RNA5-8SP10 (RNA, 5.8S ribosomal pseudogene 10) - Rat Genome Database

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Gene: RNA5-8SP10 (RNA, 5.8S ribosomal pseudogene 10) Homo sapiens
Analyze
Symbol: RNA5-8SP10 (Ensembl: 5_8S_rRNA)
Name: RNA, 5.8S ribosomal pseudogene 10 (Ensembl:5.8S ribosomal RNA)
RGD ID: 12907523
HGNC Page HGNC:53559
Description: 45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This locus represents a likely pseudogene and copy of the 5.8S ribosomal RNA, part of an incomplete rDNA repeat unit on chromosome 21. [provided by RefSeq, May 2017]
Type: pseudo (Ensembl: rRNA)
RefSeq Status: INFERRED
Previously known as: FP671120.4; null
RGD Orthologs
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38218,256,780 - 8,256,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl218,256,781 - 8,256,933 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map21p11.2NCBI
T2T-CHM13v2.0213,163,477 - 3,163,633 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (HEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
atrazine  (ISO)
fipronil  (ISO)
glyphosate  (ISO)
vinclozolin  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:2319598   PMID:2422931   PMID:2559294   PMID:2606358   PMID:2606359   PMID:2726449   PMID:2737289   PMID:2987803   PMID:2989541   PMID:3649563   PMID:3670298   PMID:3689320  
PMID:3785147   PMID:3865188   PMID:4091818   PMID:4508329   PMID:6287426   PMID:6954460   PMID:7557999   PMID:8276415   PMID:8972871   PMID:16024823   PMID:17171232   PMID:18025267  
PMID:21822302   PMID:23412654   PMID:25209200   PMID:25346433   PMID:25436580   PMID:25583482   PMID:27250769   PMID:27474438   PMID:27797956  


Genomics

Comparative Map Data
RNA5-8SP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38218,256,780 - 8,256,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl218,256,781 - 8,256,933 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map21p11.2NCBI
T2T-CHM13v2.0213,163,477 - 3,163,633 (+)NCBIT2T-CHM13v2.0
Rn5-8s
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr811237,779 - 237,934 (-)NCBIGRCr8
UTH_Rnor_SHR_Utx31,649 - 1,804 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.031,090,120 - 1,090,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0311,454,835 - 11,454,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01446,646,165 - 46,646,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1446,646,166 - 46,646,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01446,823,932 - 46,824,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map14p11NCBI
LOC119881652
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01127,660,685 - 27,660,835 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1127,660,685 - 27,660,835 (-)EnsemblROS_Cfam_1.0 Ensembl
RN5-8S
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.26872,543 - 872,698 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENST00000610460
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl218,256,781 - 8,256,933 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5-8SP10 COSMIC
Ensembl Genes ENSG00000277739 Ensembl, ENTREZGENE
GTEx ENSG00000277739 GTEx
HGNC ID HGNC:53559 ENTREZGENE
Human Proteome Map RNA5-8SP10 Human Proteome Map
NCBI Gene RNA5-8SP10 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-31 RNA5-8SP10  RNA, 5.8S ribosomal pseudogene 10  FP671120.4    Data merged from RGD:16568324 737654 PROVISIONAL
2020-02-07 FP671120.4    5_8S_rRNA  5.8S ribosomal RNA  Symbol and/or name change 19259462 PROVISIONAL