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Gene: Pou3f2 (POU class 3 homeobox 2) Rattus norvegicus

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Symbol:

Pou3f2

Name:

POU class 3 homeobox 2

RGD ID:

61946

Description:

Enables DNA-binding transcription activator activity, RNA polymerase II-specific; HMG box domain binding activity; and sequence-specific DNA binding activity. Involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Orthologous to human POU3F2 (POU class 3 homeobox 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

brain-2; brain-specific homeobox/POU domain protein 2; Brn-2; nervous system-specific octamer-binding transcription factor N-Oct-3; oct-7; octamer-binding protein 7; octamer-binding transcription factor 7; OTF-7; POU domain, class 3, transcription factor 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	POU3F2 (POU class 3 homeobox 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pou3f2 (POU domain, class 3, transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pou3f2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POU3F2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	POU3F2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pou3f2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	POU3F2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	POU3F2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pou3f2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pou3f2 (POU class 3 homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Pou3f2 (POU domain, class 3, transcription factor 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	POU3F2 (POU class 3 homeobox 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	POU3F2 (POU class 3 homeobox 2)	Alliance	DIOPT (HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pou3f2b (POU class 3 homeobox 2b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pou3f2a (POU class 3 homeobox 2a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	pou3f2a (POU class 3 homeobox 2a)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YOX1	Alliance	DIOPT (Hieranoid\|OrthoFinder)
Caenorhabditis elegans (roundworm):	ceh-6	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ceh-6	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	vvl	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	vvl	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pou3f3	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	40,874,631 - 40,880,539 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	40,874,601 - 40,881,010 (-)	Ensembl				GRCr8
mRatBN7.2	5	36,077,930 - 36,083,838 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	36,077,930 - 36,083,838 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	38,207,622 - 38,213,515 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	39,800,219 - 39,806,116 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	39,739,886 - 39,745,785 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	36,677,452 - 36,683,356 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	36,681,528 - 36,683,356 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	41,323,568 - 41,325,396 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	37,281,880 - 37,283,708 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	35,088,092 - 35,093,981 (-)	NCBI		Celera
RGSC_v3.1	5	37,282,058 - 37,283,887 (-)	NCBI
Cytogenetic Map	5	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bipolar disorder (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

Aroclor 1254 (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

chlorpyrifos (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dorsomorphin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

flavonoids (ISO)

folic acid (ISO)

FR900359 (ISO)

ketamine (EXP)

lead(0) (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

p-chloromercuribenzoic acid (ISO)

PCB138 (EXP)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

astrocyte development (ISO)

brain development (IEA)

cell differentiation (IEA)

cerebral cortex radially oriented cell migration (ISO)

DNA-templated transcription (IEA)

epidermis development (ISO)

forebrain ventricular zone progenitor cell division (ISO)

hypothalamus cell differentiation (ISO)

myelination in peripheral nervous system (ISO)

negative regulation of gene expression (IEA,ISO)

nervous system development (IEA,ISO,ISS)

neurohypophysis development (ISO)

neuron development (IEA,ISO,ISS)

neuron differentiation (ISO,ISS)

neuron fate commitment (IEA,ISO,ISS)

neuron fate specification (IEA,ISO,ISS)

positive regulation of cell population proliferation (ISO)

positive regulation of multicellular organism growth (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO,ISS)

regulation of axonogenesis (ISO)

regulation of cell differentiation (ISO)

regulation of DNA-templated transcription (IDA,IEA)

regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

Schwann cell development (ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

transcription regulator complex (IEA,ISO)

Molecular Function

DNA binding (IDA,IEA,ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IDA,IEA,ISO)

DNA-binding transcription factor activity (IDA,IEA,ISO,TAS)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

HMG box domain binding (IDA)

identical protein binding (IEA,ISO)

protein binding (IPI,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

sequence-specific DNA binding (IDA,IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Sp1- and octamer-consensus sequence binding proteins during lens fibre differentiation.	Brunekreef GA, etal., Exp Eye Res. 1997 Mar;64(3):295-9.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Tst-1, a member of the POU domain gene family, binds the promoter of the gene encoding the cell surface adhesion molecule P0.	He X, etal., Mol Cell Biol 1991 Mar;11(3):1739-44.
5.	RHS2, a POU domain-containing gene, and its expression in developing and adult rat.	Le Moine C and Young WS 3rd, Proc Natl Acad Sci U S A 1992 Apr 15;89(8):3285-9.
6.	Spacing and orientation of bipartite DNA-binding motifs as potential functional determinants for POU domain factors.	Li P, etal., Genes Dev 1993 Dec;7(12B):2483-96.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Expression and activity of the POU transcription factor SCIP.	Monuki ES, etal., Science 1990 Sep 14;249(4974):1300-3.
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	GOA pipeline	RGD automated data pipeline
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Redundancy of class III POU proteins in the oligodendrocyte lineage.	Schreiber J, etal., J Biol Chem 1997 Dec 19;272(51):32286-93.
13.	Identification of novel domains within Sox-2 and Sox-11 involved in autoinhibition of DNA binding and partnership specificity.	Wiebe MS, etal., J Biol Chem. 2003 May 16;278(20):17901-11. Epub 2003 Mar 10.

Additional References at PubMed

PMID:8543156	PMID:8593698	PMID:9105675	PMID:11029584	PMID:12130536	PMID:12782656	PMID:15024079	PMID:15465489	PMID:17141158	PMID:18403418	PMID:18505825	PMID:18794345
PMID:23069940	PMID:24243019

Genomics

Comparative Map Data

Pou3f2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	40,874,631 - 40,880,539 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	40,874,601 - 40,881,010 (-)	Ensembl				GRCr8
mRatBN7.2	5	36,077,930 - 36,083,838 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	36,077,930 - 36,083,838 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	38,207,622 - 38,213,515 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	39,800,219 - 39,806,116 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	39,739,886 - 39,745,785 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	36,677,452 - 36,683,356 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	36,681,528 - 36,683,356 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	41,323,568 - 41,325,396 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	37,281,880 - 37,283,708 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	35,088,092 - 35,093,981 (-)	NCBI		Celera
RGSC_v3.1	5	37,282,058 - 37,283,887 (-)	NCBI
Cytogenetic Map	5	q21	NCBI

POU3F2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	98,834,574 - 98,839,458 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	98,834,574 - 98,839,458 (+)	Ensembl			hg38	GRCh38
GRCh37	6	99,282,450 - 99,287,334 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	99,389,301 - 99,393,387 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	99,389,300 - 99,393,386	NCBI
Celera	6	99,926,767 - 99,930,852 (+)	NCBI		Celera
Cytogenetic Map	6	q16.1	NCBI
HuRef	6	96,721,681 - 96,725,451 (+)	NCBI		HuRef
CHM1_1	6	99,545,501 - 99,549,586 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	100,008,944 - 100,013,827 (+)	NCBI		T2T-CHM13v2.0

Pou3f2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	22,482,095 - 22,488,366 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	22,482,780 - 22,488,366 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	22,482,095 - 22,488,366 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	22,482,780 - 22,488,366 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	22,413,941 - 22,415,278 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	22,577,629 - 22,578,966 (-)	NCBI		MGSCv36	mm8
Celera	4	22,241,121 - 22,242,061 (-)	NCBI		Celera
Cytogenetic Map	4	A3	NCBI
cM Map	4	9.73	NCBI

Pou3f2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	24,715,088 - 24,716,695 (+)	Ensembl
ChiLan1.0	NW_004955411	24,714,899 - 24,722,048 (+)	NCBI	ChiLan1.0	ChiLan1.0

POU3F2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	118,883,277 - 118,887,764 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	116,764,439 - 116,768,944 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	96,677,651 - 96,682,145 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	100,558,883 - 100,564,670 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

POU3F2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	57,103,712 - 57,108,522 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	56,862,028 - 56,869,251 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	57,925,134 - 57,932,364 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	57,925,422 - 57,926,753 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	57,285,124 - 57,292,343 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	57,128,337 - 57,135,538 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	57,373,160 - 57,380,387 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pou3f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	92,038,759 - 92,044,841 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936651	493,467 - 494,832 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936651	494,182 - 497,109 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POU3F2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	65,835,995 - 65,837,323 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	65,835,375 - 65,842,872 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	74,386,105 - 74,390,348 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POU3F2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	75,027,360 - 75,032,222 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	75,030,677 - 75,032,008 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	47,357,232 - 47,362,553 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pou3f2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624810	6,286,066 - 6,287,397 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624810	6,283,443 - 6,287,594 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pou3f2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	120,849,091 - 120,850,789 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pou3f2
35 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	66
Count of miRNA genes:	59
Interacting mature miRNAs:	66
Transcripts:	ENSRNOT00000009043
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	13731153	43590997	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	31130421	48841739	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

PMC196070P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	36,083,588 - 36,083,812 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	36,683,107 - 36,683,330	NCBI	Rnor6.0
Rnor_5.0	5	41,325,147 - 41,325,370	UniSTS	Rnor5.0
RGSC_v3.4	5	37,283,459 - 37,283,682	UniSTS	RGSC3.4
Celera	5	35,093,732 - 35,093,955	UniSTS
Cytogenetic Map	5	q21	UniSTS

PMC317216P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	36,082,170 - 36,082,940 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	36,681,689 - 36,682,458	NCBI	Rnor6.0
Rnor_5.0	5	41,323,729 - 41,324,498	UniSTS	Rnor5.0
RGSC_v3.4	5	37,282,041 - 37,282,810	UniSTS	RGSC3.4
Celera	5	35,092,315 - 35,093,083	UniSTS
Cytogenetic Map	5	q21	UniSTS

Pou3f2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	36,083,276 - 36,083,464 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	36,682,795 - 36,682,982	NCBI	Rnor6.0
Rnor_5.0	5	41,324,835 - 41,325,022	UniSTS	Rnor5.0
RGSC_v3.4	5	37,283,147 - 37,283,334	UniSTS	RGSC3.4
Celera	5	35,093,420 - 35,093,607	UniSTS
Cytogenetic Map	5	q21	UniSTS

UniSTS:492577

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	36,082,376 - 36,083,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	36,681,895 - 36,683,342	NCBI	Rnor6.0
Rnor_5.0	5	41,323,935 - 41,325,382	UniSTS	Rnor5.0
RGSC_v3.4	5	37,282,247 - 37,283,694	UniSTS	RGSC3.4
Celera	5	35,092,520 - 35,093,967	UniSTS
Cytogenetic Map	5	q21	UniSTS

Pou3f2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	36,082,723 - 36,083,453 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	36,682,242 - 36,682,971	NCBI	Rnor6.0
Rnor_5.0	5	41,324,282 - 41,325,011	UniSTS	Rnor5.0
Celera	5	35,092,867 - 35,093,596	UniSTS
Cytogenetic Map	5	q21	UniSTS

Pou3f2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	36,083,198 - 36,083,729 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	36,682,717 - 36,683,247	NCBI	Rnor6.0
Rnor_5.0	5	41,324,757 - 41,325,287	UniSTS	Rnor5.0
Celera	5	35,093,342 - 35,093,872	UniSTS
Cytogenetic Map	5	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	10	22	143	63	62	31	30	31	6	152	76	2	129	27	66	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L27663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009043 ⟹ ENSRNOP00000009043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	36,681,528 - 36,683,356 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120257 ⟹ ENSRNOP00000078344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	40,874,601 - 40,881,010 (-)	Ensembl
mRatBN7.2 Ensembl	5	36,077,930 - 36,083,838 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000129093 ⟹ ENSRNOP00000111314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	40,878,131 - 40,880,668 (-)	Ensembl

RefSeq Acc Id:

NM_172085 ⟹ NP_742082

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	40,874,631 - 40,880,539 (-)	NCBI
mRatBN7.2	5	36,077,930 - 36,083,838 (-)	NCBI
Rnor_6.0	5	36,677,452 - 36,683,356 (-)	NCBI
Rnor_5.0	5	41,323,568 - 41,325,396 (-)	NCBI
RGSC_v3.4	5	37,281,880 - 37,283,708 (-)	RGD
Celera	5	35,088,092 - 35,093,981 (-)	NCBI

Sequence:

show sequence

CCAAGGCAGAAAAGTAACTGTCAAATGCGCGGCTCCTTTAACCAGAGCGCCCAGTCCGGCTCCG
AGAGTCATGGCGACCGCAGCGTCTAACCACTACAGCCTGCTCACCTCCAGCGCCTCCATCGTGC
ACGCCGAGCCGCCTGGCGGCATGCAGCAGGGCGCGGGGGGCTACCGCGAGGCACAGAGCCTGGT
GCAGGGCGACTACGGTGCGCTGCAGAGCAACGGGCACCCGCTCAGCCACGCTCACCAGTGGATC
ACCGCGCTGTCCCACGGCGGCAGCGGCGGGGGCGGCGGCGGTGGTGGAGGAGGCGGGGGAGGCG
GCGGGGGAGGCGGCGACGGCTCCCCGTGGTCCACCAGCCCCCTAGGCCAGCCGGACATCAAGCC
CTCGGTGGTGGTACAGCAGGGTGGCCGAGGCGACGAGCTGCACGGGCCAGGAGCGCTGCAGCAG
CAGCACCAACAGCAACAGCAGCAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAGCAGC
AGCAACAACAGCGACCGCCACATCTGGTGCACCACGCTGCCAACCACCATCCCGGGCCCGGGGC
ATGGCGGAGTGCGGCGGCTGCAGCTCACCTTCCTCCCTCCATGGGAGCTTCCAACGGTGGTTTG
CTCTATTCGCAGCCCAGCTTCACGGTGAACGGCATGCTGGGCGCAGGAGGGCAGCCGGCTGGGC
TGCACCACCACGGCCTGAGGGACGCCCACGATGAGCCCCATCATGCAGACCACCACCCGCATCC
GCACTCTCACCCGCACCAGCAACCGCCCCCGCCACCTCCCCCACAAGGCCCACCGGGCCACCCA
GGCGCGCACCACGACCCGCACTCGGACGAGGACACGCCGACCTCAGACGACCTGGAGCAGTTCG
CCAAGCAATTCAAGCAGAGGCGGATCAAACTAGGATTTACTCAAGCAGACGTGGGGCTGGCGCT
TGGCACCCTGTACGGCAACGTCTTCTCGCAGACCACCATCTGCAGGTTTGAGGCCCTGCAGCTG
AGCTTCAAGAACATGTGCAAGCTGAAGCCTTTGTTGAACAAGTGGTTGGAAGAGGCAGACTCAT
CCTCGGGCAGCCCCACCAGCATAGACAAGATCGCTGCGCAAGGGCGCAAACGGAAAAAGCGGAC
CTCCATCGAGGTGAGCGTCAAGGGGGCTCTGGAGAGCCATTTCCTCAAATGCCCTAAGCCCTCG
GCCCAGGAGATCACCTCCCTCGCGGACAGCTTACAGCTGGAGAAGGAGGTGGTGAGAGTTTGGT
TTTGTAACAGGAGACAGAAAGAGAAAAGGATGACCCCTCCCGGAGGGACTCTGCCGGGCGCCGA
GGATGTGTATGGGGGGAGTAGGGACACGCCACCACACCACGGGGTGCAGACGCCCGTCCAGTGA
ACTCAAGCAGGGGAGGGGCAGAGCTTGGGGCTCCCCTCCCCTTTGGTCCACAGTCTTAACTGGG
ACCTCTGTTCCCCCTGTAACTTCTGATTGTTTTTTTTTTTTTAATTATTATTTTCCCGGTCCCT
TAAAAAGAGAAAAAAATAGAGAAATTAAGGAGAAAGGAAAGTAAAAGTAAAACACTGGACTAAC
CTATAGCAGGTAGCAGGTGTATTCATGGGTTTTGACCTTTGCAAGCGAGTACCCAGGCAATGAA
GTAGAATGTCTCCTAGTAAGAGTGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTCTGTGTGTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GGGAGGGAGGAGTCCTGGTAAAACTAAATAAATTACCAAAAAGAAAAAAAATCCACCAAACCGT
ACACAACACAAAACTGCAGCTTCCCATGCTCAAAGTTGACACGTGCTGCTGTGTTTATTTAATA
TGGTCCCCATCAGGAAAGAGGGAAAAATACACTTTTTAAAACTATTGGCAAAATTTAAGCACAC
GAATTTGCACTGCAAGAAAATTGAAGTTTACATTGACAAGTTCAACCCTTTTTTTTTTTTTCTC
TTAATACCCACTGTTAAATTTGAAGCTGTCCTTTGGGTTCTGTTCTGTTCTGCCTTATCCAGTG
GAGAGGACAGAAGCCAGCTCCTGGCCACCCTCCATTCCAGCGTTCTGATGCCCCTTGTTCTTAT
TGCTTGTAAACTTTGTTTTCTTCAACGCCCCAGACCTGGTGTAACACTTATTGGCTCTTTTCAC
CAAAGCGAAATGATTGGCTTCACACAAAATAAATAAATGTTTGCATTCAGGAAATGTGTATGGT
TTGCCCGCTTTATGCAAGGCAGGAATATCGTTGGAAATACAAATATAAGTGTTGAGCACTGTTT
TTTGTTTGGTTGGTTTTTTTTGTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTAAACCAC
ACAGTAAACTTCATCTTCAGGCAGTATTTCTGGGTAGGAGAGAAAAAGGAAAATCAATAGTGAG
TGATCAGTCACTTCATTTTTTTCAGGCAGGGCTATTGTGAAAGAACTAAAAAAACAAACAGAAA
AAAACCTGTGAGGTTAAATATATTGTCCAACAGACAGAAATTAAGGACTCTGAGAACTTGGAAA
CACACTGGGTTCTCTGCCTTTGGGTTTAATAACTTAATTATAAGGGATTAGTTGTGATGACAGC
AGTGGTTAAACTTTGTTCCTCTACTAGGTTTTATTTTTTAACATAAAGAAAATAACCCAGGAAC
TCGATATATCATATGCACACTGTGTTTCTTAACACAGAAATGCATATACTATAATGCATATATA
TATATATATATATATATTGGATAGACAGGTTTTTGTACCCAACAGTTCAATTGTTTATGAAGTC
ATATTTTGGGCTTTACACCATCTTCCCCCATAAGTTATTGCAGAAAAACATCAGTTCAGATTGG
ACAAAATTCCCCCCACTTTCATTAAAACAGACAAATGAAGGGGAGGGGGCATTTTCAATGATTT
CTTTCTCCCCCTTTGTTAATAAATTTTCAGTGCATTTTTTTTTACCTTGTCTAAATGGGAAATG
GTTTACACCCAACACAATAGAATATTCTGGAAGGTGTAGGTAAGAAAACAAAAACAGAAAAGGC
TATGGCTAAACTGAAATTAACACCATTAAAACTGTGATCAGTTTAAAAAATTAAATAGTTATCA
GCACAAAAGGGCGCTAAAAGGGAAAAAAACCTTAAATAGTTGGGGTTTTATTTCTTTGTTAGGT
ATCAGATAAATGTTATGTTAAAAAAGTAAATTCTCACTACCATAAATTGATGGCTCAGCATCGG
ATTAGCATTGCACTCCGTAGTTAAGGTTTTAGGTAATATGCTTTATCAAGTATTGTCTTTAGAA
ACTCCTGTGATTGTTTCATTTTCGATGTTTTTACAAGATAAATGGTGACTTATAATGGGCATAT
TTATTTGCCTGTATTTCATTTCCCCCAATGAATGTCACAGGAGATGCCATAGAGCTATTTCAGG
TTATATCACACTGCTTCTTCCTGATGTGTGGGGACTGGCCTTCAGTAAAGCAACCCAGAGGAGG
GCAGATGGCCAATGGTAAAAGGAGGAAATGAATTTGCAGATACTTATTACCAAGTAGGTAAGGT
CAGGAAGCTGGGGTTCCGGGGATGTGCCTACATCTTCTCTTGCTCTCTTAGGCTTACAAATATG
AAAGTTACCACTGAACCTTACCATATGTATATATGTTTAATATCTGTCTTTTGAAATGCAGAAA
TAGTTTAAATGTTTCTTTGTCTATTTTTCCTTTTGTTTTTAATGCTACCCAGGGAAATATTTTC
ATATCGTTTTACGTGGCCTGCCTCAATGTATATTTATTTCTTTGGAGAAAAAAAAAGGTTCTGA
AAACTGGTTTTCTGTAGCTTTAAATGAGTAGGTAGCAAGATCTATATGGGATGTCATTTTTTTG
TTCAGTTTCTTTAAAAAAATGCTTTGTTTTGATACATTTGGTTGTGCTTGTGGGGAAAATAAAA
GCGCAGAGATCCTTATATATTTATGTTAAAGTAATATTTTATTATTACATAAAACAGAAATGCA
CAATACCTTCATAGTTTGTTCTAATTATTGAAATATCTTTATTTTATTTTTAAAGATAGTGCCA
AGTTCTAAGAGGTGAGGAAGCCCTACCTAGACCTTATACTGACTGAGCTGTGTATAAAATACTT
CCCTTCCTTTATACGTCATAAAGTTTTGGAATAAATTTTATGCATATATTGCCAGCTTTCATGT
TTATAACTTCCAGAGGCATTTTCTTAGTTTTTTTTTTTTAAAGAGGAGTGTTCAGACTTTTCTT
TGCAGAAACTACCATGGGGCCCAAATATTGTCTTCACTGCCTTGTAGAATTCAATCAAATCAGT
CATTGGGTTTCAGCTCCAATTTGTTGGCCATTTCCTGAACAAACGAAAAAAAAATACTTGCCTT
GTAAATACATGCCCAGGTCCCTACACCTTCCCTCCAGGTTAGCTGCTCTTTGCCAATGGATTGT
TAAGGATAGCATCAGTGGGACTAGATGGACCTTAACCTCTGCCACATGTCCTTAGGTAAACTGG
TACCTTCAGAAAAGTGAGGCTTAGACAGAAATTATTATTCATTATTAACAAATATCCCTCAACA
ACAAAAACTCTTAACGATATGCAATATATATGTTTACCAACTGATTAAAAGTAGATACCACACA
TTAGTCCTCTTAGGTTTACAGGGGAAAGATACTTTTTTTACAACAGTGTATCTCTCTCACCAGG
CAAACAAACAAACAAACCACATCAAGATCTACATTAAAAGAAGAGGGAAAGAATGTATTGGAGA
GATACAAGCCATGGTTTGTTTCAGAAGGTTTTAGATAAAGCACTGCACTTAAAACAACAGCAAA
CAAGCAAAAAGATAGTCTTTAATGTTGGTGAAGTGTTTATATATTTGTTGGTGTATTTAAAGTC
CTCCTTGGAACACTGACTTAAAATATAAATGTCCATTTAGGAAAGGAGTTTCTGGGCTTATTAC
TTCTGATCATCTTTTCTAATTCCTAGTCAATATTACATGGGTCCCAAACAGATTCTGCCAAATG
ATCTTATCAATAGTCTGAACAAGAAGTGACAGAAAGAAGAAGTGTTTTGTGACCACAGACATGC
TGATGGGTAAAATGTTTAAGCTAGGTATAGATTTGAGTTCTGGGTCAATATCCCTCCTCTGAAG
GAGGAAAGCGAGCCTCATCTGCCCTCTGCAGGGCGTTTCAGTGGACCCTGAGAAGGCATTTTTT
TTTCCTTTCCTCAGGCACTGTGAACAGACCTGGAAACATCATATATTAAACAGACACACTATGT
TCCTGACTTGTGTTGGTCACTGGGGTCCTCAAGCTGCTCTGGTAGCTTCCATGCCAGTCTTAGA
ATGTATTCCCACTTAAAAAAAAAAAAGACTGCAGAGTCATTAATACAAATCTGTGGGGACAATT
GTCAGATATCGACAAGCCATCTCTATCCTAAAGGCAAAAATGCAGTGTTTGTGTTTGCTCAAAA
CATGCCATATTTTAGATTTTTATATATACAGACATACTGGGGAAGAAAAGATTGTATATGAAAG
AGTATGTGAAGGTCATAAGGATGGAATGGCCACAACTAATATTATGCTTGGTGTGTGTGGTTTT
TTTTAAACATTCTTAGTTCCCCTGAAGAAATGTCCTTTATGTTTCAGATAGTACCAGTAAAACA
GCTGTCCTCGTTCCTCTCCCTCCTGCTCTTACAGAGAAGGCCACACGCTGTCAGAATTTTCTGG
TGAAATGTTTTTAATTAAGGCACTTGTCTCTCTATCTTATTCCTTCAAAAATAAAAACCAATAA
AACAACATAACAGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_742082	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98532	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000078344
GenBank Protein	P56222	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_742082 ⟸ NM_172085

- UniProtKB:

P56222 (UniProtKB/Swiss-Prot), G3V6U5 (UniProtKB/TrEMBL), A6IIG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA
LSHGGSGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQH
QQQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLY
SQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGA
HHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSF
KNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQ
EITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000009043 ⟸ ENSRNOT00000009043

Ensembl Acc Id:

ENSRNOP00000078344 ⟸ ENSRNOT00000120257

Ensembl Acc Id:

ENSRNOP00000111314 ⟸ ENSRNOT00000129093

Protein Domains

Homeobox POU-specific

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P56222-F1-model_v2	AlphaFold	P56222	1-445	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61946	AgrOrtholog
BioCyc Gene	G2FUF-41801	BioCyc
Ensembl Genes	ENSRNOG00000006908	Ensembl
	ENSRNOG00000063836	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000120257	ENTREZGENE
Gene3D-CATH	1.10.260.40	UniProtKB/Swiss-Prot
	Homeodomain-like	UniProtKB/Swiss-Prot
InterPro	Homeobox-like_sf	UniProtKB/Swiss-Prot
	Homeobox_CS	UniProtKB/Swiss-Prot
	Homeobox_dom	UniProtKB/Swiss-Prot
	Lambda_DNA-bd_dom_sf	UniProtKB/Swiss-Prot
	POU	UniProtKB/Swiss-Prot
	POU_dom	UniProtKB/Swiss-Prot
	POU_domain_TF	UniProtKB/Swiss-Prot
	TF_POU_3	UniProtKB/Swiss-Prot
NCBI Gene	29588	ENTREZGENE
PANTHER	POU DOMAIN	UniProtKB/Swiss-Prot
	POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 2	UniProtKB/Swiss-Prot
Pfam	Homeodomain	UniProtKB/Swiss-Prot
	Pou	UniProtKB/Swiss-Prot
PhenoGen	Pou3f2	PhenoGen
PIRSF	Transcription_factor_POU	UniProtKB/Swiss-Prot
PRINTS	POUDOMAIN	UniProtKB/Swiss-Prot
PROSITE	HOMEOBOX_1	UniProtKB/Swiss-Prot
	HOMEOBOX_2	UniProtKB/Swiss-Prot
	POU_1	UniProtKB/Swiss-Prot
	POU_2	UniProtKB/Swiss-Prot
	POU_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006908	RatGTEx
	ENSRNOG00000063836	RatGTEx
SMART	HOX	UniProtKB/Swiss-Prot
	POU	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46689	UniProtKB/Swiss-Prot
	SSF47413	UniProtKB/Swiss-Prot
UniProt	A0ABK0LY29_RAT	UniProtKB/TrEMBL
	A6IIG2	ENTREZGENE, UniProtKB/TrEMBL
	G3V6U5	ENTREZGENE, UniProtKB/TrEMBL
	P56222	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-24	Pou3f2	POU class 3 homeobox 2	Pou3f2	POU domain, class 3, transcription factor 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Pou3f2	POU domain, class 3, transcription factor 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD