Tfpt (TCF3 fusion partner) - Rat Genome Database

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Pathways
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Gene: Tfpt (TCF3 fusion partner) Heterocephalus glaber
Analyze
Symbol: Tfpt
Name: TCF3 fusion partner
RGD ID: 18929946
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN male gonad development (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of DNA repair (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH retinitis pigmentosa (ortholog); FOUND IN actin filament (ortholog); cytoplasm (ortholog); Ino80 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,455,422 - 2,459,367 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,455,643 - 2,459,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin filament  (ISO)
cytoplasm  (ISO)
Ino80 complex  (IEA,ISO)
nucleoplasm  (IEA)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tfpt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,455,422 - 2,459,367 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,455,643 - 2,459,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TFPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,107,020 - 54,115,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,107,020 - 54,115,657 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,610,327 - 54,619,037 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,302,142 - 59,310,848 (-)NCBINCBI36Build 36hg18NCBI36
Build 341959,302,141 - 59,310,848NCBI
Celera1951,650,001 - 51,659,116 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,926,190 - 50,935,264 (-)NCBIHuRef
CHM1_11954,612,032 - 54,620,694 (-)NCBICHM1_1
T2T-CHM13v2.01957,185,717 - 57,194,354 (-)NCBIT2T-CHM13v2.0
Tfpt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,623,323 - 3,632,911 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,623,323 - 3,632,928 (-)EnsemblGRCm39 Ensembl
GRCm3873,620,324 - 3,629,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,620,324 - 3,629,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,571,926 - 3,581,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,223,411 - 3,232,971 (-)NCBIMGSCv36mm8
Celera73,532,119 - 3,541,804 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.09NCBI
Tfpt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,502,994 - 74,512,766 (+)NCBIGRCr8
mRatBN7.2165,587,633 - 65,597,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,035,758 - 71,045,530 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,458,734 - 79,468,506 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,785,631 - 72,795,369 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,162,525 - 64,172,307 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,155,151 - 63,164,592 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,901,368 - 63,910,301NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,313,363 - 63,322,296 (+)NCBICelera
Cytogenetic Map1q12NCBI
Tfpt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604136,427 - 139,761 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955604136,357 - 139,799 (+)NCBIChiLan1.0ChiLan1.0
TFPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,111,170 - 60,120,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,032,968 - 62,041,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,039,142 - 51,048,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,882,348 - 59,891,335 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,879,141 - 59,891,335 (-)Ensemblpanpan1.1panPan2
TFPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,090,723 - 103,098,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,989,360 - 103,098,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,152,509 - 103,160,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,735,871 - 103,743,780 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,735,933 - 103,743,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,373,897 - 103,381,659 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,135,338 - 103,143,065 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,849,282 - 103,857,192 (+)NCBIUU_Cfam_GSD_1.0
Tfpt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,698,376 - 2,702,823 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994234,992 - 239,425 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994234,978 - 239,425 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFPT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,011,491 - 56,018,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,011,496 - 56,018,166 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,199,501 - 53,206,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TFPT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,782,622 - 46,790,461 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,781,471 - 46,790,804 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,871,578 - 26,880,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015900   ⟹   ENSHGLP00000015735
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248322,455,422 - 2,459,367 (+)Ensembl
RefSeq Acc Id: XM_004866724   ⟹   XP_004866781
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,455,643 - 2,459,379 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004866781 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015735
  ENSHGLP00100007737
GenBank Protein JAN98967 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004866781   ⟸   XM_004866724
- UniProtKB: A0A0P6JEE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015735   ⟸   ENSHGLT00000015900


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011259 Ensembl, ENTREZGENE
  ENSHGLG00100005776 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000015900 ENTREZGENE
  ENSHGLT00100007834 UniProtKB/TrEMBL
InterPro TFPT UniProtKB/TrEMBL
KEGG Report hgl:101696969 UniProtKB/TrEMBL
NCBI Gene Tfpt ENTREZGENE
PANTHER PTHR35084 UniProtKB/TrEMBL
  TCF3 FUSION PARTNER UniProtKB/TrEMBL
UniProt A0A0P6JEE7 ENTREZGENE, UniProtKB/TrEMBL