GFRA4 (GDNF family receptor alpha 4) - Rat Genome Database

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Gene: GFRA4 (GDNF family receptor alpha 4) Chlorocebus sabaeus
Analyze
Symbol: GFRA4
Name: GDNF family receptor alpha 4
RGD ID: 40900785
Description: ENCODES a protein that exhibits glial cell-derived neurotrophic factor receptor activity (ortholog); INVOLVED IN glial cell-derived neurotrophic factor receptor signaling pathway (ortholog); negative regulation of ossification (ortholog); ossification (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GDNF family receptor alpha-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366607110,096,841 - 10,106,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GFRA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366607110,096,841 - 10,106,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GFRA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38203,659,248 - 3,663,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl203,659,248 - 3,663,399 (-)EnsemblGRCh38hg38GRCh38
GRCh37203,639,895 - 3,644,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,587,939 - 3,592,046 (-)NCBINCBI36Build 36hg18NCBI36
Build 34203,587,938 - 3,592,046NCBI
Celera203,701,823 - 3,705,927 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef203,588,274 - 3,592,378 (-)NCBIHuRef
CHM1_1203,640,254 - 3,644,358 (-)NCBICHM1_1
T2T-CHM13v2.0203,690,188 - 3,694,336 (-)NCBIT2T-CHM13v2.0
Gfra4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,881,552 - 130,885,008 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,881,552 - 130,885,008 (-)EnsemblGRCm39 Ensembl
GRCm382131,039,632 - 131,043,088 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,039,632 - 131,043,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,865,912 - 130,868,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362130,731,617 - 130,734,123 (-)NCBIMGSCv36mm8
Celera2132,264,900 - 132,267,812 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.26NCBI
Gfra4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,707,970 - 138,715,279 (-)NCBIGRCr8
mRatBN7.23118,254,937 - 118,262,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3118,255,402 - 118,258,329 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3122,149,255 - 122,152,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03130,747,254 - 130,750,240 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,405,366 - 128,408,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,573,394 - 123,582,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,578,997 - 123,581,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03130,077,877 - 130,081,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,712,252 - 118,714,773 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13118,617,824 - 118,620,346 (-)NCBI
Celera3117,065,274 - 117,067,795 (-)NCBICelera
Cytogenetic Map3q36NCBI
Gfra4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541514,513,183 - 14,514,140 (-)NCBIChiLan1.0ChiLan1.0
GFRA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,621,663 - 4,626,719 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1204,618,488 - 4,623,544 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0203,740,538 - 3,745,601 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1203,499,690 - 3,503,081 (-)NCBIpanpan1.1PanPan1.1panPan2
GFRA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,685,888 - 17,690,747 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,686,817 - 17,690,056 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,515,732 - 17,520,613 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02418,104,690 - 18,109,573 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2418,105,641 - 18,109,587 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12417,699,436 - 17,704,303 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02417,811,187 - 17,816,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02418,138,277 - 18,143,160 (+)NCBIUU_Cfam_GSD_1.0
Gfra4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,703,881 - 166,708,001 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648515,135,245 - 15,139,000 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648515,135,245 - 15,139,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GFRA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,040,235 - 32,046,105 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,040,183 - 32,044,396 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,367,615 - 36,372,394 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Gfra4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247414,753,792 - 4,757,642 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247414,752,376 - 4,757,642 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_037990594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_037990594   ⟹   XP_037846522
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607110,096,841 - 10,106,162 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037846522 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037846522   ⟸   XM_037990594


Additional Information

Database Acc Id Source(s)
NCBI Gene GFRA4 ENTREZGENE