ARID4B (AT-rich interaction domain 4B) - Rat Genome Database

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Gene: ARID4B (AT-rich interaction domain 4B) Canis lupus familiaris
Analyze
Symbol: ARID4B
Name: AT-rich interaction domain 4B
RGD ID: 12083343
Description: ENCODES a protein that exhibits DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN chromatin organization (ortholog); establishment of Sertoli cell barrier (ortholog); genomic imprinting (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); common variable immunodeficiency 14 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 4B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,602,470 - 4,752,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,602,667 - 4,750,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,584,673 - 4,734,619 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,624,253 - 4,774,262 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,635,246 - 4,785,116 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,974,636 - 5,124,427 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
mitochondrion  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ARID4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,602,470 - 4,752,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,602,667 - 4,750,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,584,673 - 4,734,619 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,624,253 - 4,774,262 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,635,246 - 4,785,116 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,974,636 - 5,124,427 (+)NCBIUU_Cfam_GSD_1.0
ARID4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,166,902 - 235,328,179 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,131,634 - 235,328,219 (-)EnsemblGRCh38hg38GRCh38
GRCh371235,330,217 - 235,491,494 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,396,833 - 233,558,155 (-)NCBINCBI36Build 36hg18NCBI36
Celera1208,572,869 - 208,734,285 (-)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1205,778,664 - 205,940,460 (-)NCBIHuRef
CHM1_11236,602,539 - 236,763,841 (-)NCBICHM1_1
T2T-CHM13v2.01234,558,607 - 234,719,910 (-)NCBIT2T-CHM13v2.0
Arid4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,238,334 - 14,374,188 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,237,817 - 14,374,188 (+)EnsemblGRCm39 Ensembl
GRCm381314,063,609 - 14,199,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1314,063,232 - 14,199,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,156,059 - 14,291,870 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361313,855,918 - 13,991,729 (+)NCBIMGSCv36mm8
Celera1314,371,872 - 14,506,963 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.29NCBI
Arid4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,833,908 - 55,958,382 (-)NCBIGRCr8
mRatBN7.21751,138,419 - 51,262,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,138,535 - 51,262,906 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1754,307,059 - 54,431,741 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,309,993 - 58,434,682 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,441,277 - 52,565,842 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,831,353 - 53,955,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,833,023 - 53,915,076 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,629,839 - 53,713,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01751,524,959 - 51,649,229 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,334,046 - 59,457,079 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11759,341,326 - 59,467,912 (-)NCBI
Celera1747,146,821 - 47,269,499 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
Arid4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,593,335 - 4,730,073 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,593,335 - 4,730,073 (+)NCBIChiLan1.0ChiLan1.0
ARID4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,863,788 - 14,026,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,076,541 - 14,238,451 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,711,946 - 210,874,034 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,729,783 - 215,888,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,729,783 - 215,888,412 (-)Ensemblpanpan1.1panPan2
Arid4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934440,951,316 - 41,092,409 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648417,116,229 - 17,258,277 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648417,116,304 - 17,257,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,924,367 - 56,082,198 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11455,924,333 - 56,082,209 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21460,080,670 - 60,187,624 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,338,190 - 72,501,999 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,337,590 - 72,501,988 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605574,371,351 - 74,532,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477515,152,950 - 15,301,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477515,152,840 - 15,300,160 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARID4B
1368 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 14 4 5 10 8 10
Low 4 5 8 6 2 6 1 6 2 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005618808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005618809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_851566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_851728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002625564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005323921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005323922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005331429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005357743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005357744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005392247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005392248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005425329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005425330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000018209   ⟹   ENSCAFP00000016861
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl44,602,667 - 4,750,469 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000043863   ⟹   ENSCAFP00000036018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl44,602,667 - 4,750,469 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006177   ⟹   ENSCAFP00845004915
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl44,624,253 - 4,774,262 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006195   ⟹   ENSCAFP00845004925
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl44,624,253 - 4,772,725 (+)Ensembl
RefSeq Acc Id: XM_005618808   ⟹   XP_005618865
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,602,470 - 4,752,060 (+)NCBI
Dog10K_Boxer_Tasha44,584,675 - 4,734,619 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417404   ⟹   XP_022273112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,602,760 - 4,752,060 (+)NCBI
Dog10K_Boxer_Tasha44,584,675 - 4,734,619 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038472835   ⟹   XP_038328763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,635,250 - 4,785,116 (+)NCBI
RefSeq Acc Id: XM_038472836   ⟹   XP_038328764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,635,249 - 4,785,116 (+)NCBI
RefSeq Acc Id: XM_038472837   ⟹   XP_038328765
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,635,249 - 4,785,116 (+)NCBI
RefSeq Acc Id: XM_038472838   ⟹   XP_038328766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,635,249 - 4,785,116 (+)NCBI
RefSeq Acc Id: XM_038533851   ⟹   XP_038389779
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,974,638 - 5,124,427 (+)NCBI
RefSeq Acc Id: XM_038533852   ⟹   XP_038389780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,974,638 - 5,124,427 (+)NCBI
RefSeq Acc Id: XM_038533853   ⟹   XP_038389781
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,974,638 - 5,124,427 (+)NCBI
RefSeq Acc Id: XM_038533854   ⟹   XP_038389782
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,974,638 - 5,124,427 (+)NCBI
RefSeq Acc Id: XM_038598172   ⟹   XP_038454100
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBI
RefSeq Acc Id: XM_038598173   ⟹   XP_038454101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBI
RefSeq Acc Id: XM_038598174   ⟹   XP_038454102
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBI
RefSeq Acc Id: XM_038598175   ⟹   XP_038454103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,752,801 - 4,902,689 (+)NCBI
RefSeq Acc Id: XM_038662473   ⟹   XP_038518401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBI
RefSeq Acc Id: XM_038662474   ⟹   XP_038518402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBI
RefSeq Acc Id: XM_038662475   ⟹   XP_038518403
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBI
RefSeq Acc Id: XM_038662476   ⟹   XP_038518404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,624,278 - 4,774,273 (+)NCBI
RefSeq Acc Id: XM_851566   ⟹   XP_856659
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,602,760 - 4,752,060 (+)NCBI
Dog10K_Boxer_Tasha44,584,675 - 4,734,619 (+)NCBI
Sequence:
RefSeq Acc Id: XM_851728   ⟹   XP_856821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,602,760 - 4,752,060 (+)NCBI
Dog10K_Boxer_Tasha44,584,675 - 4,734,619 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002625564
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,602,760 - 4,744,481 (+)NCBI
Dog10K_Boxer_Tasha44,584,673 - 4,727,045 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005323921
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,635,247 - 4,777,486 (+)NCBI
RefSeq Acc Id: XR_005323922
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,635,246 - 4,777,365 (+)NCBI
RefSeq Acc Id: XR_005331429
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha44,584,673 - 4,726,924 (+)NCBI
RefSeq Acc Id: XR_005357743
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,974,636 - 5,116,821 (+)NCBI
RefSeq Acc Id: XR_005357744
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,974,636 - 5,116,700 (+)NCBI
RefSeq Acc Id: XR_005392247
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,752,801 - 4,895,122 (+)NCBI
RefSeq Acc Id: XR_005392248
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,752,801 - 4,895,001 (+)NCBI
RefSeq Acc Id: XR_005425329
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,624,278 - 4,766,689 (+)NCBI
RefSeq Acc Id: XR_005425330
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,624,278 - 4,766,568 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_856659   ⟸   XM_851566
- Peptide Label: isoform X1
- UniProtKB: A0A8C0ME96 (UniProtKB/TrEMBL),   A0A8I3MI65 (UniProtKB/TrEMBL),   A0A8C0LNQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_856821   ⟸   XM_851728
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q4S5 (UniProtKB/TrEMBL),   A0A8I3MLY5 (UniProtKB/TrEMBL),   A0A8C0LXX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005618865   ⟸   XM_005618808
- Peptide Label: isoform X1
- UniProtKB: A0A8C0ME96 (UniProtKB/TrEMBL),   A0A8I3MI65 (UniProtKB/TrEMBL),   A0A8C0LNQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273112   ⟸   XM_022417404
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LNQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036018   ⟸   ENSCAFT00000043863
RefSeq Acc Id: ENSCAFP00000016861   ⟸   ENSCAFT00000018209
RefSeq Acc Id: XP_038328765   ⟸   XM_038472837
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038328766   ⟸   XM_038472838
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038328764   ⟸   XM_038472836
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328763   ⟸   XM_038472835
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454100   ⟸   XM_038598172
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454102   ⟸   XM_038598174
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038454103   ⟸   XM_038598175
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038454101   ⟸   XM_038598173
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518401   ⟸   XM_038662473
- Peptide Label: isoform X1
- UniProtKB: A0A8C0ME96 (UniProtKB/TrEMBL),   A0A8I3MI65 (UniProtKB/TrEMBL),   A0A8C0LNQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518403   ⟸   XM_038662475
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LNQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518404   ⟸   XM_038662476
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q4S5 (UniProtKB/TrEMBL),   A0A8I3MLY5 (UniProtKB/TrEMBL),   A0A8C0LXX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518402   ⟸   XM_038662474
- Peptide Label: isoform X1
- UniProtKB: A0A8C0ME96 (UniProtKB/TrEMBL),   A0A8I3MI65 (UniProtKB/TrEMBL),   A0A8C0LNQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389779   ⟸   XM_038533851
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LNQ3 (UniProtKB/TrEMBL),   A0A8C0ME96 (UniProtKB/TrEMBL),   A0A8I3MI65 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389781   ⟸   XM_038533853
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LNQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389782   ⟸   XM_038533854
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LXX4 (UniProtKB/TrEMBL),   A0A8C0Q4S5 (UniProtKB/TrEMBL),   A0A8I3MLY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389780   ⟸   XM_038533852
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LNQ3 (UniProtKB/TrEMBL),   A0A8C0ME96 (UniProtKB/TrEMBL),   A0A8I3MI65 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845004915   ⟸   ENSCAFT00845006177
RefSeq Acc Id: ENSCAFP00845004925   ⟸   ENSCAFT00845006195
Protein Domains
ARID

Promoters
RGD ID:13682863
Promoter ID:EPDNEW_C931
Type:multiple initiation site
Name:ARID4B_1
Description:AT-rich interaction domain 4B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,602,484 - 4,602,544EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011439 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006436 UniProtKB/TrEMBL
  ENSCAFG00040002039 UniProtKB/TrEMBL
  ENSCAFG00845003468 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018209.7 UniProtKB/TrEMBL
  ENSCAFT00000043863.3 UniProtKB/TrEMBL
  ENSCAFT00030011861.1 UniProtKB/TrEMBL
  ENSCAFT00030011935.1 UniProtKB/TrEMBL
  ENSCAFT00040003955.1 UniProtKB/TrEMBL
  ENSCAFT00040004009.1 UniProtKB/TrEMBL
  ENSCAFT00845006177 ENTREZGENE
  ENSCAFT00845006177.1 UniProtKB/TrEMBL
  ENSCAFT00845006195 ENTREZGENE
  ENSCAFT00845006195.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
InterPro ARID4B UniProtKB/TrEMBL
  ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
  Tudor_ARID4B_rpt1 UniProtKB/TrEMBL
  Tudor_ARID4B_rpt2 UniProtKB/TrEMBL
KEGG Report cfa:488959 UniProtKB/TrEMBL
NCBI Gene ARID4B ENTREZGENE
PANTHER PTHR13964:SF24 UniProtKB/TrEMBL
  RBP-RELATED UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
  SSF54160 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8C0LNQ3 ENTREZGENE
  A0A8C0LXX4 ENTREZGENE
  A0A8C0ME96 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q4S5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MI65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLY5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38099 ENTREZGENE