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Gene: Gfra4 (GDNF family receptor alpha 4) Rattus norvegicus

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Symbol:

Gfra4

Name:

GDNF family receptor alpha 4

RGD ID:

620503

Description:

Enables glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within glial cell-derived neurotrophic factor receptor signaling pathway and negative regulation of ossification. Located in extracellular space. Orthologous to human GFRA4 (GDNF family receptor alpha 4); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GDNF family receptor alpha-4; GDNF receptor alpha-4; GDNFR-alpha-4; GFR-alpha-4; glial cell line derived neurotrophic factor family receptor alpha 4; neurotrophic factor receptor splice variant A (Gfra4 gene); persephin receptor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GFRA4 (GDNF family receptor alpha 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Gfra4 (glial cell line derived neurotrophic factor family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gfra4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GFRA4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GFRA4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gfra4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GFRA4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GFRA4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gfra4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gfra4 (GDNF family receptor alpha 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gfra4 (glial cell line derived neurotrophic factor family receptor alpha 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GFRA4 (GDNF family receptor alpha 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gfra4a (GDNF family receptor alpha 4a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	gfra4a (GDNF family receptor alpha 4a)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y69A2AR.31	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Gfrl	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	gfra4b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	gfra4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	gfra4	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,707,970 - 138,715,279 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	138,703,114 - 138,711,561 (-)	Ensembl				GRCr8
mRatBN7.2	3	118,254,937 - 118,262,252 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,255,402 - 118,258,329 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	122,149,255 - 122,152,241 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,747,254 - 130,750,240 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,405,366 - 128,408,352 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,573,394 - 123,582,431 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,578,997 - 123,581,518 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	130,077,877 - 130,081,784 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	118,712,252 - 118,714,773 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	117,065,274 - 117,067,795 (-)	NCBI		Celera
RGSC_v3.1	3	118,617,824 - 118,620,346 (-)	NCBI
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fetal akinesia deformation sequence syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

amphotericin B (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

Butylbenzyl phthalate (EXP)

carbon nanotube (ISO)

choline (ISO)

chrysene (ISO)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dioxygen (ISO)

ethanol (ISO)

folic acid (ISO)

L-methionine (ISO)

maneb (ISO)

methamphetamine (EXP)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP)

ozone (ISO)

paracetamol (EXP)

paraquat (ISO)

phenethyl caffeate (EXP)

propanal (ISO)

resveratrol (ISO)

SCH 23390 (EXP)

sulfadimethoxine (EXP)

tetraphene (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell surface receptor protein tyrosine kinase signaling pathway (IEA)

glial cell-derived neurotrophic factor receptor signaling pathway (ISO)

negative regulation of ossification (ISO)

nervous system development (IBA)

Cellular Component

external side of plasma membrane (IBA)

extracellular region (IEA)

extracellular space (IDA)

plasma membrane (IEA,ISO)

receptor complex (IBA)

side of membrane (IEA)

Molecular Function

glial cell-derived neurotrophic factor receptor activity (IBA,IDA,IEA,ISO)

signaling receptor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Mammalian GFRalpha -4, a divergent member of the GFRalpha family of coreceptors for glial cell line-derived neurotrophic factor family ligands, is a receptor for the neurotrophic factor persephin.	Masure S, etal., J Biol Chem 2000 Dec 15;275(50):39427-34.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16497798	PMID:23376485

Genomics

Comparative Map Data

Gfra4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,707,970 - 138,715,279 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	138,703,114 - 138,711,561 (-)	Ensembl				GRCr8
mRatBN7.2	3	118,254,937 - 118,262,252 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,255,402 - 118,258,329 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	122,149,255 - 122,152,241 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,747,254 - 130,750,240 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,405,366 - 128,408,352 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,573,394 - 123,582,431 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,578,997 - 123,581,518 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	130,077,877 - 130,081,784 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	118,712,252 - 118,714,773 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	117,065,274 - 117,067,795 (-)	NCBI		Celera
RGSC_v3.1	3	118,617,824 - 118,620,346 (-)	NCBI
Cytogenetic Map	3	q36	NCBI

GFRA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	3,659,248 - 3,663,399 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	3,659,248 - 3,663,483 (-)	Ensembl			hg38	GRCh38
GRCh37	20	3,639,895 - 3,644,046 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	3,587,939 - 3,592,046 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	3,587,938 - 3,592,046	NCBI
Celera	20	3,701,823 - 3,705,927 (-)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	3,588,274 - 3,592,378 (-)	NCBI		HuRef
CHM1_1	20	3,640,254 - 3,644,358 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	3,690,188 - 3,694,336 (-)	NCBI		T2T-CHM13v2.0

Gfra4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	130,881,552 - 130,885,008 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	130,881,552 - 130,885,008 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	131,039,632 - 131,043,088 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	131,039,632 - 131,043,088 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	130,865,912 - 130,868,824 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	130,731,617 - 130,734,123 (-)	NCBI		MGSCv36	mm8
Celera	2	132,264,900 - 132,267,812 (-)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	63.26	NCBI

Gfra4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955415	14,513,183 - 14,514,140 (-)	NCBI	ChiLan1.0	ChiLan1.0

GFRA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	4,621,663 - 4,626,719 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	4,618,488 - 4,623,544 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	3,740,538 - 3,745,601 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	3,499,690 - 3,503,081 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

GFRA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	17,685,888 - 17,690,747 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	17,686,817 - 17,690,056 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	17,515,732 - 17,520,613 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	18,104,690 - 18,109,573 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	18,105,641 - 18,109,587 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	17,699,436 - 17,704,303 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	17,811,187 - 17,816,066 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	18,138,277 - 18,143,160 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gfra4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	166,703,881 - 166,708,001 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	15,135,245 - 15,139,000 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	15,135,245 - 15,139,639 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GFRA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	32,040,863 - 32,047,762 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	32,040,183 - 32,044,396 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	36,367,615 - 36,372,394 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GFRA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666071	10,096,841 - 10,106,162 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gfra4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	4,753,792 - 4,757,642 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	4,752,376 - 4,757,642 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gfra4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	110,769,904 - 110,773,286 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gfra4
162 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	48
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000047947
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	136091420	155634702	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

RH137976

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,255,036 - 118,255,227 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,578,632 - 123,578,822	NCBI	Rnor6.0
Rnor_5.0	3	130,077,977 - 130,078,167	UniSTS	Rnor5.0
RGSC_v3.4	3	118,711,887 - 118,712,077	UniSTS	RGSC3.4
Celera	3	117,064,909 - 117,065,099	UniSTS
RH 3.4 Map	3	1013.0	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	61	149	78	77	49	23	49	6	270	117	11	127	80	92	28	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_023967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001837048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ294475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ294476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000047947 ⟹ ENSRNOP00000042875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,707,970 - 138,711,561 (-)	Ensembl
mRatBN7.2 Ensembl	3	118,255,402 - 118,257,923 (-)	Ensembl
Rnor_6.0 Ensembl	3	123,578,997 - 123,581,518 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104014 ⟹ ENSRNOP00000095734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,703,114 - 138,710,384 (-)	Ensembl
mRatBN7.2 Ensembl	3	118,255,402 - 118,258,329 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132677 ⟹ ENSRNOP00000106510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,707,970 - 138,710,733 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148361 ⟹ ENSRNOP00000101052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,708,283 - 138,710,733 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152461 ⟹ ENSRNOP00000109889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,707,982 - 138,710,733 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153142 ⟹ ENSRNOP00000109532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,708,283 - 138,710,956 (-)	Ensembl

RefSeq Acc Id:

NM_001395069 ⟹ NP_001381998

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,707,970 - 138,710,956 (-)	NCBI
mRatBN7.2	3	118,254,937 - 118,257,923 (-)	NCBI

RefSeq Acc Id:

NM_023967 ⟹ NP_076457

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,707,970 - 138,710,956 (-)	NCBI
mRatBN7.2	3	118,254,937 - 118,257,923 (-)	NCBI
Rnor_6.0	3	123,578,997 - 123,581,518 (-)	NCBI
Rnor_5.0	3	130,077,877 - 130,081,784 (-)	NCBI
RGSC_v3.4	3	118,712,252 - 118,714,773 (-)	RGD
Celera	3	117,065,274 - 117,067,795 (-)	RGD

Sequence:

show sequence

CTGGTAAGCTTTAAGGCAGAGGAGACCTAAGAGCTGAGACATGCTATGTTGAGTGGAGCGTATT
TACGGGTGCTGAATGAGAGGCCAGGCCAGGCAGTTTTATGGAGTCTTGGATGCCAGAGAGGGTC
AGCGAGCTCCACTGAGGGGAATCGCTGCGTGGAAGCAGCCGAGGCGTGCACAGCAGACGAGCAG
TGCCAGCAGCTGCGCTCCGAGTACGTGGCGCAATGCCTGGGCCGGGCGGGCTGGCGGGGACCCG
GGAGCTGCGTGCGCTCCCGCTGCCGCCGTGCCCTGCGCCGCTTCTTCGCCCGCGGGCCTCCGGC
GCTCACGCACGCGCTGCTCTTCTGCGGATGCGAAGGCCCCGCGTGCGCCGAGCGCCGGCGCCAG
ACATTCGCGCCCGCCTGCGCGTTCTCCGGCCCCCAGCTGGCGCCACCTTCCTGCCTGAAGCCCT
TGGACCGCTGCGAGCGAAGCCGCCGGTGCCGGCCCCGTCTCTTTGCCTTCCAGGCCTCATGCGC
TCCCGCGCCCGGCTCCCGCGACGGCTGTCCGGAGGAGGGGGGCCCGCGGTGTCTGCGCGCCTAC
GCAGGCCTTGTAGGCACCGTGGTCACCCCCAACTACCTGGACAACGTGAGCGCGCGCGTTGCGC
CCTGGTGCGGCTGTGAGGCCAGCGGAAACCGGCGCGAAGAGTGCGAAGCCTTCCGCAAGCTTTT
TACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCTCGCAACCATCAGTTCTG
CAGGACCAGTGGAACCCCTACCAGAATGCTGGGCAGGCCAAGGTGGAGGCCTGAGTGGCCTGAG
AAGAGATGGAGGCAGAAACGGTCCCCGTTTTGTCCCAAGGTGTCCTCGATGTCCATACTCACTG
CCCTGGCTCTCCAGGCCCTGCTCTAATTAGGAAGGTGAACCATGGACAACACAGCTGACTGCCA
TGTCTCTGGATTATGCTCACTGAACTGAAACTCCCTTGCCCTCAGGTC

hide sequence

RefSeq Acc Id:

XM_006235041 ⟹ XP_006235103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,707,970 - 138,715,279 (-)	NCBI
mRatBN7.2	3	118,254,937 - 118,262,252 (-)	NCBI
Rnor_6.0	3	123,575,803 - 123,582,431 (-)	NCBI
Rnor_5.0	3	130,077,877 - 130,081,784 (-)	NCBI

Sequence:

show sequence

TGAGTTTATTGGGATTACTTACAGGGGCATGATTGTCATCAAAACACCCACCGAACCATTGGGG
GTGACCCTAGTGCTCCCCGCAGGACTGGCAGTGCCTGCCCGAATGTCTTCTTTCAGGGGTTGTC
TATAACCTTGAGAAGGGGCCTTGTGAATCTCACATGTTTCCGATTTTCTGGACCTGTAAGGTTA
ATTCTTGCTTAATTTTTGAGTCTCATGAAGCTCCCCCTCCCCCCTCCCACGAGGACCCGTTCCC
ACTAGGAGCCGACTGCTCGTGTACAAAAAGCAGTCCAGCACTCTGAATCTATCGGGTTAATTCC
AGGCCCTGGCTTAGTGGCTTTGGATCTACCTGAAGGTGCTGTCTAGGGGTGGGGACAGAGTGAA
GAGAGCAGGATGTTACTTCCTCTCAGAGGCCAGGAGCACACCTGCCGGCAGGTGCCCGCTACCC
TCCAGGCTTAGCAGGTTCAAGGAAGAAGCACCAGTCCGACTGGGCCTCTGCCAATCGGTATGGC
CTGCTGCTTGGAGTCTGCACTGCTGCTGTTGCTGCTGCTGCTGCTGCTGGGTGAGAACCTGTCT
CCTCCCTGGCCCCTGCCCTCTCTGACCCTGCTCCTCAGGCACAAAGTGAGATTGCAAGAGTGAC
ACCGGTATCAATGTGCCCCTGCTGTACAGTGCCGTGCACCCCATCTTTGGGTTCAGCTGAGCCA
CCCTTCACAAATCTAGCCTTACTATCCGTGCCCCAGGAACTTTCTTTTTCCTCTCCCCCTCCCC
TGCCCTCAATGTGCTCCTCAGAAGCTCCGGCTCTTGGGAGTTTTGAGTCCCACAGCTGATGTTC
TGCCTCCCAGCACTGCCTCTTCTCCACCAGGGGGATCACAGGAAAGGATTGCTCTGTGGGGTGT
GGTGTAGAGAATGGATACTGGTAAGCTTTAAGGCAGAGGAGACCTAAGAGCTGAGACATGCTAT
GTTGAGTGGAGCGTATTTACGGGTGCTGAATGAGAGGCCAGGCCAGGCAGTTTTATGGAGTCTT
GGATGCCAGAGAGGTAAGGAGGTGGGAAAGGAAGTACTATAAACCTGAATTTGGTGACTTGGCT
GGATTTGCATATGTCCAGTGCCAAGTTCAGACATAGCTGCCGGGTTTACTGATGCTACTCTCCC
AAGGTCAGGCATTCTATTTTCCCCTGAATGGCTTTTCATCTGTGACTTATCTACATCTTCACTG
AAACTACTGGTAAACGTCCAGGTCTGTCTCAGGGCGAAGTCCTATGGTCTGCCATTAAGCCTCA
GTGTCCTGTCAGGTGAAGCTGGGGAGGATGGAAGGGGTCCAGTAGACGCTCTGTGATGCATGTG
CCAGTTCTGGAGATGGTGGTGGAGGCTGAACCTGAGCTTCTGGGGAACCTCCGAGTACTGCCTC
CATTCACGACCTGGGTGGATATCCCTAGGACCTGCCCATGCCCGCTTCCTCAGGAAAAACGGGT
CACGCCTATGGGCCACACTCTCTCCCCTTGGGTTTGGGTATCTGCCCCCAGCCCCCGCCAAATT
CCGGGGTGTGGAATGTGGAGAACCAAGCACAGAGGGCTGCAGCCTGCCCTCCCCTCACCAGGGT
CAGCGAGCTCCACTGAGGGGAATCGCTGCGTGGAAGCAGCCGAGGCGTGCACAGCAGACGAGCA
GTGCCAGCAGCTGCGCTCCGAGTACGTGGCGCAATGCCTGGGCCGGGCGGGCTGGCGGGGACCC
GGGAGCTGCGTGCGCTCCCGCTGCCGCCGTGCCCTGCGCCGCTTCTTCGCCCGCGGGCCTCCGG
CGCTCACGCACGCGCTGCTCTTCTGCGGATGCGAAGGCCCCGCGTGCGCCGAGCGCCGGCGCCA
GACATTCGCGCCCGCCTGCGCGTTCTCCGGCCCCCAGCTGGCGCCACCTTCCTGCCTGAAGCCC
TTGGACCGCTGCGAGCGAAGCCGCCGGTGCCGGCCCCGTCTCTTTGCCTTCCAGGCCTCATGCG
CTCCCGCGCCCGGCTCCCGCGACGGCTGTCCGGAGGAGGGGGGCCCGCGGTGTCTGCGCGCCTA
CGCAGGCCTTGTAGGCACCGTGGTCACCCCCAACTACCTGGACAACGTGAGCGCGCGCGTTGCG
CCCTGGTGCGGCTGTGAGGCCAGCGGAAACCGGCGCGAAGAGTGCGAAGCCTTCCGCAAGCTTT
TTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCTCGCAACCATCAGTTCT
GCAGGACCAGTGGAACCCCTACCAGAATGCTGGGTGCTGTTTCCTGCGGGTAGGTATGGGGAGA
GGATGTGGAGTTGGCAGTTTCTCATCGTTCCCTTCTGTATTTACCCTTCTCAGGCAGGCCAAGG
TGGAGGCCTGAGTGGCCTGAGAAGAGATGGAGGCAGAAACGGTCCCCGTTTTGTCCCAAGGTGT
CCTCGATGTCCATACTCACTGCCCTGGCTCTCCAGGCCCTGCTCTAATTAGGAAGGTGAACCAT
GGACAACACAGCTGACTGCCATGTCTCTGGATTATGCTCACTGAACTGAAACTCCCTTGCCCTC
AGGTCTGCTGTCCTTTGCAGTTCTGGACCCCTGCATGGCTGTCTCCTGGACTGGGAGCTGGAGG
CTAGGGCCCGACTGTTAGGTTCCCCTGTTAGTAGGCATCTCACCTGTTTTCTTCACCATCCTTG
AGATGATGGTAGATGATATTTAGCACCTGTAGACAGGGCCTCATTGGGCCCCTTGGGCTTACAG
AGCAGAACAGAGACTAGCCTCCTGCTCTTAGAATTGGGTAGTGTTCTTTTCCAAGAAGACATGG
CACTAAGGTGATCATATGAACAGACTGACAGACTGCAGTCTAAATACCCATGCCCCAGGGCCAG
CGCTGACCTTGCTTGTCACCTATGACATGGCGCTGTGTAGGGATTAAAGAGAGAGATTCAGGTC
CCTCCTGCTGGACATCCCACTGGCCTCCCAGACTCTCCCAGCACCTGCAGTGGCACAGCAGCTC
AATAAACCCATGTGCACTGAGACCAGCCTGGCTTTCTGTCATCTGACCTAGAAATGTGGAGACC
CGGGTGGCCTTGGGCACTCCAGAACTACTCCTGAGTCTGAATACTGGAGAGTAAATATACCCAT
CTCGAACAGCAGCCAGCAGCCGAGACTGAGTGCATGTGCTGCAGTTCCTTTGCAGACTCAAAGA
TGGGGTCTACTGGCTTATCAGAGAGCTCTGAGAGGTCGAGCTGGATCGGGGAAATGGCCTGAGC
AAACTGGCTCAGGCACATCTGTCCCTATGGTGTCTGTCTCTATGGTGTAGACAGGGCCCCACTG
AAGGGTAGGTAGGTGGGCATGCCACCATGCTGGGGCTTCATACTCTCTTAGCATCTATCTCAGC
AGAGGTCGCTAGGAGGAAGGCATCCTTCCCGACCAGCACTCGTGGATGAATAAGCTGATGGCCC
AGTGTGAGTCATGGGCCTTTTGCTGAGACGAGTCTCAGCCAGCAGGTCACCTGGTATAGGGGGG
ATGGTTTCTCAAAGGAGGTATTGGGCAGAGTGAGAGTGAAGCTGGGACCAAACTTCCCATTTCA
CAAAGAGAATTCCCTTCACCTGTATGGAAATGGTCACCTGTGCACTCCTGATGGGGACAGGCAG
AGTGTTGGAGCCAGAGAGTAATGACAGCATCACTCTGCCCTGCTTACCACAACTACAAAGTGGC
TCCAGCGCAGGATGCAGGGTCTGCCTGATGATTTCCTTACATGAGTGTGCTCAACTCCACTGCT
CGTCTGACTTTGATATTTAGCCTAAAATGTAGACATTAAAGTTCATGTGTGTGCCTGAGTATAC
ATATATACCATATGTTTGCAGGTGCCCACAGAGACCAGGAGGCTGTGGGCCATTTGATGTGGGT
CCTGGGCATTGAACCCAGGCCCTCTGCAATGCTCTTAACCACAGAGACATTTTTAAAAGTGGGA
ATGATTCTAAATAAAAATACAGTTCTGGATAGGAAGCGTGGCTATAAGCCTTCCAAAGCTAGTA
GGAAGATGAGGTGGAAATAAATAGTCCAGTTCCACAGTTGGTGGTGGTCACTGTCCTGGGTGCT
GGCAAGTGGGGCGGAAGAGTCACTTCATACAGTAAAGGTGTGTTTACATTATAGATCTTGAGGA
GGTCACCCAAGCAGGCCCTAAACACACTCTCATGTTTCCTCTATGAAACCAGTGCGGAGAGAAG
TAGTTCAAGGACAGGCAGAGCTCGCAGTGATGCAGCCATAGGCAAGGAATATGTCTGAAGCCAG
TGGAACATCAAGAAGGTACAGTCTGAATCCCAGGAGCCTACAGAGGGGGGCCTAGTGCCGAGAA
CAGACTTTGTTTTTAAAACTACCAAGACTGGCCAATGCTACAAACATCCCAGGAAACTAGTAGG
ATTGCCTGTTTGGTTTTTGTTACGTCTACCTAAAAAGGTCCTGACTTCCGTCTGGTGCTTTTGG
CCCGGTGCCACCTTAAAGCTGCCCTCCCCACCTACTCCCCATCACAGCTGTTGGCCTCTATCTT
GCCAGGGAGTATCAGGCCTGTGCCTGGGTCTCCGTTACCTGTTGTTGGTATTGGTTTCACGGCT
GGCAGGTGGCACGGTGGGGCTGAGGCAGAAAGGCAGGTGCTAGAAGCATTTGTGGATGTATCAG
TGGAAACTTCATGGCTCATGTATGTTCCTCTGGCGTGGGGCCCAGGTGCAAAGGTGTTGTGGAA
ACCACTCAAGTGAGTCAGGCATAGTCAAACTCATTAAAGAGCTCACTTTTACTGGAAATGTAGA
CACTGGCCAGTGAACCTGATAGGGAACAGAACGGCCACAAGAGGAGGGCAGAGGATGAGGGATG
GTAATGAGAGAAACAGACTTCACATCTCTCAGAAATGGCTGACCACCTGATTCAAGGGGCCAGC
CTGAGCCCCAGAATGATTGATTGCCCTTGTTCCCTCCCCGCTTACACATACTCAGTCAGCTGGC
AAGGAGATACAGGATGTTAACCCACTGTGTGCTCAGGTTGCTAGCTCTGAGTAGGTTCCTGTTT
CTCTTGCTTTTGTAAGTGGAGAAGTTATGAACCACATTCAGTTGACAAAACTCCAAAAGGCTAA
AACAGTACAGTTTCCAGGGTGGTTCCTGACACAACAGCCATGGGGCCACAGATTTTTCTAGGCT
TTCCTGGGTTCTCTTACTGGTCCACATTTCCTCATACTTAGATGAGTCAAGTGCTATCCACTCG
ATCTCAGTACTAAGGAGGTTAAGGCAAAAAAGATGAGTTTGAGGCAGACTGATTTGTACAGTGA
GATCTTTTCTCAAAATGCCAAAAGAATGAACCAGATGAGTTCCCAGAACAAGGAAGGATATAGG
GAAAGATTATAATGACAAAATAGAAAACTCACTGGGAAGGGCTAGAGCAAAAGAGAGCTCTGAA
CTCTCAGGTGGGTGCTGGGAGTTTAGGCAGCAGTGTCCTCCTCTGAGTTGAAAATCTTCCTTCC
TGGAGGCAAACTTCTCAAGACACATGATGTAAAAGAGAAGCACTGGGGACAGCATACCATGACA
GGGACTGCCAGCAGTGAGCTGGGATGGAGATATCTCAGAAGCCAGCGGGCAGCTCCTTGTAAAG
TAAGGTGGCATCTGGGACCCTGAAAAGCAGGAGACACATCCCTCCAGGGGATCCGCCATCTGAA
ATAGGAGGCTGCCCGCAGTAGGCTGGGATGGAGACACCTCAGTAGCCCACAGTAGCTCTTTGT

hide sequence

RefSeq Acc Id:

XM_006235042 ⟹ XP_006235104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,707,970 - 138,715,279 (-)	NCBI
mRatBN7.2	3	118,254,937 - 118,262,252 (-)	NCBI
Rnor_6.0	3	123,578,992 - 123,582,431 (-)	NCBI
Rnor_5.0	3	130,077,877 - 130,081,784 (-)	NCBI

Sequence:

show sequence

TGAGTTTATTGGGATTACTTACAGGGGCATGATTGTCATCAAAACACCCACCGAACCATTGGGG
GTGACCCTAGTGCTCCCCGCAGGACTGGCAGTGCCTGCCCGAATGTCTTCTTTCAGGGGTTGTC
TATAACCTTGAGAAGGGGCCTTGTGAATCTCACATGTTTCCGATTTTCTGGACCTGTAAGGTTA
ATTCTTGCTTAATTTTTGAGTCTCATGAAGCTCCCCCTCCCCCCTCCCACGAGGACCCGTTCCC
ACTAGGAGCCGACTGCTCGTGTACAAAAAGCAGTCCAGCACTCTGAATCTATCGGGTTAATTCC
AGGCCCTGGCTTAGTGGCTTTGGATCTACCTGAAGGTGCTGTCTAGGGGTGGGGACAGAGTGAA
GAGAGCAGGATGTTACTTCCTCTCAGAGGCCAGGAGCACACCTGCCGGCAGGTGCCCGCTACCC
TCCAGGCTTAGCAGGTTCAAGGAAGAAGCACCAGTCCGACTGGGCCTCTGCCAATCGGTATGGC
CTGCTGCTTGGAGTCTGCACTGCTGCTGTTGCTGCTGCTGCTGCTGCTGGGTGAGAACCTGTCT
CCTCCCTGGCCCCTGCCCTCTCTGACCCTGCTCCTCAGGCACAAAGTGAGATTGCAAGAGTGAC
ACCGGTATCAATGTGCCCCTGCTGTACAGTGCCGTGCACCCCATCTTTGGGTTCAGCTGAGCCA
CCCTTCACAAATCTAGCCTTACTATCCGTGCCCCAGGAACTTTCTTTTTCCTCTCCCCCTCCCC
TGCCCTCAATGTGCTCCTCAGAAGCTCCGGCTCTTGGGAGTTTTGAGTCCCACAGCTGATGTTC
TGCCTCCCAGCACTGCCTCTTCTCCACCAGGGGGATCACAGGAAAGGATTGCTCTGTGGGGTGT
GGTGTAGAGAATGGATACTGGTAAGCTTTAAGGCAGAGGAGACCTAAGAGCTGAGACATGCTAT
GTTGAGTGGAGCGTATTTACGGGTGCTGAATGAGAGGCCAGGCCAGGCAGTTTTATGGAGTCTT
GGATGCCAGAGAGGTAAGGAGGTGGGAAAGGAAGTACTATAAACCTGAATTTGGTGACTTGGCT
GGATTTGCATATGTCCAGTGCCAAGTTCAGACATAGCTGCCGGGTTTACTGATGCTACTCTCCC
AAGGTCAGGCATTCTATTTTCCCCTGAATGGCTTTTCATCTGTGACTTATCTACATCTTCACTG
AAACTACTGGTAAACGTCCAGGTCTGTCTCAGGGCGAAGTCCTATGGTCTGCCATTAAGCCTCA
GTGTCCTGTCAGGTGAAGCTGGGGAGGATGGAAGGGGTCCAGTAGACGCTCTGTGATGCATGTG
CCAGTTCTGGAGATGGTGGTGGAGGCTGAACCTGAGCTTCTGGGGAACCTCCGAGTACTGCCTC
CATTCACGACCTGGGTGGATATCCCTAGGACCTGCCCATGCCCGCTTCCTCAGGAAAAACGGGT
CACGCCTATGGGCCACACTCTCTCCCCTTGGGTTTGGGTATCTGCCCCCAGCCCCCGCCAAATT
CCGGGGTGTGGAATGTGGAGAACCAAGCACAGAGGGCTGCAGCCTGCCCTCCCCTCACCAGGGT
CAGCGAGCTCCACTGAGGGGAATCGCTGCGTGGAAGCAGCCGAGGCGTGCACAGCAGACGAGCA
GTGCCAGCAGCTGCGCTCCGAGTACGTGGCGCAATGCCTGGGCCGGGCGGGCTGGCGGGGACCC
GGGAGCTGCGTGCGCTCCCGCTGCCGCCGTGCCCTGCGCCGCTTCTTCGCCCGCGGGCCTCCGG
CGCTCACGCACGCGCTGCTCTTCTGCGGATGCGAAGGCCCCGCGTGCGCCGAGCGCCGGCGCCA
GACATTCGCGCCCGCCTGCGCGTTCTCCGGCCCCCAGCTGGCGCCACCTTCCTGCCTGAAGCCC
TTGGACCGCTGCGAGCGAAGCCGCCGGTGCCGGCCCCGTCTCTTTGCCTTCCAGGCCTCATGCG
CTCCCGCGCCCGGCTCCCGCGACGGCTGTCCGGAGGAGGGGGGCCCGCGGTGTCTGCGCGCCTA
CGCAGGCCTTGTAGGCACCGTGGTCACCCCCAACTACCTGGACAACGTGAGCGCGCGCGTTGCG
CCCTGGTGCGGCTGTGAGGCCAGCGGAAACCGGCGCGAAGAGTGCGAAGCCTTCCGCAAGCTTT
TTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCTCGCAACCATCAGTTCT
GCAGGACCAGTGGAACCCCTACCAGAATGCTGGGTGCTGTTTCCTGCGGGTGTCCTCGATGTCC
ATACTCACTGCCCTGGCTCTCCAGGCCCTGCTCTAATTAGGAAGGTGAACCATGGACAACACAG
CTGACTGCCATGTCTCTGGATTATGCTCACTGAACTGAAACTCCCTTGCCCTCAGGTCTGCTG

hide sequence

RefSeq Acc Id:

XM_006235043 ⟹ XP_006235105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,707,970 - 138,715,279 (-)	NCBI
mRatBN7.2	3	118,254,937 - 118,262,252 (-)	NCBI
Rnor_6.0	3	123,575,803 - 123,582,431 (-)	NCBI
Rnor_5.0	3	130,077,877 - 130,081,784 (-)	NCBI

Sequence:

show sequence

TGAGTTTATTGGGATTACTTACAGGGGCATGATTGTCATCAAAACACCCACCGAACCATTGGGG
GTGACCCTAGTGCTCCCCGCAGGACTGGCAGTGCCTGCCCGAATGTCTTCTTTCAGGGGTTGTC
TATAACCTTGAGAAGGGGCCTTGTGAATCTCACATGTTTCCGATTTTCTGGACCTGTAAGGTTA
ATTCTTGCTTAATTTTTGAGTCTCATGAAGCTCCCCCTCCCCCCTCCCACGAGGACCCGTTCCC
ACTAGGAGCCGACTGCTCGTGTACAAAAAGCAGTCCAGCACTCTGAATCTATCGGGTTAATTCC
AGGCCCTGGCTTAGTGGCTTTGGATCTACCTGAAGGTGCTGTCTAGGGGTGGGGACAGAGTGAA
GAGAGCAGGATGTTACTTCCTCTCAGAGGCCAGGAGCACACCTGCCGGCAGGTGCCCGCTACCC
TCCAGGCTTAGCAGGTTCAAGGAAGAAGCACCAGTCCGACTGGGCCTCTGCCAATCGGTATGGC
CTGCTGCTTGGAGTCTGCACTGCTGCTGTTGCTGCTGCTGCTGCTGCTGGGTGAGAACCTGTCT
CCTCCCTGGCCCCTGCCCTCTCTGACCCTGCTCCTCAGGCACAAAGTGAGATTGCAAGAGTGAC
ACCGGTATCAATGTGCCCCTGCTGTACAGTGCCGTGCACCCCATCTTTGGGTTCAGCTGAGCCA
CCCTTCACAAATCTAGCCTTACTATCCGTGCCCCAGGAACTTTCTTTTTCCTCTCCCCCTCCCC
TGCCCTCAATGTGCTCCTCAGAAGCTCCGGCTCTTGGGAGTTTTGAGTCCCACAGCTGATGTTC
TGCCTCCCAGCACTGCCTCTTCTCCACCAGGGGGATCACAGGAAAGGATTGCTCTGTGGGGTGT
GGTGTAGAGAATGGATACTGGTAAGCTTTAAGGCAGAGGAGACCTAAGAGCTGAGACATGCTAT
GTTGAGTGGAGCGTATTTACGGGTGCTGAATGAGAGGCCAGGCCAGGCAGTTTTATGGAGTCTT
GGATGCCAGAGAGGTAAGGAGGTGGGAAAGGAAGTACTATAAACCTGAATTTGGTGACTTGGCT
GGATTTGCATATGTCCAGTGCCAAGTTCAGACATAGCTGCCGGGTTTACTGATGCTACTCTCCC
AAGGTCAGGCATTCTATTTTCCCCTGAATGGCTTTTCATCTGTGACTTATCTACATCTTCACTG
AAACTACTGGTAAACGTCCAGGTCTGTCTCAGGGCGAAGTCCTATGGTCTGCCATTAAGCCTCA
GTGTCCTGTCAGGTGAAGCTGGGGAGGATGGAAGGGGTCCAGTAGACGCTCTGTGATGCATGTG
CCAGTTCTGGAGATGGTGGTGGAGGCTGAACCTGAGCTTCTGGGGAACCTCCGAGTACTGCCTC
CATTCACGACCTGGGTGGATATCCCTAGGACCTGCCCATGCCCGCTTCCTCAGGAAAAACGGGT
CACGCCTATGGGCCACACTCTCTCCCCTTGGGTTTGGGTATCTGCCCCCAGCCCCCGCCAAATT
CCGGGGTGTGGAATGTGGAGAACCAAGCACAGAGGGCTGCAGCCTGCCCTCCCCTCACCAGGGT
CAGCGAGCTCCACTGAGGGGAATCGCTGCGTGGAAGCAGCCGAGGCGTGCACAGCAGACGAGCA
GTGCCAGCAGCTGCGCTCCGAGTACGTGGCGCAATGCCTGGGCCGGGCGGGCTGGCGGGGACCC
GGGAGCTGCGTGCGCTCCCGCTGCCGCCGTGCCCTGCGCCGCTTCTTCGCCCGCGGGCCTCCGG
CGCTCACGCACGCGCTGCTCTTCTGCGGATGCGAAGGCCCCGCGTGCGCCGAGCGCCGGCGCCA
GACATTCGCGCCCGCCTGCGCGTTCTCCGGCCCCCAGCTGGCGCCACCTTCCTGCCTGAAGCCC
TTGGACCGCTGCGAGCGAAGCCGCCGGTGCCGGCCCCGTCTCTTTGCCTTCCAGGCCTCATGCG
CTCCCGCGCCCGGCTCCCGCGACGGCTGTCCGGAGGAGGGGGGCCCGCGGTGTCTGCGCGCCTA
CGCAGGCCTTGTAGGCACCGTGGTCACCCCCAACTACCTGGACAACGTGAGCGCGCGCGTTGCG
CCCTGGTGCGGCTGTGAGGCCAGCGGAAACCGGCGCGAAGAGTGCGAAGCCTTCCGCAAGCTTT
TTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCTCGCAACCATCAGTTCT
GCAGGACCAGTGGAACCCCTACCAGAATGCTGGGCAGGCCAAGGTGGAGGCCTGAGTGGCCTGA
GAAGAGATGGAGGCAGAAACGGTCCCCGTTTTGTCCCAAGGTGTCCTCGATGTCCATACTCACT
GCCCTGGCTCTCCAGGCCCTGCTCTAATTAGGAAGGTGAACCATGGACAACACAGCTGACTGCC
ATGTCTCTGGATTATGCTCACTGAACTGAAACTCCCTTGCCCTCAGGTCTGCTGTCCTTTGCAG
TTCTGGACCCCTGCATGGCTGTCTCCTGGACTGGGAGCTGGAGGCTAGGGCCCGACTGTTAGGT
TCCCCTGTTAGTAGGCATCTCACCTGTTTTCTTCACCATCCTTGAGATGATGGTAGATGATATT
TAGCACCTGTAGACAGGGCCTCATTGGGCCCCTTGGGCTTACAGAGCAGAACAGAGACTAGCCT
CCTGCTCTTAGAATTGGGTAGTGTTCTTTTCCAAGAAGACATGGCACTAAGGTGATCATATGAA
CAGACTGACAGACTGCAGTCTAAATACCCATGCCCCAGGGCCAGCGCTGACCTTGCTTGTCACC
TATGACATGGCGCTGTGTAGGGATTAAAGAGAGAGATTCAGGTCCCTCCTGCTGGACATCCCAC
TGGCCTCCCAGACTCTCCCAGCACCTGCAGTGGCACAGCAGCTCAATAAACCCATGTGCACTGA
GACCAGCCTGGCTTTCTGTCATCTGACCTAGAAATGTGGAGACCCGGGTGGCCTTGGGCACTCC
AGAACTACTCCTGAGTCTGAATACTGGAGAGTAAATATACCCATCTCGAACAGCAGCCAGCAGC
CGAGACTGAGTGCATGTGCTGCAGTTCCTTTGCAGACTCAAAGATGGGGTCTACTGGCTTATCA
GAGAGCTCTGAGAGGTCGAGCTGGATCGGGGAAATGGCCTGAGCAAACTGGCTCAGGCACATCT
GTCCCTATGGTGTCTGTCTCTATGGTGTAGACAGGGCCCCACTGAAGGGTAGGTAGGTGGGCAT
GCCACCATGCTGGGGCTTCATACTCTCTTAGCATCTATCTCAGCAGAGGTCGCTAGGAGGAAGG
CATCCTTCCCGACCAGCACTCGTGGATGAATAAGCTGATGGCCCAGTGTGAGTCATGGGCCTTT
TGCTGAGACGAGTCTCAGCCAGCAGGTCACCTGGTATAGGGGGGATGGTTTCTCAAAGGAGGTA
TTGGGCAGAGTGAGAGTGAAGCTGGGACCAAACTTCCCATTTCACAAAGAGAATTCCCTTCACC
TGTATGGAAATGGTCACCTGTGCACTCCTGATGGGGACAGGCAGAGTGTTGGAGCCAGAGAGTA
ATGACAGCATCACTCTGCCCTGCTTACCACAACTACAAAGTGGCTCCAGCGCAGGATGCAGGGT
CTGCCTGATGATTTCCTTACATGAGTGTGCTCAACTCCACTGCTCGTCTGACTTTGATATTTAG
CCTAAAATGTAGACATTAAAGTTCATGTGTGTGCCTGAGTATACATATATACCATATGTTTGCA
GGTGCCCACAGAGACCAGGAGGCTGTGGGCCATTTGATGTGGGTCCTGGGCATTGAACCCAGGC
CCTCTGCAATGCTCTTAACCACAGAGACATTTTTAAAAGTGGGAATGATTCTAAATAAAAATAC
AGTTCTGGATAGGAAGCGTGGCTATAAGCCTTCCAAAGCTAGTAGGAAGATGAGGTGGAAATAA
ATAGTCCAGTTCCACAGTTGGTGGTGGTCACTGTCCTGGGTGCTGGCAAGTGGGGCGGAAGAGT
CACTTCATACAGTAAAGGTGTGTTTACATTATAGATCTTGAGGAGGTCACCCAAGCAGGCCCTA
AACACACTCTCATGTTTCCTCTATGAAACCAGTGCGGAGAGAAGTAGTTCAAGGACAGGCAGAG
CTCGCAGTGATGCAGCCATAGGCAAGGAATATGTCTGAAGCCAGTGGAACATCAAGAAGGTACA
GTCTGAATCCCAGGAGCCTACAGAGGGGGGCCTAGTGCCGAGAACAGACTTTGTTTTTAAAACT
ACCAAGACTGGCCAATGCTACAAACATCCCAGGAAACTAGTAGGATTGCCTGTTTGGTTTTTGT
TACGTCTACCTAAAAAGGTCCTGACTTCCGTCTGGTGCTTTTGGCCCGGTGCCACCTTAAAGCT
GCCCTCCCCACCTACTCCCCATCACAGCTGTTGGCCTCTATCTTGCCAGGGAGTATCAGGCCTG
TGCCTGGGTCTCCGTTACCTGTTGTTGGTATTGGTTTCACGGCTGGCAGGTGGCACGGTGGGGC
TGAGGCAGAAAGGCAGGTGCTAGAAGCATTTGTGGATGTATCAGTGGAAACTTCATGGCTCATG
TATGTTCCTCTGGCGTGGGGCCCAGGTGCAAAGGTGTTGTGGAAACCACTCAAGTGAGTCAGGC
ATAGTCAAACTCATTAAAGAGCTCACTTTTACTGGAAATGTAGACACTGGCCAGTGAACCTGAT
AGGGAACAGAACGGCCACAAGAGGAGGGCAGAGGATGAGGGATGGTAATGAGAGAAACAGACTT
CACATCTCTCAGAAATGGCTGACCACCTGATTCAAGGGGCCAGCCTGAGCCCCAGAATGATTGA
TTGCCCTTGTTCCCTCCCCGCTTACACATACTCAGTCAGCTGGCAAGGAGATACAGGATGTTAA
CCCACTGTGTGCTCAGGTTGCTAGCTCTGAGTAGGTTCCTGTTTCTCTTGCTTTTGTAAGTGGA
GAAGTTATGAACCACATTCAGTTGACAAAACTCCAAAAGGCTAAAACAGTACAGTTTCCAGGGT
GGTTCCTGACACAACAGCCATGGGGCCACAGATTTTTCTAGGCTTTCCTGGGTTCTCTTACTGG
TCCACATTTCCTCATACTTAGATGAGTCAAGTGCTATCCACTCGATCTCAGTACTAAGGAGGTT
AAGGCAAAAAAGATGAGTTTGAGGCAGACTGATTTGTACAGTGAGATCTTTTCTCAAAATGCCA
AAAGAATGAACCAGATGAGTTCCCAGAACAAGGAAGGATATAGGGAAAGATTATAATGACAAAA
TAGAAAACTCACTGGGAAGGGCTAGAGCAAAAGAGAGCTCTGAACTCTCAGGTGGGTGCTGGGA
GTTTAGGCAGCAGTGTCCTCCTCTGAGTTGAAAATCTTCCTTCCTGGAGGCAAACTTCTCAAGA
CACATGATGTAAAAGAGAAGCACTGGGGACAGCATACCATGACAGGGACTGCCAGCAGTGAGCT
GGGATGGAGATATCTCAGAAGCCAGCGGGCAGCTCCTTGTAAAGTAAGGTGGCATCTGGGACCC
TGAAAAGCAGGAGACACATCCCTCCAGGGGATCCGCCATCTGAAATAGGAGGCTGCCCGCAGTA
GGCTGGGATGGAGACACCTCAGTAGCCCACAGTAGCTCTTTGT

hide sequence

RefSeq Acc Id:

XM_008762197 ⟹ XP_008760419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,707,970 - 138,715,279 (-)	NCBI
mRatBN7.2	3	118,254,937 - 118,262,252 (-)	NCBI
Rnor_6.0	3	123,575,803 - 123,582,431 (-)	NCBI

Sequence:

show sequence

TGAGTTTATTGGGATTACTTACAGGGGCATGATTGTCATCAAAACACCCACCGAACCATTGGGG
GTGACCCTAGTGCTCCCCGCAGGACTGGCAGTGCCTGCCCGAATGTCTTCTTTCAGGGGTTGTC
TATAACCTTGAGAAGGGGCCTTGTGAATCTCACATGTTTCCGATTTTCTGGACCTGTAAGGTTA
ATTCTTGCTTAATTTTTGAGTCTCATGAAGCTCCCCCTCCCCCCTCCCACGAGGACCCGTTCCC
ACTAGGAGCCGACTGCTCGTGTACAAAAAGCAGTCCAGCACTCTGAATCTATCGGGTTAATTCC
AGGCCCTGGCTTAGTGGCTTTGGATCTACCTGAAGGTGCTGTCTAGGGGTGGGGACAGAGTGAA
GAGAGCAGGATGTTACTTCCTCTCAGAGGCCAGGAGCACACCTGCCGGCAGGTGCCCGCTACCC
TCCAGGCTTAGCAGGTTCAAGGAAGAAGCACCAGTCCGACTGGGCCTCTGCCAATCGGTATGGC
CTGCTGCTTGGAGTCTGCACTGCTGCTGTTGCTGCTGCTGCTGCTGCTGGGTGAGAACCTGTCT
CCTCCCTGGCCCCTGCCCTCTCTGACCCTGCTCCTCAGGCACAAAGTGAGATTGCAAGAGTGAC
ACCGGTATCAATGTGCCCCTGCTGTACAGTGCCGTGCACCCCATCTTTGGGTTCAGCTGAGCCA
CCCTTCACAAATCTAGCCTTACTATCCGTGCCCCAGGAACTTTCTTTTTCCTCTCCCCCTCCCC
TGCCCTCAATGTGCTCCTCAGAAGCTCCGGCTCTTGGGAGTTTTGAGTCCCACAGCTGATGTTC
TGCCTCCCAGCACTGCCTCTTCTCCACCAGGGGGATCACAGGAAAGGATTGCTCTGTGGGGTGT
GGTGTAGAGAATGGATACTGGTAAGCTTTAAGGCAGAGGAGACCTAAGAGCTGAGACATGCTAT
GTTGAGTGGAGCGTATTTACGGGTGCTGAATGAGAGGCCAGGCCAGGCAGTTTTATGGAGTCTT
GGATGCCAGAGAGGGTCAGCGAGCTCCACTGAGGGGAATCGCTGCGTGGAAGCAGCCGAGGCGT
GCACAGCAGACGAGCAGTGCCAGCAGCTGCGCTCCGAGTACGTGGCGCAATGCCTGGGCCGGGC
GGGCTGGCGGGGACCCGGGAGCTGCGTGCGCTCCCGCTGCCGCCGTGCCCTGCGCCGCTTCTTC
GCCCGCGGGCCTCCGGCGCTCACGCACGCGCTGCTCTTCTGCGGATGCGAAGGCCCCGCGTGCG
CCGAGCGCCGGCGCCAGACATTCGCGCCCGCCTGCGCGTTCTCCGGCCCCCAGCTGGCGCCACC
TTCCTGCCTGAAGCCCTTGGACCGCTGCGAGCGAAGCCGCCGGTGCCGGCCCCGTCTCTTTGCC
TTCCAGGCCTCATGCGCTCCCGCGCCCGGCTCCCGCGACGGCTGTCCGGAGGAGGGGGGCCCGC
GGTGTCTGCGCGCCTACGCAGGCCTTGTAGGCACCGTGGTCACCCCCAACTACCTGGACAACGT
GAGCGCGCGCGTTGCGCCCTGGTGCGGCTGTGAGGCCAGCGGAAACCGGCGCGAAGAGTGCGAA
GCCTTCCGCAAGCTTTTTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCT
CGCAACCATCAGTTCTGCAGGACCAGTGGAACCCCTACCAGAATGCTGGGTGCTGTTTCCTGCG
GGTAGGTATGGGGAGAGGATGTGGAGTTGGCAGTTTCTCATCGTTCCCTTCTGTATTTACCCTT
CTCAGGCAGGCCAAGGTGGAGGCCTGAGTGGCCTGAGAAGAGATGGAGGCAGAAACGGTCCCCG
TTTTGTCCCAAGGTGTCCTCGATGTCCATACTCACTGCCCTGGCTCTCCAGGCCCTGCTCTAAT
TAGGAAGGTGAACCATGGACAACACAGCTGACTGCCATGTCTCTGGATTATGCTCACTGAACTG
AAACTCCCTTGCCCTCAGGTCTGCTGTCCTTTGCAGTTCTGGACCCCTGCATGGCTGTCTCCTG
GACTGGGAGCTGGAGGCTAGGGCCCGACTGTTAGGTTCCCCTGTTAGTAGGCATCTCACCTGTT
TTCTTCACCATCCTTGAGATGATGGTAGATGATATTTAGCACCTGTAGACAGGGCCTCATTGGG
CCCCTTGGGCTTACAGAGCAGAACAGAGACTAGCCTCCTGCTCTTAGAATTGGGTAGTGTTCTT
TTCCAAGAAGACATGGCACTAAGGTGATCATATGAACAGACTGACAGACTGCAGTCTAAATACC
CATGCCCCAGGGCCAGCGCTGACCTTGCTTGTCACCTATGACATGGCGCTGTGTAGGGATTAAA
GAGAGAGATTCAGGTCCCTCCTGCTGGACATCCCACTGGCCTCCCAGACTCTCCCAGCACCTGC
AGTGGCACAGCAGCTCAATAAACCCATGTGCACTGAGACCAGCCTGGCTTTCTGTCATCTGACC
TAGAAATGTGGAGACCCGGGTGGCCTTGGGCACTCCAGAACTACTCCTGAGTCTGAATACTGGA
GAGTAAATATACCCATCTCGAACAGCAGCCAGCAGCCGAGACTGAGTGCATGTGCTGCAGTTCC
TTTGCAGACTCAAAGATGGGGTCTACTGGCTTATCAGAGAGCTCTGAGAGGTCGAGCTGGATCG
GGGAAATGGCCTGAGCAAACTGGCTCAGGCACATCTGTCCCTATGGTGTCTGTCTCTATGGTGT
AGACAGGGCCCCACTGAAGGGTAGGTAGGTGGGCATGCCACCATGCTGGGGCTTCATACTCTCT
TAGCATCTATCTCAGCAGAGGTCGCTAGGAGGAAGGCATCCTTCCCGACCAGCACTCGTGGATG
AATAAGCTGATGGCCCAGTGTGAGTCATGGGCCTTTTGCTGAGACGAGTCTCAGCCAGCAGGTC
ACCTGGTATAGGGGGGATGGTTTCTCAAAGGAGGTATTGGGCAGAGTGAGAGTGAAGCTGGGAC
CAAACTTCCCATTTCACAAAGAGAATTCCCTTCACCTGTATGGAAATGGTCACCTGTGCACTCC
TGATGGGGACAGGCAGAGTGTTGGAGCCAGAGAGTAATGACAGCATCACTCTGCCCTGCTTACC
ACAACTACAAAGTGGCTCCAGCGCAGGATGCAGGGTCTGCCTGATGATTTCCTTACATGAGTGT
GCTCAACTCCACTGCTCGTCTGACTTTGATATTTAGCCTAAAATGTAGACATTAAAGTTCATGT
GTGTGCCTGAGTATACATATATACCATATGTTTGCAGGTGCCCACAGAGACCAGGAGGCTGTGG
GCCATTTGATGTGGGTCCTGGGCATTGAACCCAGGCCCTCTGCAATGCTCTTAACCACAGAGAC
ATTTTTAAAAGTGGGAATGATTCTAAATAAAAATACAGTTCTGGATAGGAAGCGTGGCTATAAG
CCTTCCAAAGCTAGTAGGAAGATGAGGTGGAAATAAATAGTCCAGTTCCACAGTTGGTGGTGGT
CACTGTCCTGGGTGCTGGCAAGTGGGGCGGAAGAGTCACTTCATACAGTAAAGGTGTGTTTACA
TTATAGATCTTGAGGAGGTCACCCAAGCAGGCCCTAAACACACTCTCATGTTTCCTCTATGAAA
CCAGTGCGGAGAGAAGTAGTTCAAGGACAGGCAGAGCTCGCAGTGATGCAGCCATAGGCAAGGA
ATATGTCTGAAGCCAGTGGAACATCAAGAAGGTACAGTCTGAATCCCAGGAGCCTACAGAGGGG
GGCCTAGTGCCGAGAACAGACTTTGTTTTTAAAACTACCAAGACTGGCCAATGCTACAAACATC
CCAGGAAACTAGTAGGATTGCCTGTTTGGTTTTTGTTACGTCTACCTAAAAAGGTCCTGACTTC
CGTCTGGTGCTTTTGGCCCGGTGCCACCTTAAAGCTGCCCTCCCCACCTACTCCCCATCACAGC
TGTTGGCCTCTATCTTGCCAGGGAGTATCAGGCCTGTGCCTGGGTCTCCGTTACCTGTTGTTGG
TATTGGTTTCACGGCTGGCAGGTGGCACGGTGGGGCTGAGGCAGAAAGGCAGGTGCTAGAAGCA
TTTGTGGATGTATCAGTGGAAACTTCATGGCTCATGTATGTTCCTCTGGCGTGGGGCCCAGGTG
CAAAGGTGTTGTGGAAACCACTCAAGTGAGTCAGGCATAGTCAAACTCATTAAAGAGCTCACTT
TTACTGGAAATGTAGACACTGGCCAGTGAACCTGATAGGGAACAGAACGGCCACAAGAGGAGGG
CAGAGGATGAGGGATGGTAATGAGAGAAACAGACTTCACATCTCTCAGAAATGGCTGACCACCT
GATTCAAGGGGCCAGCCTGAGCCCCAGAATGATTGATTGCCCTTGTTCCCTCCCCGCTTACACA
TACTCAGTCAGCTGGCAAGGAGATACAGGATGTTAACCCACTGTGTGCTCAGGTTGCTAGCTCT
GAGTAGGTTCCTGTTTCTCTTGCTTTTGTAAGTGGAGAAGTTATGAACCACATTCAGTTGACAA
AACTCCAAAAGGCTAAAACAGTACAGTTTCCAGGGTGGTTCCTGACACAACAGCCATGGGGCCA
CAGATTTTTCTAGGCTTTCCTGGGTTCTCTTACTGGTCCACATTTCCTCATACTTAGATGAGTC
AAGTGCTATCCACTCGATCTCAGTACTAAGGAGGTTAAGGCAAAAAAGATGAGTTTGAGGCAGA
CTGATTTGTACAGTGAGATCTTTTCTCAAAATGCCAAAAGAATGAACCAGATGAGTTCCCAGAA
CAAGGAAGGATATAGGGAAAGATTATAATGACAAAATAGAAAACTCACTGGGAAGGGCTAGAGC
AAAAGAGAGCTCTGAACTCTCAGGTGGGTGCTGGGAGTTTAGGCAGCAGTGTCCTCCTCTGAGT
TGAAAATCTTCCTTCCTGGAGGCAAACTTCTCAAGACACATGATGTAAAAGAGAAGCACTGGGG
ACAGCATACCATGACAGGGACTGCCAGCAGTGAGCTGGGATGGAGATATCTCAGAAGCCAGCGG
GCAGCTCCTTGTAAAGTAAGGTGGCATCTGGGACCCTGAAAAGCAGGAGACACATCCCTCCAGG
GGATCCGCCATCTGAAATAGGAGGCTGCCCGCAGTAGGCTGGGATGGAGACACCTCAGTAGCCC
ACAGTAGCTCTTTGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001381998	(Get FASTA)	NCBI Sequence Viewer
	NP_076457	(Get FASTA)	NCBI Sequence Viewer
	XP_006235103	(Get FASTA)	NCBI Sequence Viewer
	XP_006235104	(Get FASTA)	NCBI Sequence Viewer
	XP_006235105	(Get FASTA)	NCBI Sequence Viewer
	XP_008760419	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAC16420	(Get FASTA)	NCBI Sequence Viewer
	CAC16421	(Get FASTA)	NCBI Sequence Viewer
	EDL80217	(Get FASTA)	NCBI Sequence Viewer
	EDL80218	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000042875
	ENSRNOP00000042875.2
	ENSRNOP00000106510
	ENSRNOP00000109889
GenBank Protein	Q9EPI2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_076457 ⟸ NM_023967
- Peptide Label:	isoform 2 precursor
- UniProtKB:	Q9EPI3 (UniProtKB/Swiss-Prot), Q9EPI2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLSGAYLRVLNERPGQAVLWSLGCQRGSASSTEGNRCVEAAEACTADEQCQQLRSEYVAQCLGR AGWRGPGSCVRSRCRRALRRFFARGPPALTHALLFCGCEGPACAERRRQTFAPACAFSGPQLAP PSCLKPLDRCERSRRCRPRLFAFQASCAPAPGSRDGCPEEGGPRCLRAYAGLVGTVVTPNYLDN VSARVAPWCGCEASGNRREECEAFRKLFTRNPCLDGAIQAFDSSQPSVLQDQWNPYQNAGQAKV EA hide sequence

RefSeq Acc Id:

XP_006235105 ⟸ XM_006235043

- Peptide Label:

isoform X3

- Sequence:

show sequence

MHVPVLEMVVEAEPELLGNLRVLPPFTTWVDIPRTCPCPLPQEKRVTPMGHTLSPWVWVSAPSP
RQIPGCGMWRTKHRGLQPALPSPGSASSTEGNRCVEAAEACTADEQCQQLRSEYVAQCLGRAGW
RGPGSCVRSRCRRALRRFFARGPPALTHALLFCGCEGPACAERRRQTFAPACAFSGPQLAPPSC
LKPLDRCERSRRCRPRLFAFQASCAPAPGSRDGCPEEGGPRCLRAYAGLVGTVVTPNYLDNVSA
RVAPWCGCEASGNRREECEAFRKLFTRNPCLDGAIQAFDSSQPSVLQDQWNPYQNAGQAKVEA

hide sequence

RefSeq Acc Id:

XP_006235103 ⟸ XM_006235041

- Peptide Label:

isoform X1

- Sequence:

show sequence

MHVPVLEMVVEAEPELLGNLRVLPPFTTWVDIPRTCPCPLPQEKRVTPMGHTLSPWVWVSAPSP
RQIPGCGMWRTKHRGLQPALPSPGSASSTEGNRCVEAAEACTADEQCQQLRSEYVAQCLGRAGW
RGPGSCVRSRCRRALRRFFARGPPALTHALLFCGCEGPACAERRRQTFAPACAFSGPQLAPPSC
LKPLDRCERSRRCRPRLFAFQASCAPAPGSRDGCPEEGGPRCLRAYAGLVGTVVTPNYLDNVSA
RVAPWCGCEASGNRREECEAFRKLFTRNPCLDGAIQAFDSSQPSVLQDQWNPYQNAGCCFLRVG
MGRGCGVGSFSSFPSVFTLLRQAKVEA

hide sequence

RefSeq Acc Id:

XP_006235104 ⟸ XM_006235042

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHVPVLEMVVEAEPELLGNLRVLPPFTTWVDIPRTCPCPLPQEKRVTPMGHTLSPWVWVSAPSP
RQIPGCGMWRTKHRGLQPALPSPGSASSTEGNRCVEAAEACTADEQCQQLRSEYVAQCLGRAGW
RGPGSCVRSRCRRALRRFFARGPPALTHALLFCGCEGPACAERRRQTFAPACAFSGPQLAPPSC
LKPLDRCERSRRCRPRLFAFQASCAPAPGSRDGCPEEGGPRCLRAYAGLVGTVVTPNYLDNVSA
RVAPWCGCEASGNRREECEAFRKLFTRNPCLDGAIQAFDSSQPSVLQDQWNPYQNAGCCFLRVS
SMSILTALALQALL

hide sequence

RefSeq Acc Id:	XP_008760419 ⟸ XM_008762197
- Peptide Label:	isoform X4
- UniProtKB:	Q9EPI3 (UniProtKB/Swiss-Prot), Q9EPI2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLSGAYLRVLNERPGQAVLWSLGCQRGSASSTEGNRCVEAAEACTADEQCQQLRSEYVAQCLGR AGWRGPGSCVRSRCRRALRRFFARGPPALTHALLFCGCEGPACAERRRQTFAPACAFSGPQLAP PSCLKPLDRCERSRRCRPRLFAFQASCAPAPGSRDGCPEEGGPRCLRAYAGLVGTVVTPNYLDN VSARVAPWCGCEASGNRREECEAFRKLFTRNPCLDGAIQAFDSSQPSVLQDQWNPYQNAGCCFL RVGMGRGCGVGSFSSFPSVFTLLRQAKVEA hide sequence

Ensembl Acc Id:

ENSRNOP00000042875 ⟸ ENSRNOT00000047947

Ensembl Acc Id:

ENSRNOP00000095734 ⟸ ENSRNOT00000104014

RefSeq Acc Id:	NP_001381998 ⟸ NM_001395069
- Peptide Label:	isoform 1
- UniProtKB:	Q9EPI3 (UniProtKB/Swiss-Prot), Q9EPI2 (UniProtKB/Swiss-Prot), A6HQB7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109889 ⟸ ENSRNOT00000152461

Ensembl Acc Id:

ENSRNOP00000101052 ⟸ ENSRNOT00000148361

Ensembl Acc Id:

ENSRNOP00000106510 ⟸ ENSRNOT00000132677

Ensembl Acc Id:

ENSRNOP00000109532 ⟸ ENSRNOT00000153142

Protein Domains

GDNF/GAS1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9EPI2-F1-model_v2	AlphaFold	Q9EPI2	1-273	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620503	AgrOrtholog
BioCyc Gene	G2FUF-47832	BioCyc
Ensembl Genes	ENSRNOG00000021241	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000047947	ENTREZGENE
	ENSRNOT00000047947.3	UniProtKB/Swiss-Prot
	ENSRNOT00000132677	ENTREZGENE
	ENSRNOT00000152461	ENTREZGENE
Gene3D-CATH	GDNF binding domain	UniProtKB/Swiss-Prot
InterPro	GDNF/GAS1	UniProtKB/Swiss-Prot
	GDNF_alpha	UniProtKB/Swiss-Prot
	GDNF_rcpt	UniProtKB/Swiss-Prot
KEGG Report	rno:66023	UniProtKB/Swiss-Prot
NCBI Gene	66023	ENTREZGENE
PANTHER	GDNF FAMILY RECEPTOR ALPHA-4	UniProtKB/Swiss-Prot
	PTHR10269	UniProtKB/Swiss-Prot
Pfam	GDNF	UniProtKB/Swiss-Prot
PhenoGen	Gfra4	PhenoGen
PRINTS	GDNFRECEPTOR	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000021241	RatGTEx
SMART	GDNF	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF110035	UniProtKB/Swiss-Prot
UniProt	A0A8I6AS10_RAT	UniProtKB/TrEMBL
	A0ABK0KZW9_RAT	UniProtKB/TrEMBL
	A0ABK0LFH5_RAT	UniProtKB/TrEMBL
	A0ABK0LWI9_RAT	UniProtKB/TrEMBL
	A0ABK0M4Q0_RAT	UniProtKB/TrEMBL
	A6HQB6_RAT	UniProtKB/TrEMBL
	A6HQB7	ENTREZGENE, UniProtKB/TrEMBL
	GFRA4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9EPI3	ENTREZGENE
UniProt Secondary	Q9EPI3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-17	Gfra4	GDNF family receptor alpha 4	Gfra4	glial cell line derived neurotrophic factor family receptor alpha 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Gfra4	glial cell line derived neurotrophic factor family receptor alpha 4		neurotrophic factor receptor splice variant A (Gfra4 gene)	Name updated	1299863	APPROVED
2002-08-07	Gfra4	neurotrophic factor receptor splice variant A (Gfra4 gene)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	present in cortex, hippocampus, cerebellum, substantia nigra, olfactory bulb, and facial nucleus	727298

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar