LOC119881652 (5.8S ribosomal RNA)

Gene: LOC119881652 (5.8S ribosomal RNA) Canis lupus familiaris

Analyze

Symbol:

LOC119881652 (Ensembl: 5_8S_rRNA)

Name:

5.8S ribosomal RNA

RGD ID:

40908255

Description:

ASSOCIATED WITH COVID-19 (ortholog)

Type:

pseudo (Ensembl: rRNA)

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ROS_Cfam_1.0	11	27,660,685 - 27,660,835 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	27,660,685 - 27,660,835 (-)	Ensembl		ROS_Cfam_1.0 Ensembl

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

References

Genomics

Comparative Map Data

LOC119881652
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ROS_Cfam_1.0	11	27,660,685 - 27,660,835 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	27,660,685 - 27,660,835 (-)	Ensembl		ROS_Cfam_1.0 Ensembl

RNA5-8SP10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	8,256,780 - 8,256,936 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	8,256,781 - 8,256,933 (+)	Ensembl	GRCh38		hg38	GRCh38
Cytogenetic Map	21	p11.2	NCBI
T2T-CHM13v2.0	21	3,163,477 - 3,163,633 (+)	NCBI		T2T-CHM13v2.0

Rn5-8s
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	237,779 - 237,934 (-)	NCBI		GRCr8
UTH_Rnor_SHR_Utx	3	1,649 - 1,804 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	1,090,120 - 1,090,275 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	11,454,835 - 11,454,990 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	46,646,165 - 46,646,320 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	46,646,166 - 46,646,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	46,823,932 - 46,824,087 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Cytogenetic Map	14	p11	NCBI

RN5-8S
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	6	872,543 - 872,698 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

Sequence

Nucleotide Sequences


GenBank Nucleotide	JAAUVH010000356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845041632

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	27,660,685 - 27,660,835 (-)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00845023584	Ensembl, ENTREZGENE
NCBI Gene	LOC119881652	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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