Rn5-8s (5.8S ribosomal RNA) - Rat Genome Database

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Gene: Rn5-8s (5.8S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: Rn5-8s
Name: 5.8S ribosomal RNA
RGD ID: 5687331
Description: Orthologous to human RNA5-8SN3 (RNA, 5.8S ribosomal N3); INTERACTS WITH atrazine; fipronil; glyphosate.
Type: rrna
RefSeq Status: VALIDATED
RGD Orthologs
Human
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr811237,779 - 237,934 (-)NCBIGRCr8
UTH_Rnor_SHR_Utx31,649 - 1,804 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.031,090,120 - 1,090,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0311,454,835 - 11,454,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01446,646,165 - 46,646,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1446,646,166 - 46,646,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01446,823,932 - 46,824,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map14p11NCBI


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
atrazine  (EXP)
fipronil  (EXP)
glyphosate  (EXP)
vinclozolin  (EXP)

References
Additional References at PubMed
PMID:171258   PMID:1252408   PMID:6272219   PMID:6281138   PMID:6287418   PMID:6296773   PMID:6316273   PMID:6323401   PMID:6328433   PMID:6655692   PMID:7061495   PMID:16751776  


Genomics

Comparative Map Data
Rn5-8s
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr811237,779 - 237,934 (-)NCBIGRCr8
UTH_Rnor_SHR_Utx31,649 - 1,804 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.031,090,120 - 1,090,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0311,454,835 - 11,454,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01446,646,165 - 46,646,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1446,646,166 - 46,646,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01446,823,932 - 46,824,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map14p11NCBI
RNA5-8SP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38218,256,780 - 8,256,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl218,256,781 - 8,256,933 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map21p11.2NCBI
T2T-CHM13v2.0213,163,477 - 3,163,633 (+)NCBIT2T-CHM13v2.0
LOC119881652
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01127,660,685 - 27,660,835 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1127,660,685 - 27,660,835 (-)EnsemblROS_Cfam_1.0 Ensembl
RN5-8S
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.26872,543 - 872,698 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Markers in Region
G47279  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.232,233,533 - 2,233,671 (+)MAPPERmRatBN7.2
Rnor_6.01446,644,949 - 46,645,086NCBIRnor6.0
Rnor_5.01446,822,716 - 46,822,853UniSTSRnor5.0
Cytogenetic Map2q44UniSTS
ITS  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.232,233,636 - 2,234,798 (+)MAPPERmRatBN7.2
Rnor_6.01446,645,052 - 46,646,214NCBIRnor6.0
Rnor_6.04166,666,750 - 166,667,915NCBIRnor6.0
Rnor_5.01446,822,819 - 46,823,981UniSTSRnor5.0
Rnor_5.04229,193,924 - 229,195,089UniSTSRnor5.0
Celera1359,791 - 60,950UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000085643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1446,646,166 - 46,646,318 (+)Ensembl
RefSeq Acc Id: NR_046238
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr811237,779 - 237,934 (-)NCBI
Rnor_6.01446,646,165 - 46,646,320 (+)NCBI
Rnor_5.01446,823,932 - 46,824,087 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:5687331 AgrOrtholog
BioCyc Gene G2FUF-116 BioCyc
Ensembl Genes ENSRNOG00000059852 Ensembl
  ENSRNOG00000070263 ENTREZGENE
Ensembl Transcript ENSRNOT00000109600 ENTREZGENE
NCBI Gene Rn5-8s ENTREZGENE
PhenoGen Rn5-8s PhenoGen
RatGTEx ENSRNOG00000059852 RatGTEx
  ENSRNOG00000070263 RatGTEx
RNAcentral URS00004B2C76 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-02-07 Rn5-8s  5.8S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL