 - 11,240,368 (-)NCBI
Rnor_5.01213,302,066 - 13,309,485 (-)NCBI
RGSC_v3.4129,776,932 - 9,784,337 (-)RGD
Celera1211,267,999 - 11,275,310 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248887   ⟹   XP_006248949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,584,132 (-)NCBI
mRatBN7.2129,462,838 - 9,470,387 (-)NCBI
Rnor_6.01211,232,963 - 11,240,449 (-)NCBI
Rnor_5.01213,302,066 - 13,309,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248889   ⟹   XP_006248951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,584,132 (-)NCBI
mRatBN7.2129,462,838 - 9,470,387 (-)NCBI
Rnor_6.01211,232,963 - 11,240,449 (-)NCBI
Rnor_5.01213,302,066 - 13,309,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089844   ⟹   XP_038945772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,584,065 (-)NCBI
mRatBN7.2129,462,838 - 9,470,220 (-)NCBI
RefSeq Acc Id: XM_039089845   ⟹   XP_038945773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,583,894 (-)NCBI
mRatBN7.2129,462,838 - 9,469,992 (-)NCBI
RefSeq Acc Id: XM_039089846   ⟹   XP_038945774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,583,809 (-)NCBI
mRatBN7.2129,462,838 - 9,469,995 (-)NCBI
RefSeq Acc Id: XM_063271721   ⟹   XP_063127791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,584,065 (-)NCBI
RefSeq Acc Id: XM_063271723   ⟹   XP_063127793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,583,808 (-)NCBI
RefSeq Acc Id: XM_063271724   ⟹   XP_063127794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,576,602 - 14,584,001 (-)NCBI
RefSeq Acc Id: NP_446008   ⟸   NM_053556
- UniProtKB: O70454 (UniProtKB/Swiss-Prot),   Q6PDW3 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248951   ⟸   XM_006248889
- Peptide Label: isoform X1
- UniProtKB: Q6PDW3 (UniProtKB/Swiss-Prot),   O70454 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248949   ⟸   XM_006248887
- Peptide Label: isoform X1
- UniProtKB: Q6PDW3 (UniProtKB/Swiss-Prot),   O70454 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068389   ⟸   ENSRNOT00000075987
Ensembl Acc Id: ENSRNOP00000001307   ⟸   ENSRNOT00000001307
Ensembl Acc Id: ENSRNOP00000068388   ⟸   ENSRNOT00000076149
Ensembl Acc Id: ENSRNOP00000068574   ⟸   ENSRNOT00000088603
Ensembl Acc Id: ENSRNOP00000068416   ⟸   ENSRNOT00000076423
RefSeq Acc Id: XP_038945772   ⟸   XM_039089844
- Peptide Label: isoform X1
- UniProtKB: O70454 (UniProtKB/Swiss-Prot),   Q6PDW3 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945774   ⟸   XM_039089846
- Peptide Label: isoform X1
- UniProtKB: O70454 (UniProtKB/Swiss-Prot),   Q6PDW3 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945773   ⟸   XM_039089845
- Peptide Label: isoform X1
- UniProtKB: O70454 (UniProtKB/Swiss-Prot),   Q6PDW3 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127791   ⟸   XM_063271721
- Peptide Label: isoform X1
- UniProtKB: Q6PDW3 (UniProtKB/Swiss-Prot),   O70454 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127794   ⟸   XM_063271724
- Peptide Label: isoform X1
- UniProtKB: Q6PDW3 (UniProtKB/Swiss-Prot),   O70454 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127793   ⟸   XM_063271723
- Peptide Label: isoform X1
- UniProtKB: Q6PDW3 (UniProtKB/Swiss-Prot),   O70454 (UniProtKB/Swiss-Prot),   A6K1F5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70454-F1-model_v2 AlphaFold O70454 1-144 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698417
Promoter ID:EPDNEW_R8941
Type:initiation region
Name:Bud31_1
Description:BUD31 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01211,240,390 - 11,240,450EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621103 AgrOrtholog
BioCyc Gene G2FUF-20057 BioCyc
Ensembl Genes ENSRNOG00000000989 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001307 ENTREZGENE
  ENSRNOT00000001307.8 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887068 IMAGE-MGC_LOAD
InterPro BUD31/G10-rel_CS UniProtKB/Swiss-Prot
  G10 UniProtKB/Swiss-Prot
KEGG Report rno:89819 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72742 IMAGE-MGC_LOAD
NCBI Gene 89819 ENTREZGENE
PANTHER PROTEIN BUD31 HOMOLOG UniProtKB/Swiss-Prot
  PTHR19411 UniProtKB/Swiss-Prot
Pfam G10 UniProtKB/Swiss-Prot
PhenoGen Bud31 PhenoGen
PRINTS G10 UniProtKB/Swiss-Prot
PROSITE G10_1 UniProtKB/Swiss-Prot
  G10_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000989 RatGTEx
UniProt A6K1F5 ENTREZGENE, UniProtKB/TrEMBL
  BUD31_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6PDW3 ENTREZGENE
UniProt Secondary Q6PDW3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Bud31  BUD31 spliceosome associated protein  Bud31  BUD31 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-09 Bud31  BUD31 homolog  Bud31  BUD31 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Bud31  BUD31 homolog (S. cerevisiae)  Bud31  BUD31 homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-02-05 Bud31  BUD31 homolog (yeast)  G10  maternal G10 transcript  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-20 G10  maternal G10 transcript      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 G10  maternal G10 transcript      Symbol and Name status set to provisional 70820 PROVISIONAL