Rbbp7 (RB binding protein 7, chromatin remodeling factor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rbbp7 (RB binding protein 7, chromatin remodeling factor) Rattus norvegicus
Analyze
Symbol: Rbbp7
Name: RB binding protein 7, chromatin remodeling factor
RGD ID: 620125
Description: Predicted to enable RNA binding activity and histone binding activity. Involved in response to steroid hormone. Predicted to be located in chromosome, telomeric region. Predicted to be part of ESC/E(Z) complex; NURF complex; and NuRD complex. Predicted to be active in nucleus. Orthologous to human RBBP7 (RB binding protein 7, chromatin remodeling factor); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: histone-binding protein RBBP7; nucleosome-remodeling factor subunit RBAP46; RBBP-7; retinoblastoma binding protein 7; retinoblastoma-binding protein 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X35,544,873 - 35,563,030 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX35,544,873 - 35,563,030 (-)EnsemblGRCr8
mRatBN7.2X31,913,080 - 31,931,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX31,913,081 - 31,931,226 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX32,947,379 - 32,965,537 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X36,382,894 - 36,401,051 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X32,571,785 - 32,589,943 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X33,648,682 - 33,665,821 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,648,682 - 33,665,821 (-)Ensemblrn6Rnor6.0
Rnor_5.0X33,995,673 - 34,012,812 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X52,669,703 - 52,688,332 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX32,216,768 - 32,234,925 (-)NCBICelera
RGSC_v3.1X52,723,171 - 52,741,801 (-)NCBI
Cytogenetic MapXq14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
afimoxifene  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dibenzofurans  (ISO)
dicrotophos  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
methoxyacetic acid  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
nefazodone  (EXP)
nickel subsulfide  (EXP)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
promegestone  (ISO)
raloxifene  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulindac  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
uranium atom  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome, telomeric region  (IEA,ISO)
ESC/E(Z) complex  (IBA,IEA,ISO,ISS)
histone deacetylase complex  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
NuRD complex  (IBA,IEA,ISO,ISS)

Molecular Function
histone binding  (IBA,IEA,ISO)
protein binding  (ISO)
RNA binding  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. The nucleosome remodeling and deacetylase complex in development and disease. Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Persistent changes in gene expression induced by estrogen and progesterone in the rat mammary gland. Ginger MR, etal., Mol Endocrinol 2001 Nov;15(11):1993-2009.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
6. SET for life: biochemical activities and biological functions of SET domain-containing proteins. Herz HM, etal., Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Epub 2013 Oct 20.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. The zinc finger and C-terminal domains of MTA proteins are required for FOG-2-mediated transcriptional repression via the NuRD complex. Roche AE, etal., J Mol Cell Cardiol. 2008 Feb;44(2):352-60. Epub 2007 Nov 12.
14. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
15. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
16. Characterization of the gene encoding mouse retinoblastoma binding protein-7, a component of chromatin-remodeling complexes. Yang J, etal., Genomics 2002 Oct;80(4):407-15.
Additional References at PubMed
PMID:7503932   PMID:9765217   PMID:14645126   PMID:15489334   PMID:16462733   PMID:16791210   PMID:19644445   PMID:20075857   PMID:22720776   PMID:22770845   PMID:22911650   PMID:22926524  
PMID:23104054   PMID:23273982   PMID:24625528   PMID:24991957   PMID:31451685  


Genomics

Comparative Map Data
Rbbp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X35,544,873 - 35,563,030 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX35,544,873 - 35,563,030 (-)EnsemblGRCr8
mRatBN7.2X31,913,080 - 31,931,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX31,913,081 - 31,931,226 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX32,947,379 - 32,965,537 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X36,382,894 - 36,401,051 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X32,571,785 - 32,589,943 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X33,648,682 - 33,665,821 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,648,682 - 33,665,821 (-)Ensemblrn6Rnor6.0
Rnor_5.0X33,995,673 - 34,012,812 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X52,669,703 - 52,688,332 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX32,216,768 - 32,234,925 (-)NCBICelera
RGSC_v3.1X52,723,171 - 52,741,801 (-)NCBI
Cytogenetic MapXq14NCBI
RBBP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,844,341 - 16,870,362 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,839,283 - 16,870,372 (-)Ensemblhg38GRCh38
GRCh37X16,862,464 - 16,888,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,772,698 - 16,798,386 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X16,622,433 - 16,648,114NCBI
CeleraX20,981,704 - 21,007,178 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX14,623,294 - 14,649,232 (-)NCBIHuRef
CHM1_1X16,893,198 - 16,918,914 (-)NCBICHM1_1
T2T-CHM13v2.0X16,426,872 - 16,452,877 (-)NCBIT2T-CHM13v2.0
Rbbp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,543,368 - 161,562,086 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,543,398 - 161,562,088 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X162,760,372 - 162,779,090 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,760,402 - 162,779,092 (+)Ensemblmm10GRCm38
MGSCv37X159,198,304 - 159,217,022 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X158,104,564 - 158,123,195 (+)NCBIMGSCv36mm8
MGSCv36X139,886,392 - 139,905,148 (+)NCBIMGSCv36mm8
CeleraX145,966,574 - 146,004,291 (+)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX74.97NCBI
Rbbp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555191,459,511 - 1,482,699 (+)Ensembl
ChiLan1.0NW_0049555191,460,199 - 1,482,699 (+)NCBIChiLan1.0ChiLan1.0
RBBP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X18,640,519 - 18,667,013 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X18,643,907 - 18,669,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X9,465,579 - 9,491,096 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X16,834,802 - 16,859,575 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX16,834,811 - 16,859,575 (-)EnsemblpanPan2panpan1.1
RBBP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X12,981,852 - 13,006,049 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX12,981,860 - 13,006,045 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX12,833,201 - 12,857,396 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
Rbbp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X6,107,735 - 6,133,089 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364706,104,510 - 6,133,185 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364706,107,754 - 6,133,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBBP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX13,280,977 - 13,317,031 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X13,293,278 - 13,317,074 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X14,288,824 - 14,312,580 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBBP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,268,650 - 15,294,648 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX15,269,026 - 15,294,592 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605617,122,978 - 17,149,020 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbbp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248291,544,788 - 1,567,425 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248291,544,781 - 1,567,301 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbbp7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X23,593,303 - 23,608,584 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbbp7
41 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:64
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000066676
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2447036044931007Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2447036045082063Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat

Markers in Region
AI173248  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,913,353 - 31,913,471 (+)MAPPERmRatBN7.2
Rnor_6.0X33,648,948 - 33,649,065NCBIRnor6.0
Rnor_5.0X33,995,939 - 33,996,056UniSTSRnor5.0
RGSC_v3.4X52,669,969 - 52,670,086UniSTSRGSC3.4
CeleraX32,217,034 - 32,217,151UniSTS
Cytogenetic MapXq21UniSTS
RH132537  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,913,154 - 31,913,359 (+)MAPPERmRatBN7.2
Rnor_6.0X33,648,749 - 33,648,953NCBIRnor6.0
Rnor_5.0X33,995,740 - 33,995,944UniSTSRnor5.0
RGSC_v3.4X52,669,770 - 52,669,974UniSTSRGSC3.4
CeleraX32,216,835 - 32,217,039UniSTS
RH 3.4 MapX455.3UniSTS
Cytogenetic MapXq21UniSTS
RH136436  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,913,158 - 31,913,358 (+)MAPPERmRatBN7.2
Rnor_6.0X33,648,753 - 33,648,952NCBIRnor6.0
Rnor_5.0X33,995,744 - 33,995,943UniSTSRnor5.0
RGSC_v3.4X52,669,774 - 52,669,973UniSTSRGSC3.4
CeleraX32,216,839 - 32,217,038UniSTS
Cytogenetic MapXq21UniSTS
RH124898  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,913,142 - 31,913,367 (+)MAPPERmRatBN7.2
Rnor_6.0X33,648,737 - 33,648,961NCBIRnor6.0
Rnor_5.0X33,995,728 - 33,995,952UniSTSRnor5.0
RGSC_v3.4X52,669,758 - 52,669,982UniSTSRGSC3.4
CeleraX32,216,823 - 32,217,047UniSTS
Cytogenetic MapXq21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000066676   ⟹   ENSRNOP00000062148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX35,544,873 - 35,563,030 (-)Ensembl
mRatBN7.2 EnsemblX31,913,081 - 31,931,226 (-)Ensembl
Rnor_6.0 EnsemblX33,648,682 - 33,665,821 (-)Ensembl
RefSeq Acc Id: NM_031816   ⟹   NP_114004
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X35,544,873 - 35,563,030 (-)NCBI
mRatBN7.2X31,913,088 - 31,931,245 (-)NCBI
Rnor_6.0X33,648,682 - 33,665,821 (-)NCBI
Rnor_5.0X33,995,673 - 34,012,812 (-)NCBI
RGSC_v3.4X52,669,703 - 52,688,332 (-)RGD
CeleraX32,216,768 - 32,234,925 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_114004 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC36349 (Get FASTA)   NCBI Sequence Viewer  
  AAH62012 (Get FASTA)   NCBI Sequence Viewer  
  EDL90490 (Get FASTA)   NCBI Sequence Viewer  
  EDL90491 (Get FASTA)   NCBI Sequence Viewer  
  EDL90492 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000062148
  ENSRNOP00000062148.1
GenBank Protein Q71UF4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_114004   ⟸   NM_031816
- UniProtKB: Q71UF4 (UniProtKB/Swiss-Prot),   A6K2N8 (UniProtKB/TrEMBL),   A0A8I6AQI0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062148   ⟸   ENSRNOT00000066676
Protein Domains
Histone-binding protein RBBP4-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q71UF4-F1-model_v2 AlphaFold Q71UF4 1-425 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701806
Promoter ID:EPDNEW_R12330
Type:initiation region
Name:Rbbp7_1
Description:RB binding protein 7, chromatin remodeling factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X33,665,774 - 33,665,834EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620125 AgrOrtholog
BioCyc Gene G2FUF-2535 BioCyc
Ensembl Genes ENSRNOG00000005157 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000066676 ENTREZGENE
  ENSRNOT00000066676.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621292 IMAGE-MGC_LOAD
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot
  Histone-bd_RBBP4_N UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_CS UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
  WD_repeat_RBAP46/RBAP48/MSI1 UniProtKB/Swiss-Prot
KEGG Report rno:83712 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72383 IMAGE-MGC_LOAD
NCBI Gene 83712 ENTREZGENE
PANTHER WD40 REPEAT FAMILY UniProtKB/Swiss-Prot
Pfam CAF1C_H4-bd UniProtKB/Swiss-Prot
  WD40 UniProtKB/Swiss-Prot
PhenoGen Rbbp7 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005157 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A8I6AQI0 ENTREZGENE, UniProtKB/TrEMBL
  A6K2N8 ENTREZGENE, UniProtKB/TrEMBL
  A6K2N9_RAT UniProtKB/TrEMBL
  A6K2P0_RAT UniProtKB/TrEMBL
  Q71UF4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-03 Rbbp7  RB binding protein 7, chromatin remodeling factor  Rbbp7  retinoblastoma binding protein 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Rbbp7  retinoblastoma binding protein 7      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rbbp7  retinoblastoma binding protein 7      Symbol and Name status set to provisional 70820 PROVISIONAL