Tfpt (TCF3 fusion partner) - Rat Genome Database

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Gene: Tfpt (TCF3 fusion partner) Rattus norvegicus
Analyze
Symbol: Tfpt
Name: TCF3 fusion partner
RGD ID: 620839
Description: Enables DNA binding activity and protein kinase binding activity. Involved in apoptotic process; male gonad development; and positive regulation of apoptotic process. Located in cytoplasm and nucleus. Colocalizes with actin filament. Orthologous to human TFPT (TCF3 fusion partner); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 2,4-dinitrotoluene; 2-methoxyethanol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Amida; TCF3 (E2A) fusion partner; TCF3 (E2A) fusion partner (in childhood leukemia); TCF3 fusion partner homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,502,994 - 74,512,766 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,502,994 - 74,513,370 (+)EnsemblGRCr8
mRatBN7.2165,587,633 - 65,597,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,035,758 - 71,045,530 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,458,734 - 79,468,506 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,785,631 - 72,795,369 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,162,525 - 64,172,307 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)Ensemblrn6Rnor6.0
Rnor_5.0163,155,151 - 63,164,592 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4163,901,368 - 63,910,301NCBIRGSC_v3.4RGSC_v3.4rn4
Celera163,313,363 - 63,322,296 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin filament  (IDA)
cytoplasm  (IDA)
Ino80 complex  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Par-4-mediated recruitment of Amida to the actin cytoskeleton leads to the induction of apoptosis. Boosen M, etal., Exp Cell Res. 2005 Dec 10;311(2):177-91. Epub 2005 Oct 14.
2. Amida predominantly expressed and developmentally regulated in rat testis. Gan Y, etal., Biochem Biophys Res Commun 2001 Oct 26;288(2):407-12.
3. Arrest of cell cycle by amida which is phosphorylated by Cdc2 kinase. Gan Y, etal., Mol Cell Biochem. 2003 Apr;246(1-2):179-85.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Molecular cloning and characterization of Amida, a novel protein which interacts with a neuron-specific immediate early gene product arc, contains novel nuclear localization signals, and causes cell death in cultured cells. Irie Y, etal., J Biol Chem 2000 Jan 28;275(4):2647-53.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:15057822   PMID:17041757   PMID:17617061   PMID:21303910  


Genomics

Comparative Map Data
Tfpt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,502,994 - 74,512,766 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,502,994 - 74,513,370 (+)EnsemblGRCr8
mRatBN7.2165,587,633 - 65,597,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,035,758 - 71,045,530 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,458,734 - 79,468,506 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,785,631 - 72,795,369 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,162,525 - 64,172,307 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)Ensemblrn6Rnor6.0
Rnor_5.0163,155,151 - 63,164,592 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4163,901,368 - 63,910,301NCBIRGSC_v3.4RGSC_v3.4rn4
Celera163,313,363 - 63,322,296 (+)NCBICelera
Cytogenetic Map1q12NCBI
TFPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,107,020 - 54,115,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,107,020 - 54,115,657 (-)Ensemblhg38GRCh38
GRCh371954,610,327 - 54,619,037 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,302,142 - 59,310,848 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341959,302,141 - 59,310,848NCBI
Celera1951,650,001 - 51,659,116 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,926,190 - 50,935,264 (-)NCBIHuRef
CHM1_11954,612,032 - 54,620,694 (-)NCBICHM1_1
T2T-CHM13v2.01957,185,717 - 57,194,354 (-)NCBIT2T-CHM13v2.0
Tfpt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,623,323 - 3,632,911 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,623,323 - 3,632,928 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3873,620,324 - 3,629,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,620,324 - 3,629,929 (-)Ensemblmm10GRCm38
MGSCv3773,571,926 - 3,581,486 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3673,223,411 - 3,232,971 (-)NCBIMGSCv36mm8
Celera73,532,119 - 3,541,804 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.09NCBI
Tfpt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604136,427 - 139,761 (+)Ensembl
ChiLan1.0NW_004955604136,357 - 139,799 (+)NCBIChiLan1.0ChiLan1.0
TFPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,111,170 - 60,120,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,032,968 - 62,041,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,039,142 - 51,048,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,882,348 - 59,891,335 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,879,141 - 59,891,335 (-)EnsemblpanPan2panpan1.1
TFPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,090,723 - 103,098,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,989,360 - 103,098,573 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1103,152,509 - 103,160,418 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01103,735,871 - 103,743,780 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,735,933 - 103,743,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,373,897 - 103,381,659 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,135,338 - 103,143,065 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,849,282 - 103,857,192 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tfpt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,698,376 - 2,702,823 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994234,992 - 239,425 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936994234,978 - 239,425 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFPT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,011,491 - 56,018,169 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1656,011,496 - 56,018,166 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,199,501 - 53,206,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TFPT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,782,622 - 46,790,461 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,781,471 - 46,790,804 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607326,871,578 - 26,880,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfpt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,455,422 - 2,459,367 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248322,455,643 - 2,459,379 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tfpt
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12178,208,692 - 178,219,817 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tfpt
23 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:82
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000018913
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
RH130105  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8174,512,138 - 74,512,644 (+)Marker Load Pipeline
mRatBN7.2165,596,777 - 65,597,283 (+)MAPPERmRatBN7.2
Rnor_6.0164,171,678 - 64,172,183NCBIRnor6.0
Rnor_5.0163,163,960 - 63,164,465UniSTSRnor5.0
RGSC_v3.4163,909,707 - 63,910,212UniSTSRGSC3.4
Celera163,321,702 - 63,322,207UniSTS
RH 3.4 Map1741.9UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000089713   ⟹   ENSRNOP00000075123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,502,994 - 74,513,370 (+)Ensembl
mRatBN7.2 Ensembl165,587,934 - 65,611,689 (+)Ensembl
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104939   ⟹   ENSRNOP00000082072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,502,994 - 74,512,766 (+)Ensembl
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148273   ⟹   ENSRNOP00000106975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,502,994 - 74,512,766 (+)Ensembl
RefSeq Acc Id: NM_001398653   ⟹   NP_001385582
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,502,994 - 74,512,766 (+)NCBI
mRatBN7.2165,587,633 - 65,597,405 (+)NCBI
RefSeq Acc Id: NM_001398655   ⟹   NP_001385584
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,502,994 - 74,512,766 (+)NCBI
mRatBN7.2165,587,633 - 65,597,405 (+)NCBI
RefSeq Acc Id: NM_138870   ⟹   NP_620225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,502,994 - 74,512,766 (+)NCBI
mRatBN7.2165,587,633 - 65,597,405 (+)NCBI
Rnor_6.0164,163,339 - 64,172,272 (+)NCBI
Rnor_5.0163,155,151 - 63,164,592 (+)NCBI
RGSC_v3.4163,901,368 - 63,910,301 (+)RGD
Celera163,313,363 - 63,322,296 (+)RGD
Sequence:
RefSeq Acc Id: XM_039092939   ⟹   XP_038948867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,503,214 - 74,512,766 (+)NCBI
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
RefSeq Acc Id: XM_039092941   ⟹   XP_038948869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,503,919 - 74,512,766 (+)NCBI
mRatBN7.2165,587,960 - 65,597,407 (+)NCBI
RefSeq Acc Id: XM_039092942   ⟹   XP_038948870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,503,916 - 74,512,766 (+)NCBI
mRatBN7.2165,588,555 - 65,597,407 (+)NCBI
RefSeq Acc Id: XM_063275919   ⟹   XP_063131989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,503,214 - 74,512,766 (+)NCBI
RefSeq Acc Id: NP_620225   ⟸   NM_138870
- Peptide Label: isoform 1
- UniProtKB: Q9JMG6 (UniProtKB/Swiss-Prot),   A6KS28 (UniProtKB/TrEMBL),   A0A8I5ZV92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075123   ⟸   ENSRNOT00000089713
RefSeq Acc Id: XP_038948867   ⟸   XM_039092939
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZV92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948869   ⟸   XM_039092941
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948870   ⟸   XM_039092942
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000082072   ⟸   ENSRNOT00000104939
RefSeq Acc Id: NP_001385582   ⟸   NM_001398653
- Peptide Label: isoform 2
- UniProtKB: A0A0G2K9T8 (UniProtKB/TrEMBL),   A6KS29 (UniProtKB/TrEMBL),   A0A8I5ZV92 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385584   ⟸   NM_001398655
- Peptide Label: isoform 3
- UniProtKB: A6KS30 (UniProtKB/TrEMBL),   A0A8I5ZV92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131989   ⟸   XM_063275919
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000106975   ⟸   ENSRNOT00000148273
Protein Domains
INO80 complex subunit F

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JMG6-F1-model_v2 AlphaFold Q9JMG6 1-259 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689664
Promoter ID:EPDNEW_R189
Type:multiple initiation site
Name:Tfpt_1
Description:TCF3 fusion partner
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0164,162,849 - 64,162,909EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620839 AgrOrtholog
BioCyc Gene G2FUF-61034 BioCyc
Ensembl Genes ENSRNOG00000056098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000089713.2 UniProtKB/Swiss-Prot
  ENSRNOT00000104939 ENTREZGENE
  ENSRNOT00000148273 ENTREZGENE
InterPro INO80F UniProtKB/Swiss-Prot
  TFPT UniProtKB/Swiss-Prot
KEGG Report rno:85423 UniProtKB/Swiss-Prot
NCBI Gene 85423 ENTREZGENE
PANTHER PTHR35084 UniProtKB/Swiss-Prot
  TCF3 FUSION PARTNER UniProtKB/Swiss-Prot
Pfam INO80F UniProtKB/Swiss-Prot
PhenoGen Tfpt PhenoGen
RatGTEx ENSRNOG00000056098 RatGTEx
UniProt A0A0G2K9T8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV92 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMU1_RAT UniProtKB/TrEMBL
  A6KS28 ENTREZGENE, UniProtKB/TrEMBL
  A6KS29 ENTREZGENE, UniProtKB/TrEMBL
  A6KS30 ENTREZGENE, UniProtKB/TrEMBL
  Q9JMG6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Tfpt  TCF3 fusion partner  Tfpt  TCF3 (E2A) fusion partner  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Tfpt  TCF3 (E2A) fusion partner    TCF3 (E2A) fusion partner (in childhood leukemia)  Name updated 1299863 APPROVED
2002-08-07 Tfpt  TCF3 (E2A) fusion partner (in childhood leukemia)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization forms a complex with Arc and transports it into the nucleus 634398