Arid4b (AT-rich interaction domain 4B) - Rat Genome Database

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Gene: Arid4b (AT-rich interaction domain 4B) Rattus norvegicus
Analyze
Symbol: Arid4b
Name: AT-rich interaction domain 4B
RGD ID: 619919
Description: Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within establishment of Sertoli cell barrier; regulation of gene expression; and spermatogenesis. Predicted to be active in nucleus. Orthologous to human ARID4B (AT-rich interaction domain 4B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 180 kDa Sin3-associated polypeptide; ARID domain-containing protein 4B; AT rich interactive domain 4B (Rbp1 like); AT-rich interactive domain-containing protein 4B; AT-rich interactive domain-containing protein 4B-like; Bcaa; histone deacetylase complex subunit SAP180; LOC100912163; retinoblastoma-binding protein 1-like 1; retinoblastoma-binding protein 1-related protein; sin3-associated polypeptide p180
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,833,908 - 55,958,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1755,833,908 - 55,958,382 (-)EnsemblGRCr8
mRatBN7.21751,138,419 - 51,262,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,138,535 - 51,262,906 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1754,307,059 - 54,431,741 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,309,993 - 58,434,682 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,441,277 - 52,565,842 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,831,353 - 53,955,897 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,833,023 - 53,915,076 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1753,629,839 - 53,713,408 (-)Ensemblrn6Rnor6.0
Rnor_5.01751,524,959 - 51,649,229 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41759,334,046 - 59,457,079 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1747,146,821 - 47,269,499 (-)NCBICelera
RGSC_v3.11759,341,326 - 59,467,912 (-)NCBI
Cytogenetic Map17q12.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
isoprenaline  (ISO)
leflunomide  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
phenobarbital  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
triticonazole  (EXP)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Characterization of BRCAA1 and its novel antigen epitope identification. Cui D, etal., Cancer Epidemiol Biomarkers Prev 2004 Jul;13(7):1136-45.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17043311   PMID:23487765  


Genomics

Comparative Map Data
Arid4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,833,908 - 55,958,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1755,833,908 - 55,958,382 (-)EnsemblGRCr8
mRatBN7.21751,138,419 - 51,262,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,138,535 - 51,262,906 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1754,307,059 - 54,431,741 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,309,993 - 58,434,682 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,441,277 - 52,565,842 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,831,353 - 53,955,897 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,833,023 - 53,915,076 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1753,629,839 - 53,713,408 (-)Ensemblrn6Rnor6.0
Rnor_5.01751,524,959 - 51,649,229 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41759,334,046 - 59,457,079 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1747,146,821 - 47,269,499 (-)NCBICelera
RGSC_v3.11759,341,326 - 59,467,912 (-)NCBI
Cytogenetic Map17q12.1NCBI
ARID4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,166,902 - 235,328,179 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,131,634 - 235,328,219 (-)Ensemblhg38GRCh38
GRCh371235,330,217 - 235,491,494 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,396,833 - 233,558,155 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1208,572,869 - 208,734,285 (-)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1205,778,664 - 205,940,460 (-)NCBIHuRef
CHM1_11236,602,539 - 236,763,841 (-)NCBICHM1_1
T2T-CHM13v2.01234,558,607 - 234,719,910 (-)NCBIT2T-CHM13v2.0
Arid4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,238,334 - 14,374,188 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,237,817 - 14,374,188 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381314,063,609 - 14,199,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1314,063,232 - 14,199,603 (+)Ensemblmm10GRCm38
MGSCv371314,156,059 - 14,291,870 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361313,855,918 - 13,991,729 (+)NCBIMGSCv36mm8
Celera1314,371,872 - 14,506,963 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.29NCBI
Arid4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,593,335 - 4,730,073 (+)Ensembl
ChiLan1.0NW_0049554924,593,335 - 4,730,073 (+)NCBIChiLan1.0ChiLan1.0
ARID4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,863,788 - 14,026,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,076,541 - 14,238,451 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,711,946 - 210,874,034 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,729,783 - 215,888,412 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,729,783 - 215,888,412 (-)EnsemblpanPan2panpan1.1
ARID4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,602,470 - 4,752,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,602,667 - 4,750,469 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha44,584,673 - 4,734,619 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,624,253 - 4,774,262 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,635,246 - 4,785,116 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,974,636 - 5,124,427 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arid4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934440,951,316 - 41,092,409 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648417,116,229 - 17,258,277 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648417,116,304 - 17,257,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,924,367 - 56,082,198 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11455,924,333 - 56,082,209 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21460,080,670 - 60,187,624 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,338,190 - 72,501,999 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,337,590 - 72,501,988 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605574,371,351 - 74,532,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477515,152,950 - 15,301,078 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477515,152,840 - 15,300,160 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Arid4b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11432,801,682 - 32,927,352 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arid4b
747 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:305
Count of miRNA genes:179
Interacting mature miRNAs:202
Transcripts:ENSRNOT00000010836, ENSRNOT00000022445
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174949693265155015Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat

Markers in Region
D17Got62  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21751,253,921 - 51,254,135 (+)MAPPERmRatBN7.2
Rnor_6.01753,946,864 - 53,947,077NCBIRnor6.0
Rnor_5.01751,640,470 - 51,640,683UniSTSRnor5.0
RGSC_v3.41759,449,129 - 59,449,342RGDRGSC3.4
RGSC_v3.41759,449,130 - 59,449,343UniSTSRGSC3.4
Celera1747,261,551 - 47,261,764UniSTS
RGSC_v3.11759,459,959 - 59,460,172RGD
RH 3.4 Map17533.89UniSTS
RH 3.4 Map17533.89RGD
RH 2.0 Map17469.1RGD
Cytogenetic Map17q12.1UniSTS
BF386697  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21751,188,719 - 51,188,929 (+)MAPPERmRatBN7.2
Rnor_6.01753,679,997 - 53,680,206NCBIRnor6.0
Rnor_6.01753,881,665 - 53,881,874NCBIRnor6.0
Rnor_5.01751,575,271 - 51,575,480UniSTSRnor5.0
Rnor_5.01751,376,515 - 51,376,724UniSTSRnor5.0
RGSC_v3.41759,383,931 - 59,384,140UniSTSRGSC3.4
Celera1747,196,349 - 47,196,558UniSTS
RH 3.4 Map17528.7UniSTS
Cytogenetic Map17q12.1UniSTS
RH138259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21751,143,424 - 51,143,586 (+)MAPPERmRatBN7.2
Rnor_6.01753,836,359 - 53,836,520NCBIRnor6.0
Rnor_6.01753,634,449 - 53,634,610NCBIRnor6.0
Rnor_5.01751,529,965 - 51,530,126UniSTSRnor5.0
Rnor_5.01751,330,967 - 51,331,128UniSTSRnor5.0
RGSC_v3.41759,338,625 - 59,338,786UniSTSRGSC3.4
Celera1747,151,400 - 47,151,561UniSTS
RH 3.4 Map17531.9UniSTS
Cytogenetic Map17q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 134 57 60 41 86 41 298 168 11 125 71 74 19 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010836   ⟹   ENSRNOP00000010836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1755,833,908 - 55,958,382 (-)Ensembl
mRatBN7.2 Ensembl1751,138,535 - 51,262,906 (-)Ensembl
Rnor_6.0 Ensembl1753,833,023 - 53,915,076 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000022445   ⟹   ENSRNOP00000022445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1755,833,908 - 55,917,645 (-)Ensembl
mRatBN7.2 Ensembl1751,138,535 - 51,222,154 (-)Ensembl
Rnor_6.0 Ensembl1753,631,113 - 53,713,408 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078643   ⟹   ENSRNOP00000069593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1755,833,908 - 55,958,382 (-)Ensembl
mRatBN7.2 Ensembl1751,138,535 - 51,262,906 (-)Ensembl
Rnor_6.0 Ensembl1753,629,839 - 53,688,966 (-)Ensembl
RefSeq Acc Id: NM_001414215   ⟹   NP_001401144
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,908 - 55,958,382 (-)NCBI
mRatBN7.21751,138,419 - 51,262,894 (-)NCBI
RefSeq Acc Id: NM_053421   ⟹   NP_445873
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,908 - 55,958,382 (-)NCBI
mRatBN7.21751,138,419 - 51,262,894 (-)NCBI
Rnor_6.01753,831,780 - 53,954,813 (-)NCBI
Rnor_5.01751,524,959 - 51,649,229 (-)NCBI
RGSC_v3.41759,334,046 - 59,457,079 (-)RGD
Celera1747,146,821 - 47,269,499 (-)RGD
Sequence:
RefSeq Acc Id: XM_008771764   ⟹   XP_008769986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,915 - 55,958,292 (-)NCBI
mRatBN7.21751,138,426 - 51,262,803 (-)NCBI
Rnor_6.01753,831,353 - 53,955,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771765   ⟹   XP_008769987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,915 - 55,958,292 (-)NCBI
mRatBN7.21751,138,426 - 51,262,803 (-)NCBI
Rnor_6.01753,831,353 - 53,955,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771766   ⟹   XP_008769988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,915 - 55,958,292 (-)NCBI
mRatBN7.21751,138,426 - 51,262,803 (-)NCBI
Rnor_6.01753,831,353 - 53,955,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096118   ⟹   XP_038952046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,915 - 55,885,606 (-)NCBI
mRatBN7.21751,138,421 - 51,190,111 (-)NCBI
RefSeq Acc Id: XM_063276774   ⟹   XP_063132844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,833,915 - 55,958,292 (-)NCBI
RefSeq Acc Id: XR_361039
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,840,850 - 55,958,292 (-)NCBI
mRatBN7.21751,145,361 - 51,262,803 (-)NCBI
Rnor_6.01753,838,376 - 53,955,897 (-)NCBI
Rnor_5.01751,524,959 - 51,649,229 (-)NCBI
Sequence:
RefSeq Acc Id: NP_445873   ⟸   NM_053421
- Peptide Label: isoform 2
- UniProtKB: Q9JKB5 (UniProtKB/Swiss-Prot),   F1LMH4 (UniProtKB/TrEMBL),   A6K9C7 (UniProtKB/TrEMBL),   F1LYA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769988   ⟸   XM_008771766
- Peptide Label: isoform X4
- UniProtKB: Q9JKB5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008769987   ⟸   XM_008771765
- Peptide Label: isoform X2
- UniProtKB: Q9JKB5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008769986   ⟸   XM_008771764
- Peptide Label: isoform X1
- UniProtKB: Q9JKB5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010836   ⟸   ENSRNOT00000010836
RefSeq Acc Id: XP_038952046   ⟸   XM_039096118
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000022445   ⟸   ENSRNOT00000022445
Ensembl Acc Id: ENSRNOP00000069593   ⟸   ENSRNOT00000078643
RefSeq Acc Id: NP_001401144   ⟸   NM_001414215
- Peptide Label: isoform 1
- UniProtKB: Q9JKB5 (UniProtKB/Swiss-Prot),   A0A0G2JVS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132844   ⟸   XM_063276774
- Peptide Label: isoform X3
- UniProtKB: Q9JKB5 (UniProtKB/Swiss-Prot)
Protein Domains
ARID

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JKB5-F1-model_v2 AlphaFold Q9JKB5 1-1228 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619919 AgrOrtholog
BioCyc Gene G2FUF-9065 BioCyc
Ensembl Genes ENSRNOG00000016391 Ensembl, ENTREZGENE
  ENSRNOG00000049751 Ensembl
Ensembl Transcript ENSRNOT00000010836 ENTREZGENE
  ENSRNOT00000078643 ENTREZGENE
Gene3D-CATH 1.10.150.60 UniProtKB/Swiss-Prot
  2.30.30.140 UniProtKB/Swiss-Prot
InterPro ARID/SWI1_ChromRemod UniProtKB/Swiss-Prot
  ARID4B UniProtKB/Swiss-Prot
  ARID_dom UniProtKB/Swiss-Prot
  ARID_dom_sf UniProtKB/Swiss-Prot
  RBB1NT UniProtKB/Swiss-Prot
  Tudor UniProtKB/Swiss-Prot
  Tudor_ARID4B_rpt1 UniProtKB/Swiss-Prot
  Tudor_ARID4B_rpt2 UniProtKB/Swiss-Prot
KEGG Report rno:84481 UniProtKB/Swiss-Prot
NCBI Gene 84481 ENTREZGENE
PANTHER PTHR13964:SF24 UniProtKB/Swiss-Prot
  RBP-RELATED UniProtKB/Swiss-Prot
Pfam ARID UniProtKB/Swiss-Prot
  RBB1NT UniProtKB/Swiss-Prot
PhenoGen Arid4b PhenoGen
PROSITE ARID UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016391 RatGTEx
  ENSRNOG00000049751 RatGTEx
SMART ARID UniProtKB/Swiss-Prot
  BRIGHT UniProtKB/Swiss-Prot
  TUDOR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46774 UniProtKB/Swiss-Prot
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot
UniProt A0A0G2JVS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XIH3_RAT UniProtKB/TrEMBL
  A6K9C7 ENTREZGENE, UniProtKB/TrEMBL
  ARI4B_RAT UniProtKB/Swiss-Prot
  F1LMH4 ENTREZGENE
  F1LYA4 ENTREZGENE, UniProtKB/TrEMBL
  Q9JKB5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Arid4b  AT-rich interaction domain 4B  LOC100912163  AT-rich interactive domain-containing protein 4B-like  Data merged from RGD:6488837 737654 PROVISIONAL
2015-11-25 Arid4b  AT-rich interaction domain 4B  Arid4b  AT rich interactive domain 4B (Rbp1 like)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912163  AT-rich interactive domain-containing protein 4B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Arid4b  AT rich interactive domain 4B (Rbp1 like)  Bcaa  retinoblastoma-binding protein 1-related protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Bcaa  retinoblastoma-binding protein 1-related protein      Symbol and Name status set to provisional 70820 PROVISIONAL