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Gene: Rph3a (rabphilin 3A) Rattus norvegicus

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Symbol:

Rph3a

Name:

rabphilin 3A

RGD ID:

620073

Description:

Enables several functions, including anion binding activity; calcium-dependent phospholipid binding activity; and metal ion binding activity. Involved in dendritic spine organization and regulation of NMDA receptor activity. Located in dendritic spine; postsynaptic membrane; and secretory vesicle. Is extrinsic component of membrane. Part of protein-containing complex. Is active in cholinergic synapse and neuromuscular junction. Is extrinsic component of synaptic vesicle membrane. Orthologous to human RPH3A (rabphilin 3A); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

exophilin-1; rabphilin 3A homolog; rabphilin 3A homolog (mouse); rabphilin-3A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPH3A (rabphilin 3A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rph3a (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rph3a (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPH3A (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPH3A (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rph3a (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPH3A (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPH3A (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rph3a (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rph3a (rabphilin 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GIT2 (GIT ArfGAP 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Rph3a (rabphilin 3A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RPH3A (rabphilin 3A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rph3ab (rabphilin 3A homolog (mouse), b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rph3aa (rabphilin 3A homolog (mouse), a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	rph3aa (rabphilin 3A homolog (mouse), a)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rph	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rph	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbf-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rph3a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rph3a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Allele / Splice:

Rph3a^{Tn(sb-T2/Bart3)2.104Mcwi}

Genetic Models:

F344-Rph3a^{Tn(sb-T2/Bart3)2.104Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	41,203,004 - 41,279,536 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	41,200,089 - 41,279,531 (+)	Ensembl				GRCr8
mRatBN7.2	12	35,542,389 - 35,618,901 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	35,542,728 - 35,617,592 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	36,721,473 - 36,796,064 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	37,332,667 - 37,407,266 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	36,385,126 - 36,459,717 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	41,073,296 - 41,149,799 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	41,073,824 - 41,148,490 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	42,938,832 - 43,014,142 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	36,678,613 - 36,753,316 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	37,205,019 - 37,281,023 (+)	NCBI		Celera
RGSC_v3.1	12	36,542,000 - 36,616,704 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

Dibutyl phosphate (ISO)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (EXP)

L-ascorbic acid (ISO)

lead(0) (ISO)

malathion (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

morphine (ISO)

N-nitrosodiethylamine (EXP)

nicotine (ISO)

Nonylphenol (EXP)

phenethyl caffeate (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

venlafaxine hydrochloride (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium-dependent activation of synaptic vesicle fusion (IBA)

dendritic spine organization (IMP)

intracellular protein transport (IEA)

positive regulation of calcium ion-dependent exocytosis (IBA)

protein transport (IEA)

regulation of NMDA receptor activity (IMP)

spontaneous neurotransmitter secretion (ISO)

synaptic vesicle priming (IEA,ISO)

Cellular Component

cholinergic synapse (IDA)

cytoplasmic vesicle (IEA)

dendritic spine (IDA,IEA)

extrinsic component of membrane (IDA)

extrinsic component of synaptic vesicle membrane (EXP,IBA,IDA,IEA,IEP)

membrane (IEA)

neuromuscular junction (IDA)

neuron projection (IBA)

postsynaptic membrane (IBA,IDA,IEA)

protein-containing complex (IDA)

secretory granule (IDA)

synapse (IBA)

synaptic vesicle (IDA)

synaptic vesicle membrane (IDA,IEA)

transport vesicle membrane (IEA)

Molecular Function

calcium ion binding (IDA,TAS)

calcium-dependent phospholipid binding (IDA)

inositol 1,4,5 trisphosphate binding (IDA)

lipid binding (IEA)

metal ion binding (IEA)

phosphate ion binding (IDA)

phosphatidylinositol-4,5-bisphosphate binding (IDA)

phospholipid binding (TAS)

protein binding (IPI,ISO)

protein-containing complex binding (IDA)

selenium binding (IDA)

small GTPase binding (IEA)

zinc ion binding (IDA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Structural determinants for Ca2+ and phosphatidylinositol 4,5-bisphosphate binding by the C2A domain of rabphilin-3A.	Coudevylle N, etal., J Biol Chem. 2008 Dec 19;283(51):35918-28. Epub 2008 Oct 21.
2.	Rabphilin regulates SNARE-dependent re-priming of synaptic vesicles for fusion.	Deak F, etal., EMBO J. 2006 Jun 21;25(12):2856-66. Epub 2006 Jun 8.
3.	Developmental regulation and specific brain distribution of phosphorabphilin.	Foletti DL and Scheller RH, J Neurosci. 2001 Aug 1;21(15):5461-72.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	The Rab27 effector Rabphilin, unlike Granuphilin and Noc2, rapidly exchanges between secretory granules and cytosol in PC12 cells.	Handley MT and Burgoyne RD, Biochem Biophys Res Commun. 2008 Aug 22;373(2):275-81. Epub 2008 Jun 23.
6.	Identification of a rabphilin-3A-interacting protein as GTP cyclohydrolase I in PC12 cells.	Imazumi K, etal., Biochem Biophys Res Commun. 1994 Dec 15;205(2):1409-16.
7.	Synaptic targeting of rabphilin-3A, a synaptic vesicle Ca2+/phospholipid-binding protein, depends on rab3A/3C.	Li C, etal., Neuron 1994 Oct;13(4):885-98.
8.	Characterization of rabphilin phosphorylation using phospho-specific antibodies.	Lonart G and Sudhof TC, Neuropharmacology. 2001 Nov;41(6):643-9.
9.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
10.	Localization of Rabphilin-3A on the synaptic vesicle.	Mizoguchi A, etal., Biochem Biophys Res Commun. 1994 Aug 15;202(3):1235-43. doi: 10.1006/bbrc.1994.2063.
11.	The C2A-C2B linker defines the high affinity Ca(2+) binding mode of rabphilin-3A.	Montaville P, etal., J Biol Chem. 2007 Feb 16;282(7):5015-25. Epub 2006 Dec 13.
12.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
13.	Structural basis of Rab effector specificity: crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A.	Ostermeier C and Brunger AT, Cell. 1999 Feb 5;96(3):363-74.
14.	GOA pipeline	RGD automated data pipeline
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
17.	Rab3 reversibly recruits rabphilin to synaptic vesicles by a mechanism analogous to raf recruitment by ras.	Stahl B, etal., EMBO J. 1996 Apr 15;15(8):1799-809.
18.	Rabphilin 3A retains NMDA receptors at synaptic sites through interaction with GluN2A/PSD-95 complex.	Stanic J, etal., Nat Commun. 2015 Dec 18;6:10181. doi: 10.1038/ncomms10181.
19.	Molecular anatomy of a trafficking organelle.	Takamori S, etal., Cell. 2006 Nov 17;127(4):831-46.
20.	Novel localization of Rab3D in rat intestinal goblet cells and Brunner's gland acinar cells suggests a role in early Golgi trafficking.	Valentijn JA, etal., Am J Physiol Gastrointest Liver Physiol. 2007 Jul;293(1):G165-77. Epub 2007 Mar 29.
21.	Identification of a novel protein complex containing annexin A4, rabphilin and synaptotagmin.	Willshaw A, etal., FEBS Lett. 2004 Feb 13;559(1-3):13-21.

Additional References at PubMed

PMID:8943213	PMID:12937130	PMID:14722103	PMID:16043482	PMID:16790935	PMID:17156129	PMID:18434502	PMID:18986604	PMID:19292454	PMID:21521611	PMID:28131823	PMID:28823933
PMID:29476059	PMID:30053369	PMID:32357304	PMID:35626653	PMID:36173100

Genomics

Comparative Map Data

Rph3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	41,203,004 - 41,279,536 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	41,200,089 - 41,279,531 (+)	Ensembl				GRCr8
mRatBN7.2	12	35,542,389 - 35,618,901 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	35,542,728 - 35,617,592 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	36,721,473 - 36,796,064 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	37,332,667 - 37,407,266 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	36,385,126 - 36,459,717 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	41,073,296 - 41,149,799 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	41,073,824 - 41,148,490 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	42,938,832 - 43,014,142 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	36,678,613 - 36,753,316 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	37,205,019 - 37,281,023 (+)	NCBI		Celera
RGSC_v3.1	12	36,542,000 - 36,616,704 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

RPH3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	112,575,236 - 112,898,881 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	112,570,380 - 112,898,881 (+)	Ensembl			hg38	GRCh38
GRCh37	12	113,013,040 - 113,336,686 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	111,714,125 - 111,819,631 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	111,692,461 - 111,797,964	NCBI
Celera	12	112,856,609 - 112,963,778 (+)	NCBI		Celera
Cytogenetic Map	12	q24.13	NCBI
HuRef	12	110,241,984 - 110,349,225 (+)	NCBI		HuRef
CHM1_1	12	113,197,984 - 113,305,112 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	112,552,138 - 112,875,587 (+)	NCBI		T2T-CHM13v2.0

Rph3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	121,078,562 - 121,184,249 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	121,078,562 - 121,148,155 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	120,940,499 - 121,010,116 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	120,940,499 - 121,010,092 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	121,390,508 - 121,459,527 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	121,201,116 - 121,270,135 (-)	NCBI		MGSCv36	mm8
Celera	5	118,026,782 - 118,095,964 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	61.17	NCBI

Rph3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	9,225,845 - 9,312,695 (+)	Ensembl
ChiLan1.0	NW_004955482	9,190,137 - 9,312,596 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPH3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	120,667,296 - 120,988,275 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	120,663,693 - 120,984,671 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	110,393,495 - 110,504,099 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	113,766,871 - 113,888,805 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	113,815,437 - 113,886,701 (+)	Ensembl			panPan2	panpan1.1

RPH3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	10,147,910 - 10,379,742 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	10,280,850 - 10,378,061 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	10,232,289 - 10,497,349 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	10,490,689 - 10,619,145 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	10,405,323 - 10,619,145 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	10,327,807 - 10,592,901 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	10,527,647 - 10,656,100 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	10,439,243 - 10,704,531 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rph3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	148,328,663 - 148,413,066 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	2,857,732 - 2,911,517 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	2,827,574 - 2,911,955 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPH3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	38,867,099 - 38,969,169 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	38,867,095 - 39,162,052 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	41,316,538 - 41,482,994 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPH3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	107,818,594 - 108,155,546 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	108,077,043 - 108,155,539 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	136,930,533 - 137,267,850 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rph3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	19,441,226 - 19,495,798 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	19,439,365 - 19,657,865 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rph3a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	32,813,888 - 32,888,201 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rph3a
363 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	49
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000001844
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

D12Got81

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	35,555,366 - 35,555,558 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	41,086,270 - 41,086,461	NCBI	Rnor6.0
Rnor_5.0	12	42,951,800 - 42,951,991	UniSTS	Rnor5.0
RGSC_v3.4	12	36,691,083 - 36,691,275	RGD	RGSC3.4
RGSC_v3.4	12	36,691,084 - 36,691,275	UniSTS	RGSC3.4
Celera	12	37,218,170 - 37,218,363	UniSTS
RGSC_v3.1	12	36,554,472 - 36,554,663	RGD
RH 3.4 Map	12	617.9	UniSTS
RH 3.4 Map	12	617.9	RGD
Cytogenetic Map	12	q16	UniSTS

Genetic Models

This gene Rph3a is modified in the following models/strains:

F344-Rph3a^{Tn(sb-T2/Bart3)2.104Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	6	41	153	60	52	31	34	31	5	164	102	8	130	16	87	21	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001443856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_133518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U12571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001844 ⟹ ENSRNOP00000001844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	41,203,485 - 41,279,531 (+)	Ensembl
mRatBN7.2 Ensembl	12	35,542,728 - 35,617,592 (+)	Ensembl
Rnor_6.0 Ensembl	12	41,073,824 - 41,148,490 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106706 ⟹ ENSRNOP00000086545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	41,200,089 - 41,279,531 (+)	Ensembl
mRatBN7.2 Ensembl	12	35,542,728 - 35,617,592 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119612 ⟹ ENSRNOP00000092026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	41,200,089 - 41,279,531 (+)	Ensembl
mRatBN7.2 Ensembl	12	35,569,862 - 35,617,592 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143871 ⟹ ENSRNOP00000107113

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	41,226,476 - 41,279,531 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151514 ⟹ ENSRNOP00000103857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	41,200,089 - 41,279,531 (+)	Ensembl

RefSeq Acc Id:

NM_133518 ⟹ NP_598202

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,203,562 - 41,278,227 (+)	NCBI
mRatBN7.2	12	35,542,919 - 35,617,592 (+)	NCBI
Rnor_6.0	12	41,073,824 - 41,148,490 (+)	NCBI
Rnor_5.0	12	42,938,832 - 43,014,142 (+)	NCBI
RGSC_v3.4	12	36,678,613 - 36,753,316 (+)	RGD
Celera	12	37,205,019 - 37,281,023 (+)	RGD

Sequence:

show sequence

CGTTGCACTTCGCTGCCCAGAGAGGGAGAGAGGAAAGAGACGAGGGGAGAGAAAGAGAGACTTA
CAAAACCTTCCTTCCATGTGGAGTGGTCTGAGTGAATCACTGCCCACCGTTGTAGACTCCAACT
GTACTTAGTTTTCTCCTTTGACGGGGGCATATCTGCTGGTCTTTCAAGCCAAGTCGCTGGCACT
TAACATCTCCCCCCGGCAGGAGGTTGGCAAGAATTTGGCTCACGCCTTCTGCTGCAATCCTCCG
TTGTCTTGGTGTGCCAGCCTTCCACCATGACTGACACTGTGGTGAACCGTTGGATGTACCCTGG
TGATGGCCCACTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCATCCTGGA
GCACAGACGGACAGGCAGAGGAAGCAGGAAGAACTGACAGACGAGGAGAAGGAGATAATCAACC
GGGTGATAGCTCGGGCAGAGAAGATGGAAACCATGGAGCAGGAGCGCATCGGGCGCCTGGTGGA
CCGTCTGGAGACCATGAGGAAGAATGTAGCTGGAGATGGTGTGAACCGTTGCATCCTGTGCGGG
GAACAGCTGGGCATGCTGGGCTCTGCGTGTGTCGTGTGTGAAGACTGTAAGAAGAATGTCTGCA
CCAAGTGTGGGGTGGAGACCTCCAACAACCGTCCGCATCCAGTATGGCTCTGTAAGATCTGCCT
TGAGCAGAGAGAGGTCTGGAAGCGCTCGGGAGCATGGTTCTTCAAGGGTTTCCCAAAACAGGTC
CTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAGCCGGCCACCC
AGGAGCAGCCTACACCCGAGTCCAGGCATCCAGCCAGAGCTCCAGCTCGAGGTGACATGGAGGA
CAGGAGGGCCCCAGGACAGAAGCCAGGCCCTGACCTCACCTCTGCTCCTGGACGAGGAAGCCAT
GGGCCTCCCACACGCAGGGCCTCTGAGGCCCGGATGAGTACAACCACCCGTGATTCTGAGGGCT
GGGACCATGGTCATGGTGGGGGTGCTGGAGACACCAGCCGGAGCCCAGGAGGTGAGCAAGGTTT
GAGGCGAGCTAACTCAGTCCAGGCCTCCCGCCCAGCTCCAGCCTCCATGCCAAGCCCGGCACCT
CCTCAGCCCGTGCAGCCAGGGCCCCCTGGGGGCAGCAGGGCCGCTCCTGGGCCGGGACGCTTTC
CAGAGCAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATCCAGGGGCTGTTGCCCCAGCCCG
GGAGGAGAGGACAGGACCCACAGGGGGCTTCCAGGCAGCGCCCCACACTGCGGGTCCCTATTCC
CAGGCGGCCCCTGCCCGCCAGCCACCGCCTGCTGAGGAAGAGGAGGAAGAAGCCAACAGCTATG
ACTCAGATCAAGCAACCACACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACCAAGACAACAG
CAACCTGCAGTGCACCATCATCAGGGCGAAGGGACTGAAGCCCATGGACTCCAACGGCTTAGCG
GATCCCTATGTGAAGCTGCATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGA
CCCTGCGCAACACCCGGAACCCTGTGTGGAACGAGACGCTGCAGTATCATGGCATTACTGAGGA
GGACATGCAGAGGAAGACACTCAGGATCTCTGTATGTGACGAGGACAAGTTTGGCCACAATGAG
TTCATTGGTGAGACCAGGTTCTCGCTCAAGAAACTGAAGGCGAACCAGAGGAAAAACTTCAACA
TCTGCCTGGAGCGGGTGATCCCGATGAAGCGCGCAGGAACCACTGGGTCAGCACGTGGCATGGC
TCTCTATGAGGAGGAGCAGGTGGAGCGGATCGGAGACATAGAGGAACGGGGCAAGATCCTGGTG
TCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATCGTGGGAATTATCCGCTGTGTGCACCTGG
CTGCCATGGACGCCAACGGCTACTCAGACCCCTTCGTCAAGCTCTGGCTGAAACCGGACATGGG
GAAGAAAGCCAAGCACAAGACTCAGATTAAAAAGAAGACCCTGAATCCCGAGTTTAATGAGGAG
TTCTTTTATGATATCAAACACAGCGACCTGGCCAAAAAGTCCCTGGATATCTCAGTGTGGGACT
ACGACATTGGCAAATCGAATGATTACATCGGAGGCTGCCAGCTGGGGATCTCGGCCAAGGGCGA
GCGCTTGAAACATTGGTATGAGTGTCTGAAGAACAAAGACAAGAAGATTGAACGTTGGCACCAA
CTGCAGAACGAGAACCACGTGTCGAGCGACTAGGACCTGGCGCCCTGCTGTCATCGTCTCTGCC
CCAGCTGCTCTCCCCTCTAAAGTCTCCCTTGCCAACCACGAACCTTCGATGTCCCCCCCACTTC
AGGTTCTGCAACAAACGAACTCTATGAGCTTCAGGGTCCAGATGAGAGCCCTTTCTGGTCCTCA
GAGATTGGGTGGTGGGTGTTGGGAGACATTTACGAAGATTTACTCTGACCTTAAACATATTTGT
GTCTCCTTGGGCATTGGTGGACCCTCAGGCTGTGAGGACCAGCAGGGGGCAGAAGTTATATATT
GAGGCTGCCTCTGTCCCTCCAAATCACTCGAGAAA

hide sequence

RefSeq Acc Id:

XM_006249379 ⟹ XP_006249441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,203,004 - 41,279,536 (+)	NCBI
mRatBN7.2	12	35,542,389 - 35,618,901 (+)	NCBI
Rnor_6.0	12	41,073,296 - 41,149,799 (+)	NCBI
Rnor_5.0	12	42,938,832 - 43,014,142 (+)	NCBI

Sequence:

show sequence

GTTTTCTCCTGCTACCTTCTGAGCCCGAGTTGCAGACTTCAGCAGCAATGTGGATGATCCTGAA
AACCACAGAGAGACGCACAGGCATATCTGCTGGTCTTTCAAGCCAAGTCGCTGGCACTTAACAT
CTCCCCCCGGCAGGGAGTTGGCAAGAATTTGGCTCACGCCTTCTGCTGCAATCCTCCGTTGTCT
TGGTGTGCCAGCCTTCCACCATGACTGACACTGTGGTGAACCGTTGGATGTACCCTGGTGATGG
CCCACTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCATCCTGGAGCACAG
ACGGACAGGCAGAGGAAGCAGGAAGAACTGACAGACGAGGAGAAGGAGATAATCAACCGGGTGA
TAGCTCGGGCAGAGAAGATGGAAGCCATGGAGCAGGAGCGCATCGGGCGCCTGGTGGACCGTCT
GGAGACCATGAGGAAGAATGTAGCTGGAGATGGTGTGAACCGTTGCATCCTGTGCGGGGAACAG
CTGGGCATGCTGGGCTCTGCGTGTGTCGTGTGTGAAGACTGTAAGAAGAATGTCTGCACCAAGT
GTGGGGTGGAGACCTCCAACAACCGTCCGCATCCAGTATGGCTCTGTAAGATCTGCCTTGAGCA
GAGAGAGGTCTGGAAGCGCTCGGGAGCATGGTTCTTCAAGGGTTTCCCAAAACAGGTCCTTCCA
CAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAGCCGGCCACCCAGGAGC
AGCCTACACCCGAGTCCAGGCATCCAGCCAGAGCTCCAGCTCGAGGTGACATGGAGGACAGGAG
GGCCCCAGGACAGAAGCCAGGCCCTGACCTCACCTCTGCTCCTGGACGAGGAAGCCATGGGCCT
CCCACACGCAGGGCCTCTGAGGCCCGGATGAGTACAACCACCCGTGATTCTGAGGGCTGGGACC
ATGGTCATGGTGGGGGTGCTGGAGACACCAGCCGGAGCCCAGGAGGTGAGCAAGGTTTGAGGCG
AGCTAACTCAGTCCAGGCCTCCCGCCCAGCTCCAGCCTCCATGCCAAGCCCGGCACCTCCTCAG
CCCGTGCAGCCAGGGCCCCCTGGGGGCAGCAGGGCCGCTCCTGGGCCGGGACGCTTTCCAGAGC
AGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATCCAGGGGCTGTTGCCCCAGCCCGGGAGGA
GAGGACAGGACCCACAGGGGGCTTCCAGGCAGCGCCCCACACTGCGGGTCCCTATTCCCAGGCG
GCCCCTGCCCGCCAGCCACCGCCTGCTGAGGAAGAGGAGGAAGAAGCCAACAGCTATGACTCAG
ATGAAGCAACCACACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACCAAGACAACAGCAACCT
GCAGTGCACCATCATCAGGGCGAAGGGACTGAAGCCCATGGACTCCAACGGCTTAGCGGATCCC
TATGTGAAGCTGCATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGACCCTGC
GCAACACCCGGAACCCTGTGTGGAACGAGACGCTGCAGTATCATGGCATTACTGAGGAGGACAT
GCAGAGGAAGACACTCAGGATCTCCGTATGTGACGAGGACAAGTTTGGCCACAATGAGTTCATT
GGTGAGACCAGGTTCTCGCTCAAGAAACTGAAGGCGAACCAGAGGAAAAACTTCAACATCTGCC
TGGAGCGGGTGATCCCGATGAAGCGCGCAGGAACCACTGGGTCAGCACGTGGCATGGCTCTCTA
TGAGGAGGAGCAGGTGGAGCGGATCGGAGACATAGAGGAACGGGGCAAGATCCTGGTGTCCCTC
ATGTACAGCACGCAGCAGGGCGGCCTCATCGTGGGAATTATCCGCTGTGTGCACCTGGCTGCCA
TGGACGCCAACGGCTACTCAGACCCCTTCGTCAAGCTCTGGCTGAAACCGGACATGGGGAAGAA
AGCCAAGCACAAGACTCAGATTAAAAAGAAGACCCTGAATCCCGAGTTTAATGAGGAGTTCTTT
TATGATATCAAACACAGCGACCTGGCCAAAAAGTCCCTGGATATCTCAGTGTGGGACTACGACA
TTGGCAAATCGAATGATTACATCGGAGGCTGCCAGCTGGGGATCTCGGCCAAGGGCGAGCGCTT
GAAACATTGGTATGAGTGTCTGAAGAACAAAGACAAGAAGATTGAACGTTGGCACCAACTGCAG
AACGAGAACCACGTGTCGAGCGACTAGGACCTGGCGCCCTGCTGTCATCGTCTCTGCCCCAGCT
GCTCTCCCCTCTAAAGTCTCCCTTGCCAACCACGAACCTTCGATGTCCCCCCCACTTCAGGTTC
TGCAACAAACGAACTCTATGAGCTTCAGGGTCCAGATGAGAGCCCTTTCTGGTCCTCAGAGATT
GGGTGGTGGGTGTGGGGAGACATTTACGAAGATTTACTCTGACCTTAAACATATTTGTGTCTCC
TTGGGCATTGGTGGACCCTCAGGCTGTGAGGACCAGCAGGGGGCAGAAGTTATATATTGAGGCT
GCCTCTGTCCCTCCAAATCACTCGAGAAAAAGCAAATCAAAGCAAACCAGACACACACTTTAGA
CACACCAGGAACTAGACACAGAATACACTAAGGGCCTGCACCTCCCTTTCCAGGAAGCTGCCCA
TCTGTTTCCTAGTAACCTCTCTCTCTCTGCACTTCCCTTCTCCTTGCTCACCTTCTGTCAATAC
CTCCTCAGCCACCCTCACACCCCACCCCTCCCCCACCACCTTTCCCCTCCCCTCTGGCCTCTCT
TCTACTCCCACCTCCACATTAGGAATGCAAGGCAGAGCCTCACCCCTGTGCCCCTTGCCAGCCT
GGACAGCAACCTCACAAGCTGGATGAAGCTGGGCCCCAAACTCTGACATCGCCACATCTCCCGT
TGGCATGGCTGGCTATCTCTGAGCCTGGGGCCCGCAGCCGGCACAGCCTGGGTGCATGGCAGCA
CTATAGACATCCTGCGGTCCAGGATCTCTCTTTCTCATCCATGGTCCCCACATGGGCACAGGTG
GCACAGGGCTAGCTCCCGGACCCCATCTTCTATCCTTCCTCTACTCTTTGCAAAGAACAAAGGA
CCTTCCCCCCTACCCCACACCCCTGCGAACTCTTACTCAGAGCCACCTCTGTTCTTTCTCTCTC
CCCACTCTCTTCCCTCTGGTTCCTGATGGTGATCAAATAACAATATTTAGAGCTTTAATCGGGT
CAGAACTCTCTTGATCCACCACAAATCAAGAGGACTGTACCGCTGAGCCTGGAGTCAGGCCATC
TTCCTCGCATGAGAGGCAAGTCTGGCTTTTCCCATCTTGATAGTCTTTCCCCATCAGCAACCCA
AGCCCCACCATTCCCTATAGAGTCAGAAAGACCCAGACTATATAACCTCCATTCCCAAGTCGCA
TAGTCTTGCTTGTTCCTTCCAATGTCAGTTGGGATTCCCCACCACACACTCGCAGTAACTCATG
CTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAGGTTCTGCCTGC
CCCAAGGTGGCTGGCCTTCCCACTTCCGTCTTCCCCCTTGCCCATGGCTCCCTGTTTAGTCCCC
ATAGATCCAATGCTCTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAAGCATGCTGACTGA
GTCACCCAAGCCTGATGCTGGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCGCAGTGCCCGG
ATGCCCTCCCTCACACACGCACCCACCCTTCTACATAGAACACAAGTCCCGGGTGCATGCACGA
TGCCCACTGCCTTTCTTTGCACTGATGTAGCCAGAAATAAAGTAGGAATATCCAAGAA

hide sequence

RefSeq Acc Id:

XM_006249380 ⟹ XP_006249442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,203,358 - 41,279,536 (+)	NCBI
mRatBN7.2	12	35,542,716 - 35,618,901 (+)	NCBI
Rnor_6.0	12	41,073,551 - 41,149,799 (+)	NCBI
Rnor_5.0	12	42,938,832 - 43,014,142 (+)	NCBI

Sequence:

show sequence

GGCTGCCCTTCCCCTCCGCTTGCGTCCTGGTGCTGTCCGTGGTACTGACTGCCAATCCGGATCG
TTCCCAGGCGCCCAGCCTCCCCTCCTGGCCTCCCACCTCTCCTCCCGCAGGCAACGCGGCACAA
TGCATCGCGGTGGGAGGCAAGCTGGGCTCCCCTGCGCCGGGAAGCGGCTGCCCCTCCCTCTGGA
TCACACAGGGTTTTTGCAGTAGGTGACAGCAGGATCGGGCACCAGGGAAGCAATTGATTCGTCT
ACTGCCCGCATCCCAGAGTTGCCTACGCTGCCCAGAGAGGGAGAGAGGAAAGAGAAGAGGGGAG
AGAAAGAGAGACTTACAAAACCTTCCTTCCATGTGGAGTAGTCTGAGTGAATCACTGCCCACCG
TTGTAGACTCCAACTGTACTTAGTTTTCTCCTTTGACGGGGGCATATCTGCTGGTCTTTCAAGC
CAAGTCGCTGGCACTTAACATCTCCCCCCGGCAGGGAGTTGGCAAGAATTTGGCTCACGCCTTC
TGCTGCAATCCTCCGTTGTCTTGGTGTGCCAGCCTTCCACCATGACTGACACTGTGGTGAACCG
TTGGATGTACCCTGGTGATGGCCCACTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGG
TCCGTCCATCCTGGAGCACAGACGGACAGGCAGAGGAAGCAGGAAGAACTGACAGACGAGGAGA
AGGAGATAATCAACCGGGTGATAGCTCGGGCAGAGAAGATGGAAGCCATGGAGCAGGAGCGCAT
CGGGCGCCTGGTGGACCGTCTGGAGACCATGAGGAAGAATGTAGCTGGAGATGGTGTGAACCGT
TGCATCCTGTGCGGGGAACAGCTGGGCATGCTGGGCTCTGCGTGTGTCGTGTGTGAAGACTGTA
AGAAGAATGTCTGCACCAAGTGTGGGGTGGAGACCTCCAACAACCGTCCGCATCCAGTATGGCT
CTGTAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAAGCGCTCGGGAGCATGGTTCTTCAAGGGT
TTCCCAAAACAGGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTG
GTGAGCCGGCCACCCAGGAGCAGCCTACACCCGAGTCCAGGCATCCAGCCAGAGCTCCAGCTCG
AGGTGACATGGAGGACAGGAGGGCCCCAGGACAGAAGCCAGGCCCTGACCTCACCTCTGCTCCT
GGACGAGGAAGCCATGGGCCTCCCACACGCAGGGCCTCTGAGGCCCGGATGAGTACAACCACCC
GTGATTCTGAGGGCTGGGACCATGGTCATGGTGGGGGTGCTGGAGACACCAGCCGGAGCCCAGG
AGGTTTGAGGCGAGCTAACTCAGTCCAGGCCTCCCGCCCAGCTCCAGCCTCCATGCCAAGCCCG
GCACCTCCTCAGCCCGTGCAGCCAGGGCCCCCTGGGGGCAGCAGGGCCGCTCCTGGGCCGGGAC
GCTTTCCAGAGCAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATCCAGGGGCTGTTGCCCC
AGCCCGGGAGGAGAGGACAGGACCCACAGGGGGCTTCCAGGCAGCGCCCCACACTGCGGGTCCC
TATTCCCAGGCGGCCCCTGCCCGCCAGCCACCGCCTGCTGAGGAAGAGGAGGAAGAAGCCAACA
GCTATGACTCAGATGAAGCAACCACACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACCAAGA
CAACAGCAACCTGCAGTGCACCATCATCAGGGCGAAGGGACTGAAGCCCATGGACTCCAACGGC
TTAGCGGATCCCTATGTGAAGCTGCATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTA
CAAAGACCCTGCGCAACACCCGGAACCCTGTGTGGAACGAGACGCTGCAGTATCATGGCATTAC
TGAGGAGGACATGCAGAGGAAGACACTCAGGATCTCCGTATGTGACGAGGACAAGTTTGGCCAC
AATGAGTTCATTGGTGAGACCAGGTTCTCGCTCAAGAAACTGAAGGCGAACCAGAGGAAAAACT
TCAACATCTGCCTGGAGCGGGTGATCCCGATGAAGCGCGCAGGAACCACTGGGTCAGCACGTGG
CATGGCTCTCTATGAGGAGGAGCAGGTGGAGCGGATCGGAGACATAGAGGAACGGGGCAAGATC
CTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATCGTGGGAATTATCCGCTGTGTGC
ACCTGGCTGCCATGGACGCCAACGGCTACTCAGACCCCTTCGTCAAGCTCTGGCTGAAACCGGA
CATGGGGAAGAAAGCCAAGCACAAGACTCAGATTAAAAAGAAGACCCTGAATCCCGAGTTTAAT
GAGGAGTTCTTTTATGATATCAAACACAGCGACCTGGCCAAAAAGTCCCTGGATATCTCAGTGT
GGGACTACGACATTGGCAAATCGAATGATTACATCGGAGGCTGCCAGCTGGGGATCTCGGCCAA
GGGCGAGCGCTTGAAACATTGGTATGAGTGTCTGAAGAACAAAGACAAGAAGATTGAACGTTGG
CACCAACTGCAGAACGAGAACCACGTGTCGAGCGACTAGGACCTGGCGCCCTGCTGTCATCGTC
TCTGCCCCAGCTGCTCTCCCCTCTAAAGTCTCCCTTGCCAACCACGAACCTTCGATGTCCCCCC
CACTTCAGGTTCTGCAACAAACGAACTCTATGAGCTTCAGGGTCCAGATGAGAGCCCTTTCTGG
TCCTCAGAGATTGGGTGGTGGGTGTGGGGAGACATTTACGAAGATTTACTCTGACCTTAAACAT
ATTTGTGTCTCCTTGGGCATTGGTGGACCCTCAGGCTGTGAGGACCAGCAGGGGGCAGAAGTTA
TATATTGAGGCTGCCTCTGTCCCTCCAAATCACTCGAGAAAAAGCAAATCAAAGCAAACCAGAC
ACACACTTTAGACACACCAGGAACTAGACACAGAATACACTAAGGGCCTGCACCTCCCTTTCCA
GGAAGCTGCCCATCTGTTTCCTAGTAACCTCTCTCTCTCTGCACTTCCCTTCTCCTTGCTCACC
TTCTGTCAATACCTCCTCAGCCACCCTCACACCCCACCCCTCCCCCACCACCTTTCCCCTCCCC
TCTGGCCTCTCTTCTACTCCCACCTCCACATTAGGAATGCAAGGCAGAGCCTCACCCCTGTGCC
CCTTGCCAGCCTGGACAGCAACCTCACAAGCTGGATGAAGCTGGGCCCCAAACTCTGACATCGC
CACATCTCCCGTTGGCATGGCTGGCTATCTCTGAGCCTGGGGCCCGCAGCCGGCACAGCCTGGG
TGCATGGCAGCACTATAGACATCCTGCGGTCCAGGATCTCTCTTTCTCATCCATGGTCCCCACA
TGGGCACAGGTGGCACAGGGCTAGCTCCCGGACCCCATCTTCTATCCTTCCTCTACTCTTTGCA
AAGAACAAAGGACCTTCCCCCCTACCCCACACCCCTGCGAACTCTTACTCAGAGCCACCTCTGT
TCTTTCTCTCTCCCCACTCTCTTCCCTCTGGTTCCTGATGGTGATCAAATAACAATATTTAGAG
CTTTAATCGGGTCAGAACTCTCTTGATCCACCACAAATCAAGAGGACTGTACCGCTGAGCCTGG
AGTCAGGCCATCTTCCTCGCATGAGAGGCAAGTCTGGCTTTTCCCATCTTGATAGTCTTTCCCC
ATCAGCAACCCAAGCCCCACCATTCCCTATAGAGTCAGAAAGACCCAGACTATATAACCTCCAT
TCCCAAGTCGCATAGTCTTGCTTGTTCCTTCCAATGTCAGTTGGGATTCCCCACCACACACTCG
CAGTAACTCATGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCA
GGTTCTGCCTGCCCCAAGGTGGCTGGCCTTCCCACTTCCGTCTTCCCCCTTGCCCATGGCTCCC
TGTTTAGTCCCCATAGATCCAATGCTCTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAAG
CATGCTGACTGAGTCACCCAAGCCTGATGCTGGTTTTGGCTCTGGACTCGGAATGCAGCCTGCT
CGCAGTGCCCGGATGCCCTCCCTCACACACGCACCCACCCTTCTACATAGAACACAAGTCCCGG
GTGCATGCACGATGCCCACTGCCTTTCTTTGCACTGATGTAGCCAGAAATAAAGTAGGAATATC
CAAGAA

hide sequence

RefSeq Acc Id:

XM_006249381 ⟹ XP_006249443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,203,357 - 41,279,536 (+)	NCBI
mRatBN7.2	12	35,542,715 - 35,618,901 (+)	NCBI
Rnor_6.0	12	41,073,551 - 41,149,799 (+)	NCBI
Rnor_5.0	12	42,938,832 - 43,014,142 (+)	NCBI

Sequence:

show sequence

GGCTGCCCTTCCCCTCCGCTTGCGTCCTGGTGCTGTCCGTGGTACTGACTGCCAATCCGGATCG
TTCCCAGGCGCCCAGCCTCCCCTCCTGGCCTCCCACCTCTCCTCCCGCAGGCAACGCGGCACAA
TGCATCGCGGTGGGAGGCAAGCTGGGCTCCCCTGCGCCGGGAAGCGGCTGCCCCTCCCTCTGGA
TCACACAGGGTTTTTGCAGTAGGTGACAGCAGGATCGGGCACCAGGGAAGCAATTGATTCGTCT
ACTGCCCGCATCCCAGAGTTGCCTACGCTGCCCAGAGAGGGAGAGAGGAAAGAGAAGAGGGGAG
AGAAAGAGAGACTTACAAAACCTTCCTTCCATGTGGAGTAGTCTGAGTGAATCACTGCCCACCG
TTGTAGACTCCAACTGTACTTAGTTTTCTCCTTTGACGGGGGCATATCTGCTGGTCTTTCAAGC
CAAGTCGCTGGCACTTAACATCTCCCCCCGGCAGGGAGTTGGCAAGAATTTGGCTCACGCCTTC
TGCTGCAATCCTCCGTTGTCTTGGTGTGCCAGCCTTCCACCATGACTGACACTGTGGTGAACCG
TTGGATGTACCCTGGTGATGGCCCACTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGG
TCCGTCCATCCTGGAGCACAGACGGACAGGCAGAGGAAGCAGGAAGAACTGACAGACGAGGAGA
AGGAGATAATCAACCGGGTGATAGCTCGGGCAGAGAAGATGGAAGCCATGGAGCAGGAGCGCAT
CGGGCGCCTGGTGGACCGTCTGGAGACCATGAGGAAGAATGTAGCTGGAGATGGTGTGAACCGT
TGCATCCTGTGCGGGGAACAGCTGGGCATGCTGGGCTCTGCGTGTGTCGTGTGTGAAGACTGTA
AGAAGAATGTCTGCACCAAGTGTGGGGTGGAGACCTCCAACAACCGTCCGCATCCAGTATGGCT
CTGTAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAAGCGCTCGGGAGCATGGTTCTTCAAGGGT
TTCCCAAAACAGGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTG
GTGAGCCGGCCACCCAGGAGCAGCCTACACCCGAGTCCAGGCATCCAGCCAGAGCTCCAGCTCG
AGGTGACATGGAGGACAGGAGGGCCCCAGGACAGAAGCCAGGCCCTGACCTCACCTCTGCTCCT
GGACGAGGAAGCCATGGGCCTCCCACACGCAGGGCCTCTGAGGCCCGGATGAGTACAACCACCC
GTGATTCTGAGGGCTGGGACCATGGTCATGGTGGGGGTGCTGGAGACACCAGCCGGAGCCCAGG
AGGTGAGCAAGGTTTGAGGCGAGCTAACTCAGTCCAGGCCTCCCGCCCAGCTCCAGCCTCCATG
CCAAGCCCGGCACCTCCTCAGCCCGTGCAGCCAGAGGCTCCTCCAAGTGACCCTGGCTATCCAG
GGGCTGTTGCCCCAGCCCGGGAGGAGAGGACAGGACCCACAGGGGGCTTCCAGGCAGCGCCCCA
CACTGCGGGTCCCTATTCCCAGGCGGCCCCTGCCCGCCAGCCACCGCCTGCTGAGGAAGAGGAG
GAAGAAGCCAACAGCTATGACTCAGATGAAGCAACCACACTGGGTGCCCTGGAATTCAGCCTTC
TCTATGACCAAGACAACAGCAACCTGCAGTGCACCATCATCAGGGCGAAGGGACTGAAGCCCAT
GGACTCCAACGGCTTAGCGGATCCCTATGTGAAGCTGCATCTGCTGCCTGGAGCCAGCAAGTCC
AACAAGCTTCGTACAAAGACCCTGCGCAACACCCGGAACCCTGTGTGGAACGAGACGCTGCAGT
ATCATGGCATTACTGAGGAGGACATGCAGAGGAAGACACTCAGGATCTCCGTATGTGACGAGGA
CAAGTTTGGCCACAATGAGTTCATTGGTGAGACCAGGTTCTCGCTCAAGAAACTGAAGGCGAAC
CAGAGGAAAAACTTCAACATCTGCCTGGAGCGGGTGATCCCGATGAAGCGCGCAGGAACCACTG
GGTCAGCACGTGGCATGGCTCTCTATGAGGAGGAGCAGGTGGAGCGGATCGGAGACATAGAGGA
ACGGGGCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATCGTGGGAATT
ATCCGCTGTGTGCACCTGGCTGCCATGGACGCCAACGGCTACTCAGACCCCTTCGTCAAGCTCT
GGCTGAAACCGGACATGGGGAAGAAAGCCAAGCACAAGACTCAGATTAAAAAGAAGACCCTGAA
TCCCGAGTTTAATGAGGAGTTCTTTTATGATATCAAACACAGCGACCTGGCCAAAAAGTCCCTG
GATATCTCAGTGTGGGACTACGACATTGGCAAATCGAATGATTACATCGGAGGCTGCCAGCTGG
GGATCTCGGCCAAGGGCGAGCGCTTGAAACATTGGTATGAGTGTCTGAAGAACAAAGACAAGAA
GATTGAACGTTGGCACCAACTGCAGAACGAGAACCACGTGTCGAGCGACTAGGACCTGGCGCCC
TGCTGTCATCGTCTCTGCCCCAGCTGCTCTCCCCTCTAAAGTCTCCCTTGCCAACCACGAACCT
TCGATGTCCCCCCCACTTCAGGTTCTGCAACAAACGAACTCTATGAGCTTCAGGGTCCAGATGA
GAGCCCTTTCTGGTCCTCAGAGATTGGGTGGTGGGTGTGGGGAGACATTTACGAAGATTTACTC
TGACCTTAAACATATTTGTGTCTCCTTGGGCATTGGTGGACCCTCAGGCTGTGAGGACCAGCAG
GGGGCAGAAGTTATATATTGAGGCTGCCTCTGTCCCTCCAAATCACTCGAGAAAAAGCAAATCA
AAGCAAACCAGACACACACTTTAGACACACCAGGAACTAGACACAGAATACACTAAGGGCCTGC
ACCTCCCTTTCCAGGAAGCTGCCCATCTGTTTCCTAGTAACCTCTCTCTCTCTGCACTTCCCTT
CTCCTTGCTCACCTTCTGTCAATACCTCCTCAGCCACCCTCACACCCCACCCCTCCCCCACCAC
CTTTCCCCTCCCCTCTGGCCTCTCTTCTACTCCCACCTCCACATTAGGAATGCAAGGCAGAGCC
TCACCCCTGTGCCCCTTGCCAGCCTGGACAGCAACCTCACAAGCTGGATGAAGCTGGGCCCCAA
ACTCTGACATCGCCACATCTCCCGTTGGCATGGCTGGCTATCTCTGAGCCTGGGGCCCGCAGCC
GGCACAGCCTGGGTGCATGGCAGCACTATAGACATCCTGCGGTCCAGGATCTCTCTTTCTCATC
CATGGTCCCCACATGGGCACAGGTGGCACAGGGCTAGCTCCCGGACCCCATCTTCTATCCTTCC
TCTACTCTTTGCAAAGAACAAAGGACCTTCCCCCCTACCCCACACCCCTGCGAACTCTTACTCA
GAGCCACCTCTGTTCTTTCTCTCTCCCCACTCTCTTCCCTCTGGTTCCTGATGGTGATCAAATA
ACAATATTTAGAGCTTTAATCGGGTCAGAACTCTCTTGATCCACCACAAATCAAGAGGACTGTA
CCGCTGAGCCTGGAGTCAGGCCATCTTCCTCGCATGAGAGGCAAGTCTGGCTTTTCCCATCTTG
ATAGTCTTTCCCCATCAGCAACCCAAGCCCCACCATTCCCTATAGAGTCAGAAAGACCCAGACT
ATATAACCTCCATTCCCAAGTCGCATAGTCTTGCTTGTTCCTTCCAATGTCAGTTGGGATTCCC
CACCACACACTCGCAGTAACTCATGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTC
TCTTCTAGAATCAGGTTCTGCCTGCCCCAAGGTGGCTGGCCTTCCCACTTCCGTCTTCCCCCTT
GCCCATGGCTCCCTGTTTAGTCCCCATAGATCCAATGCTCTGCCCACTTCCCTGTCATGGTCAC
CTTTAGGAGAAAGCATGCTGACTGAGTCACCCAAGCCTGATGCTGGTTTTGGCTCTGGACTCGG
AATGCAGCCTGCTCGCAGTGCCCGGATGCCCTCCCTCACACACGCACCCACCCTTCTACATAGA
ACACAAGTCCCGGGTGCATGCACGATGCCCACTGCCTTTCTTTGCACTGATGTAGCCAGAAATA
AAGTAGGAATATCCAAGAA

hide sequence

RefSeq Acc Id:

XM_039089038 ⟹ XP_038944966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,203,358 - 41,279,536 (+)	NCBI
mRatBN7.2	12	35,542,711 - 35,618,901 (+)	NCBI

RefSeq Acc Id:

XM_039089039 ⟹ XP_038944967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,203,357 - 41,279,536 (+)	NCBI
mRatBN7.2	12	35,542,715 - 35,618,901 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001430785	(Get FASTA)	NCBI Sequence Viewer
	NP_598202	(Get FASTA)	NCBI Sequence Viewer
	XP_006249441	(Get FASTA)	NCBI Sequence Viewer
	XP_006249442	(Get FASTA)	NCBI Sequence Viewer
	XP_006249443	(Get FASTA)	NCBI Sequence Viewer
	XP_038944966	(Get FASTA)	NCBI Sequence Viewer
	XP_038944967	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA62662	(Get FASTA)	NCBI Sequence Viewer
	EDM13753	(Get FASTA)	NCBI Sequence Viewer
	EDM13754	(Get FASTA)	NCBI Sequence Viewer
	EDM13755	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001844
	ENSRNOP00000086545
	ENSRNOP00000103857
	ENSRNOP00000107113
GenBank Protein	P47709	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_598202 ⟸ NM_133518

- UniProtKB:

P47709 (UniProtKB/Swiss-Prot), F1LPB9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTDTVVNRWMYPGDGPLQSNDKEQLQAGWSVHPGAQTDRQRKQEELTDEEKEIINRVIARAEKM
ETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKKNVCTKCGVETSN
NRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQPAGEPATQEQPTPESR
HPARAPARGDMEDRRAPGQKPGPDLTSAPGRGSHGPPTRRASEARMSTTTRDSEGWDHGHGGGA
GDTSRSPGGEQGLRRANSVQASRPAPASMPSPAPPQPVQPGPPGGSRAAPGPGRFPEQSTEAPP
SDPGYPGAVAPAREERTGPTGGFQAAPHTAGPYSQAAPARQPPPAEEEEEEANSYDSDQATTLG
ALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV
WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPM
KRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYS
DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDY
IGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD

hide sequence

RefSeq Acc Id:	XP_006249441 ⟸ XM_006249379
- Peptide Label:	isoform X1
- UniProtKB:	P47709 (UniProtKB/Swiss-Prot), F1LPB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDTVVNRWMYPGDGPLQSNDKEQLQAGWSVHPGAQTDRQRKQEELTDEEKEIINRVIARAEKM EAMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKKNVCTKCGVETSN NRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQPAGEPATQEQPTPESR HPARAPARGDMEDRRAPGQKPGPDLTSAPGRGSHGPPTRRASEARMSTTTRDSEGWDHGHGGGA GDTSRSPGGEQGLRRANSVQASRPAPASMPSPAPPQPVQPGPPGGSRAAPGPGRFPEQSTEAPP SDPGYPGAVAPAREERTGPTGGFQAAPHTAGPYSQAAPARQPPPAEEEEEEANSYDSDEATTLG ALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPM KRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYS DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDY IGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD hide sequence

RefSeq Acc Id:	XP_006249443 ⟸ XM_006249381
- Peptide Label:	isoform X4
- UniProtKB:	P47709 (UniProtKB/Swiss-Prot), A0A8I6A3Z9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDTVVNRWMYPGDGPLQSNDKEQLQAGWSVHPGAQTDRQRKQEELTDEEKEIINRVIARAEKM EAMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKKNVCTKCGVETSN NRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQPAGEPATQEQPTPESR HPARAPARGDMEDRRAPGQKPGPDLTSAPGRGSHGPPTRRASEARMSTTTRDSEGWDHGHGGGA GDTSRSPGGEQGLRRANSVQASRPAPASMPSPAPPQPVQPEAPPSDPGYPGAVAPAREERTGPT GGFQAAPHTAGPYSQAAPARQPPPAEEEEEEANSYDSDEATTLGALEFSLLYDQDNSNLQCTII RAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTL RISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQV ERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKT QIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE CLKNKDKKIERWHQLQNENHVSSD hide sequence

RefSeq Acc Id:	XP_006249442 ⟸ XM_006249380
- Peptide Label:	isoform X2
- UniProtKB:	P47709 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTDTVVNRWMYPGDGPLQSNDKEQLQAGWSVHPGAQTDRQRKQEELTDEEKEIINRVIARAEKM EAMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKKNVCTKCGVETSN NRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQPAGEPATQEQPTPESR HPARAPARGDMEDRRAPGQKPGPDLTSAPGRGSHGPPTRRASEARMSTTTRDSEGWDHGHGGGA GDTSRSPGGLRRANSVQASRPAPASMPSPAPPQPVQPGPPGGSRAAPGPGRFPEQSTEAPPSDP GYPGAVAPAREERTGPTGGFQAAPHTAGPYSQAAPARQPPPAEEEEEEANSYDSDEATTLGALE FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE TLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPMKRA GTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPF VKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGG CQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD hide sequence

Ensembl Acc Id:

ENSRNOP00000001844 ⟸ ENSRNOT00000001844

RefSeq Acc Id:	XP_038944966 ⟸ XM_039089038
- Peptide Label:	isoform X3
- UniProtKB:	P47709 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944967 ⟸ XM_039089039
- Peptide Label:	isoform X5
- UniProtKB:	P47709 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000092026 ⟸ ENSRNOT00000119612

Ensembl Acc Id:

ENSRNOP00000086545 ⟸ ENSRNOT00000106706

Ensembl Acc Id:

ENSRNOP00000107113 ⟸ ENSRNOT00000143871

Ensembl Acc Id:

ENSRNOP00000103857 ⟸ ENSRNOT00000151514

Protein Domains

C2 FYVE-type RabBD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P47709-F1-model_v2	AlphaFold	P47709	1-684	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620073	AgrOrtholog
BioCyc Gene	G2FUF-19199	BioCyc
Ensembl Genes	ENSRNOG00000001368	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000001844	ENTREZGENE
	ENSRNOT00000106706	ENTREZGENE
	ENSRNOT00000143871	ENTREZGENE
	ENSRNOT00000151514	ENTREZGENE
Gene3D-CATH	2.60.40.150	UniProtKB/Swiss-Prot
	3.30.40.10	UniProtKB/Swiss-Prot
InterPro	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	FYVE_2	UniProtKB/Swiss-Prot
	Rab_BD	UniProtKB/Swiss-Prot
	Rabphilin/DOC2/Noc2	UniProtKB/Swiss-Prot
	Rabphilin_Doc2_C2A	UniProtKB/Swiss-Prot
	RPH3A	UniProtKB/Swiss-Prot
	Synaptotagmin	UniProtKB/Swiss-Prot
	Znf_FYVE-rel	UniProtKB/Swiss-Prot
	Znf_FYVE_PHD	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
KEGG Report	rno:171039	UniProtKB/Swiss-Prot
NCBI Gene	171039	ENTREZGENE
PANTHER	PTHR45729	UniProtKB/Swiss-Prot
	PTHR45729:SF3	UniProtKB/Swiss-Prot
Pfam	FYVE_2	UniProtKB/Swiss-Prot
	PF00168	UniProtKB/Swiss-Prot
PhenoGen	Rph3a	PhenoGen
PRINTS	C2DOMAIN	UniProtKB/Swiss-Prot
	SYNAPTOTAGMN	UniProtKB/Swiss-Prot
PROSITE	PS50004	UniProtKB/Swiss-Prot
	RABBD	UniProtKB/Swiss-Prot
	ZF_FYVE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001368	RatGTEx
SMART	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot
	SSF57903	UniProtKB/Swiss-Prot
UniProt	A0A8I6A3Z9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AER8_RAT	UniProtKB/TrEMBL
	A0ABK0L3H9_RAT	UniProtKB/TrEMBL
	A0ABK0LMS2_RAT	UniProtKB/TrEMBL
	A6J1G4_RAT	UniProtKB/TrEMBL
	A6J1G6_RAT	UniProtKB/TrEMBL
	F1LPB9	ENTREZGENE, UniProtKB/TrEMBL
	P47709	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-22	Rph3a	rabphilin 3A	Rph3a	rabphilin 3A homolog (mouse)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rph3a	rabphilin 3A homolog (mouse)		rabphilin 3A	Name updated	1299863	APPROVED
2002-08-07	Rph3a	rabphilin 3A			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the synaptic vesicle membrane	729719
gene_physical_interaction	displays GTP-dependent interaction with rab3A	729719

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar