| 1559904 | RGD1559904 | similar to mKIAA1429 protein | 5 | 25687467 | 25751655 | Rat |
| 1307386 | Gem | GTP binding protein overexpressed in skeletal muscle | 5 | 25809543 | 26008249 | Rat |
| 1306507 | Rad54b | RAD54 homolog B (S. cerevisiae) | 5 | 25830524 | 25899650 | Rat |
| 2320072 | LOC100361493 | hypothetical LOC100361493 | 5 | 25943973 | 25949823 | Rat |
| 619748 | Cdh17 | cadherin 17 | 5 | 26047222 | 26099173 | Rat |
| 620393 | Pdp1 | pyruvate dehyrogenase phosphatase catalytic subunit 1 | 5 | 26234414 | 26240301 | Rat |
| 1586167 | Tmem67 | transmembrane protein 67 | 5 | 26324625 | 26377531 | Rat |
| 1307658 | Rbm12b | RNA binding motif protein 12B | 5 | 26382356 | 26385470 | Rat |
| 1564940 | RGD1564940 | similar to RIKEN cDNA 3000004N20 | 5 | 26390438 | 26399113 | Rat |
| 1310681 | Fam92a1 | family with sequence similarity 92, member A1 | 5 | 26402199 | 26420568 | Rat |
| 1563653 | RGD1563653 | similar to TEX14 protein | 5 | 26480632 | 26482090 | Rat |
| 1561260 | Triqk | triple QxxK/R motif containing | 5 | 27218056 | 27291532 | Rat |
| 1586089 | LOC366318 | similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | 5 | 27991520 | 27992526 | Rat |
| 1563774 | RGD1563774 | similar to hypothetical protein 4930474N05 | 5 | 28067308 | 28068033 | Rat |
| 1597474 | LOC689012 | hypothetical protein LOC689012 | 5 | 28163367 | 28169075 | Rat |
| 1597705 | LOC685178 | hypothetical protein LOC685178 | 5 | 28189034 | 28191876 | Rat |
| 1305490 | Runx1t1 | runt-related transcription factor 1; translocated to, 1 (cyclin D-related) | 5 | 28230322 | 28338441 | Rat |
| 1597452 | LOC689034 | similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) | 5 | 28466051 | 28466604 | Rat |
| 2319512 | LOC100361762 | 60S ribosomal protein L29-like | 5 | 28549966 | 28550503 | Rat |
| 1597419 | LOC689067 | similar to DnaJ-like protein 2 | 5 | 28824730 | 28825898 | Rat |
| 1310846 | Slc26a7 | solute carrier family 26, member 7 | 5 | 28899539 | 29035178 | Rat |
| 1583733 | Lrrc69 | leucine rich repeat containing 69 | 5 | 29037113 | 29205722 | Rat |
| 1310024 | Otud6b | OTU domain containing 6B | 5 | 29268066 | 29283381 | Rat |
| 1306225 | Tmem55a | transmembrane protein 55A | 5 | 29329329 | 29376733 | Rat |
| 1596157 | LOC689147 | hypothetical protein LOC689147 | 5 | 29376159 | 29425936 | Rat |
| 708548 | Necab1 | N-terminal EF-hand calcium binding protein 1 | 5 | 29427273 | 29664037 | Rat |
| 1596398 | LOC685299 | similar to Ferritin light chain 1 (Ferritin L subunit 1) | 5 | 29515033 | 29515597 | Rat |
| 1596128 | LOC689176 | similar to transmembrane protein 64 | 5 | 29787203 | 29803906 | Rat |
| 69340 | Calb1 | calbindin 1 | 5 | 30455665 | 30480122 | Rat |
| 70999 | Decr1 | 2,4-dienoyl CoA reductase 1, mitochondrial | 5 | 30492196 | 30520172 | Rat |
| 2318778 | LOC100362104 | mitochondrial ribosomal protein L30 | 5 | 30529518 | 30529965 | Rat |
| 621420 | Nbn | nibrin | 5 | 30541610 | 30576168 | Rat |
| 1306323 | Osgin2 | oxidative stress induced growth inhibitor family member 2 | 5 | 30582447 | 30601332 | Rat |
| 1586088 | LOC366320 | similar to GA binding protein transcription factor, beta subunit 2 isoform beta 2 | 5 | 30680469 | 30681922 | Rat |
| 1309167 | Ripk2 | receptor-interacting serine-threonine kinase 2 | 5 | 30714817 | 30745941 | Rat |
| 1594758 | LOC689295 | hypothetical protein LOC689295 | 5 | 30767326 | 30773440 | Rat |
| 1593555 | LOC689308 | similar to cyclic nucleotide gated cation channel | 5 | 30789459 | 30800708 | Rat |
| 1565988 | RGD1565988 | similar to Chain A, Bhmt From Rat Liver | 5 | 31330809 | 31471861 | Rat |
| 1560431 | RGD1560431 | similar to Karyopherin (importin) alpha 2 | 5 | 31499359 | 31500934 | Rat |
| 2318973 | LOC100362007 | protein phosphatase 1, catalytic subunit, gamma-like | 5 | 31501825 | 31696093 | Rat |
| 1593494 | LOC689370 | similar to Eukaryotic translation initiation factor 5 (eIF-5) | 5 | 31724015 | 31725123 | Rat |
| 620199 | Mmp16 | matrix metallopeptidase 16 | 5 | 32352311 | 32586469 | Rat |
| 1592320 | LOC689442 | hypothetical protein LOC689442 | 5 | 32698577 | 32698852 | Rat |
| 1592300 | Cnbd1 | cyclic nucleotide binding domain containing 1 | 5 | 33405417 | 33734508 | Rat |
| 1565364 | Cngb3 | cyclic nucleotide gated channel beta 3 | 5 | 33867639 | 34136940 | Rat |
| 1592627 | LOC685520 | similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) | 5 | 34048913 | 34049560 | Rat |
| 1310178 | Cpne3 | copine III | 5 | 34154672 | 34203959 | Rat |
| 1563085 | Rmdn1 | regulator of microtubule dynamics 1 | 5 | 34210399 | 34233936 | Rat |
| 1311734 | Wwp1 | WW domain containing E3 ubiquitin protein ligase 1 | 5 | 34238505 | 34325951 | Rat |
| 1586087 | LOC366328 | similar to 60S ribosomal protein L13 | 5 | 34339537 | 34340162 | Rat |
| 1311633 | Slc7a13 | solute carrier family 7 (anionic amino acid transporter), member 13 | 5 | 34417523 | 34438081 | Rat |
| 1306900 | Atp6v0d2 | ATPase, H+ transporting, lysosomal V0 subunit D2 | 5 | 34476045 | 34524995 | Rat |
| 3915 | Ttpa | tocopherol (alpha) transfer protein | 5 | 34638551 | 34659077 | Rat |
| 2682 | Ggh | gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) | 5 | 34670883 | 34693791 | Rat |
| 1591051 | Nkain3 | Na+/K+ transporting ATPase interacting 3 | 5 | 34764661 | 35477296 | Rat |
| 2318358 | LOC100362327 | glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like | 5 | 35666438 | 35677702 | Rat |
| 1589970 | LOC689608 | hypothetical protein LOC689608 | 5 | 35734346 | 35802081 | Rat |
| 1589948 | LOC689630 | hypothetical protein LOC689630 | 5 | 36305207 | 36305841 | Rat |
| 1589932 | LOC689646 | similar to ribosomal protein S18 | 5 | 36342697 | 36343172 | Rat |
| 1586086 | LOC366329 | similar to Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific transplantation 84 kDa antigen) (TSTA) | 5 | 36371236 | 36373175 | Rat |
| 1586085 | LOC366330 | similar to 60S ribosomal protein L29 (P23) | 5 | 36381376 | 36381859 | Rat |
| 1589904 | LOC689674 | similar to 60S ribosomal protein L9 | 5 | 36392362 | 36392955 | Rat |
| 1589883 | Prdm13 | PR domain containing 13 | 5 | 36422405 | 36429851 | Rat |
| 70905 | Ccnc | cyclin C | 5 | 36465490 | 36483538 | Rat |
| 1563572 | Tstd3 | thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 | 5 | 36493245 | 36502679 | Rat |
| 1310976 | Usp45 | ubiquitin specific peptidase 45 | 5 | 36517213 | 36590986 | Rat |
| 1307395 | Pnisr | PNN-interacting serine/arginine-rich protein | 5 | 36598493 | 36625381 | Rat |
| 2324520 | LOC100362534 | K(lysine) acetyltransferase 2B-like | 5 | 36629428 | 36630713 | Rat |
| 2380 | Coq3 | coenzyme Q3 homolog, methyltransferase (S. cerevisiae) | 5 | 36640718 | 36656981 | Rat |
| 1562449 | Faxc | failed axon connections | 5 | 36677691 | 36737527 | Rat |
| 2324468 | LOC100362587 | WEE1 tyrosine kinase-like | 5 | 36749926 | 36769902 | Rat |
| 1586084 | LOC366334 | similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | 5 | 36971573 | 36972547 | Rat |
| 2324327 | LOC100362631 | PEST proteolytic signal containing nuclear protein-like | 5 | 37047556 | 37130833 | Rat |
| 1305724 | Fbxl4 | F-box and leucine-rich repeat protein 4 | 5 | 37156876 | 37230228 | Rat |
| 61946 | Pou3f2 | POU class 3 homeobox 2 | 5 | 37281880 | 37283708 | Rat |
| 1583732 | LOC500424 | similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | 5 | 37434124 | 37435124 | Rat |
| 2324143 | LOC100362715 | NAD-specific glutamate dehydrogenase-like | 5 | 38555476 | 38634101 | Rat |
| 1587505 | LOC689875 | similar to heat shock protein 8 | 5 | 38589183 | 38635570 | Rat |
| 1587486 | LOC689894 | hypothetical protein LOC689894 | 5 | 39213251 | 39220435 | Rat |
| 1586399 | LOC689901 | similar to TGF beta-inducible nuclear protein 1 | 5 | 39220477 | 39226542 | Rat |
| 1304693 | Mms22l | MMS22-like, DNA repair protein | 5 | 39528968 | 39645371 | Rat |
| 1587821 | LOC685954 | similar to 60S ribosomal protein L9 | 5 | 39607050 | 39607618 | Rat |
| 1310364 | Klhl32 | kelch-like family member 32 | 5 | 39657167 | 39903042 | Rat |
| 2323919 | LOC100362860 | hypothetical LOC100362860 | 5 | 39665563 | 39671981 | Rat |
| 2323783 | LOC100362910 | hypothetical LOC100362910 | 5 | 39721994 | 39723422 | Rat |
| 735162 | Ndufaf4 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 | 5 | 39939787 | 39944959 | Rat |
| 1306460 | Gpr63 | G protein-coupled receptor 63 | 5 | 40016167 | 40061157 | Rat |
| 1586330 | LOC689970 | similar to 40S ribosomal protein S20 | 5 | 40145332 | 40145694 | Rat |
| 1307056 | Fhl5 | four and a half LIM domains 5 | 5 | 40253199 | 40301542 | Rat |
| 1309308 | Ufl1 | Ufm1-specific ligase 1 | 5 | 40307712 | 40340062 | Rat |
| 1564843 | RGD1564843 | similar to hypothetical protein 4930474N05 | 5 | 40376210 | 40376935 | Rat |
| 619955 | Fut9 | fucosyltransferase 9 (alpha (1,3) fucosyltransferase) | 5 | 40716822 | 40934545 | Rat |
| 620327 | Manea | mannosidase, endo-alpha | 5 | 41577651 | 41590456 | Rat |
| 1585166 | LOC690046 | hypothetical protein LOC690046 | 5 | 41652215 | 41674081 | Rat |
| 1585161 | LOC690051 | similar to 40S ribosomal protein S6 | 5 | 41691539 | 41692261 | Rat |
| 1585135 | LOC690078 | similar to Dicer1, Dcr-1 homolog (Drosophila) | 5 | 43456245 | 43458318 | Rat |
| 2322518 | LOC100360232 | hypothetical LOC100360232 | 5 | 43960624 | 43960922 | Rat |
| 1584049 | LOC690119 | similar to ADP-ribosylation factor-like protein 6 | 5 | 44589338 | 44589897 | Rat |
| 70957 | Epha7 | Eph receptor A7 | 5 | 44728037 | 44878332 | Rat |
| 2323368 | LOC100363272 | riboflavin kinase-like | 5 | 45212935 | 45239030 | Rat |
| 1562265 | RGD1562265 | similar to ribosomal protein S12 | 5 | 45384176 | 45384574 | Rat |
| 631686 | Bp119 | Blood pressure QTL 119 | 3.8 | | Blood pressure | systolic | 5 | 1 | 40017184 | Rat |
| 2302053 | Pia33 | Pristane induced arthritis QTL 33 | 5 | .001 | Joint/bone inflammation | pristane induced | 5 | 1 | 40017184 | Rat |
| 1331756 | Rf34 | Renal function QTL 34 | 4.16275 | | Renal function | renal blood flow | 5 | 1 | 94516069 | Rat |
| 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | Glucose level | fasting | 5 | 1 | 138272129 | Rat |
| 1331771 | Rf35 | Renal function QTL 35 | 4.36965 | | Renal function | renal blood flow | 5 | 378448 | 90620456 | Rat |
| 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | Uterine inflammation | estrogen-induced | 5 | 1220773 | 79863911 | Rat |
| 2313085 | Bss59 | Bone structure and strength QTL 59 | 2.9 | .0001 | Bone structure | | 5 | 2965857 | 47965857 | Rat |
| 1300117 | Hrtrt8 | Heart rate QTL 8 | 3.49 | | Heart rate | salt-loaded | 5 | 2965857 | 49767421 | Rat |
| 2293666 | Bmd38 | Bone mineral density QTL 38 | 4.4 | | Bone mineral density | | 5 | 8464827 | 40137122 | Rat |
| 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | .0001 | Mammary tumor resistance | 7,12-dimethylbenzanthracene induced | 5 | 12880403 | 119333229 | Rat |
| 2303577 | Gluco47 | Glucose level QTL 47 | 3 | | Glucose level | post-restraint | 5 | 12890569 | 57890569 | Rat |
| 1641903 | Alcrsp3 | Alcohol response QTL 3 | | | Alcohol response | loss of righting reflex | 5 | 13886258 | 58886258 | Rat |
| 2316959 | Gluco59 | Glucose level QTL 59 | 4.7 | | Glucose level | postprandial | 5 | 17517235 | 119332868 | Rat |
| 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | Tongue tumor susceptibility | tongue tumor number | 5 | 17517235 | 168005953 | Rat |
| 1600358 | Mamtr5 | Mammary tumor resistance QTL 5 | | | Mammary tumor resistance | | 5 | 19206257 | 64206257 | Rat |
| 1358353 | Srcrtb2 | Stress Responsive Cort Basal QTL 2 | 3.48 | .003 | Hypothalamic-pituitary-adrenal axis | corticosterone | 5 | 19206257 | 77484299 | Rat |
| 1549901 | Neudeg2 | Neurodegradation QTL 2 | 4 | 0 | Neurodegradation | motoneuron cell number | 5 | 25602274 | 45822846 | Rat |
| 1578776 | Stresp18 | Stress response QTL 18 | 2.9 | | Stress response | thymus weight | 5 | 30030683 | 75030683 | Rat |
| 6903292 | Stl28 | Serum triglyceride level QTL 28 | 2.6 | .0073 | Lipid level | triglyceride level | 5 | 30606308 | 75606308 | Rat |
| 6903306 | Scl35 | Serum cholesterol QTL 35 | 2.6 | .0073 | Lipid level | cholesterol level | 5 | 30606308 | 75606308 | Rat |
| 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | Lipid level | cholesterol level | 5 | 32701659 | 138272129 | Rat |
| 1331782 | Rf36 | Renal function QTL 36 | 3.296 | | Renal function | renal blood flow | 5 | 35390492 | 101506667 | Rat |
| 1298067 | Scl15 | Serum cholesterol level QTL 15 | 4.8 | .001 | Lipid level | cholesterol | 5 | 35474610 | 80474610 | Rat |
| 1302786 | Kidm8 | Kidney mass QTL 8 | 28.15 | | Kidney mass | | 5 | 35474610 | 80474610 | Rat |
| 1598807 | Glom12 | Glomerulus QTL 12 | 2.7 | | Renal pathology | glomerular injury score | 5 | 35474610 | 80474610 | Rat |
| 1576317 | Eutr2 | Estrogen induced uterine response QTL 2 | | .01 | Uterine inflammation | estrogen-induced | 5 | 35911094 | 109163425 | Rat |
| 1641922 | Alcrsp8 | Alcohol response QTL 8 | | | Alcohol response | blood ethanol concentration | 5 | 36386126 | 71377566 | Rat |
| 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | Alcohol response | loss of righting reflex | 5 | 36386126 | 148460381 | Rat |
| 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | Lipid level | serum cholesterol, post dietary | 5 | 41498818 | 155121024 | Rat |
| 1331773 | Scl26 | Serum cholesterol QTL 26 | 3.065 | | Lipid level | cholesterol | 5 | 45499364 | 90620456 | Rat |
| 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | Renal function | renal vascular resistance | 5 | 45499364 | 135916908 | Rat |