Rasa1 (RAS p21 protein activator 1) - Rat Genome Database

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Gene: Rasa1 (RAS p21 protein activator 1) Rattus norvegicus
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Symbol: Rasa1
Name: RAS p21 protein activator 1
RGD ID: 3537
Description: Enables several functions, including GTPase activator activity; platelet-derived growth factor receptor binding activity; and protein kinase binding activity. Involved in several processes, including activation of GTPase activity; cellular response to epidermal growth factor stimulus; and cellular response to platelet-derived growth factor stimulus. Located in nuclear membrane. Human ortholog(s) of this gene implicated in arteriovenous malformation and basal cell carcinoma. Orthologous to human RASA1 (RAS p21 protein activator 1); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GAP; GAPX; GTPase-activating protein; p120GAP; ras GTPase-activating protein 1; RAS p21 protein activator; RAS p21 protein activator (GTPase activating protein) 1; Rasa; rasGAP
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8217,593,136 - 17,676,707 (-)NCBIGRCr8
mRatBN7.2215,857,704 - 15,940,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl215,857,980 - 15,940,854 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx222,959,727 - 23,040,229 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0221,059,980 - 21,140,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0215,733,780 - 15,814,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0213,617,021 - 13,696,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl213,616,822 - 13,696,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0213,470,580 - 13,551,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4214,203,815 - 14,287,824 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1214,124,183 - 14,208,193 (-)NCBI
Celera212,124,725 - 12,204,755 (-)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rasa1Ratarteriovenous malformation  ISORASA1 (Homo sapiens)1581296 RGD 
Rasa1Ratbasal cell carcinoma  ISORASA1 (Homo sapiens)737716DNA:missense mutations:cds: (human)RGD 
Rasa1RatCapillary Malformation-Arteriovenous Malformation susceptibilityISORASA1 (Homo sapiens)734495DNA:mutations:multiple (human)RGD 
Rasa1RatLeft Ventricular Hypertrophy  ISORasa1 (Mus musculus)9999450in males and protein:decreased expression:heart left ventricle (mouse)RGD 
Rasa1RatPort-Wine Stain  ISORASA1 (Homo sapiens)734495DNA:mutations:exons:multiple (human)RGD 
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Original Reference(s)
Rasa1Ratbasal cell carcinoma  ISORASA1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15574420 more ...
Rasa1RatCapillary Malformation-Arteriovenous Malformation  ISORASA1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:14639529 more ...
Rasa1RatCapillary Malformation-Arteriovenous Malformation 1  ISORASA1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:14639529 more ...
Rasa1RatCentral Nervous System Venous Angioma  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Cerebral venous angiomaClinVarPMID:23650393 more ...
Rasa1Ratfamilial adenomatous polyposis 1  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
Rasa1Ratgenetic disease  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
Rasa1Rathereditary hemorrhagic telangiectasia  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Osler hemorrhagic telangiectasia syndromeClinVarPMID:18446851 more ...
Rasa1RatHereditary Neoplastic Syndromes  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary neoplastic syndromeClinVarPMID:17963004 more ...
Rasa1RatInfantile Capillary Hemangioma  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Capillary infantile hemangiomaClinVarPMID:25741868
Rasa1RatKlippel-Trenaunay syndrome  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Angio-osteohypertrophy syndromeClinVar 
Rasa1RatMultiple Basal Cell Carcinoma  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Basal cell carcinoma and multipleClinVarPMID:22200646 more ...
Rasa1RatNeurodevelopmental Disorders  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Rasa1RatSturge-Weber syndrome  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Parkes Weber syndromeClinVarPMID:25741868 and PMID:28492532
Rasa1RatSturge-Weber syndrome  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Parkes Weber syndromeClinVarPMID:22200646 more ...
Rasa1RatVascular Malformations  ISORASA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Vascular malformationClinVarPMID:18363760 more ...
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Original Reference(s)
Rasa1RatAnimal Mammary Neoplasms  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12606953
Rasa1Ratarteriovenous malformation  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:14639529
Rasa1Ratbasal cell carcinoma  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Rasa1RatCapillary Malformation-Arteriovenous Malformation  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Rasa1Ratcarcinoma  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12606953
Rasa1RatChemical and Drug Induced Liver Injury  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25231249
Rasa1RatExperimental Mammary Neoplasms  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12606953
Rasa1Ratlung adenocarcinoma  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27158780
Rasa1RatPort-Wine Stain  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:14639529
Rasa1Ratsquamous cell carcinoma  ISORASA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27158780
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Original Reference(s)
Rasa1Ratbasal cell carcinoma  ISORASA1 (Homo sapiens)7240710 OMIM 
Rasa1RatCapillary Malformation-Arteriovenous Malformation 1  ISORASA1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Rasa1Rat(+)-taxifolin decreases expressionISORASA1 (Homo sapiens)6480464taxifolin results in decreased expression of RASA1 mRNACTDPMID:17541156
Rasa1Rat1,2-dimethylhydrazine decreases expressionISORasa1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of RASA1 mRNACTDPMID:22206623
Rasa1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISORasa1 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:15329391
Rasa1Rat17beta-estradiol increases expressionISORASA1 (Homo sapiens)6480464Estradiol results in increased expression of RASA1 mRNACTDPMID:19264808
Rasa1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:21394737
Rasa1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORasa1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RASA1 mRNACTDPMID:21570461
Rasa1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of RASA1 mRNACTDPMID:33387578
Rasa1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RASA1 mRNACTDPMID:34747641
Rasa1Rat2,6-dimethoxyphenol multiple interactionsISORASA1 (Homo sapiens)6480464[pyrogallol 1 more ...CTDPMID:38598786
Rasa1Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of RASA1 mRNACTDPMID:21346803
Rasa1Rat2-hydroxypropanoic acid decreases expressionISORASA1 (Homo sapiens)6480464Lactic Acid results in decreased expression of RASA1 mRNACTDPMID:30851411
Rasa1Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of RASA1 proteinCTDPMID:34915118
Rasa1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORASA1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of RASA1 mRNACTDPMID:28628672
Rasa1Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of RASA1 mRNACTDPMID:28959563
Rasa1Rataflatoxin B1 increases expressionISORasa1 (Mus musculus)6480464Aflatoxin B1 results in increased expression of RASA1 mRNACTDPMID:19770486
Rasa1Rataflatoxin B1 decreases methylationISORASA1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of RASA1 geneCTDPMID:27153756
Rasa1Ratall-trans-retinoic acid increases expressionISORASA1 (Homo sapiens)6480464Tretinoin results in increased expression of RASA1 mRNACTDPMID:33167477
Rasa1Rataristolochic acid A decreases expressionISORASA1 (Homo sapiens)6480464aristolochic acid I results in decreased expression of RASA1 mRNACTDPMID:33212167
Rasa1Ratarsane increases methylationISORASA1 (Homo sapiens)6480464Arsenic results in increased methylation of RASA1 promoterCTDPMID:21291286
Rasa1Ratarsenic atom increases methylationISORASA1 (Homo sapiens)6480464Arsenic results in increased methylation of RASA1 promoterCTDPMID:21291286

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Biological Process
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Original Reference(s)
Rasa1Ratactin cytoskeleton organization involved_inNAS 8554802PMID:8344248UniProt 
Rasa1Ratactivation of GTPase activity  IDA 9999452 RGD 
Rasa1Ratblood vessel morphogenesis involved_inISORASA1 (Homo sapiens)1624291 PMID:23687085RGDPMID:23687085
Rasa1Ratblood vessel morphogenesis involved_inIEAUniProtKB:P20936 and ensembl:ENSP000002743761600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratcell adhesion involved_inNAS 8554802PMID:8344248UniProt 
Rasa1Ratcellular response to epidermal growth factor stimulus  IDA 10002731 RGD 
Rasa1Ratcellular response to fibroblast growth factor stimulus  IEP 2324642 RGD 
Rasa1Ratcellular response to platelet-derived growth factor stimulus  IDA 10002728 RGD 
Rasa1Ratmale genitalia development  IEP 9999420 RGD 
Rasa1Ratmitotic cytokinesis involved_inISSUniProtKB:Q54K321600115GO_REF:0000024UniProtGO_REF:0000024
Rasa1Ratnegative regulation of apoptotic process involved_inISSUniProtKB:P209361600115GO_REF:0000024UniProtGO_REF:0000024
Rasa1Ratnegative regulation of apoptotic process involved_inISORASA1 (Homo sapiens)1624291 PMID:15542850RGDPMID:15542850
Rasa1Ratnegative regulation of apoptotic process involved_inIEAUniProtKB:P20936 and ensembl:ENSP000002743761600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratnegative regulation of cell adhesion involved_inISSUniProtKB:P209361600115GO_REF:0000024UniProtGO_REF:0000024
Rasa1Ratnegative regulation of cell adhesion involved_inIEAUniProtKB:P20936 and ensembl:ENSP000002743761600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratnegative regulation of cell adhesion involved_inISORASA1 (Homo sapiens)1624291 PMID:8344248RGDPMID:8344248
Rasa1Ratnegative regulation of cell-matrix adhesion involved_inIEAUniProtKB:P20936 and ensembl:ENSP000002743761600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratnegative regulation of cell-matrix adhesion involved_inISORASA1 (Homo sapiens)1624291 PMID:8344248RGDPMID:8344248
Rasa1Ratnegative regulation of cell-matrix adhesion involved_inISSUniProtKB:P209361600115GO_REF:0000024UniProtGO_REF:0000024
Rasa1Ratnegative regulation of neuron apoptotic process involved_inISSUniProtKB:Q91YX71600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component

  
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Original Reference(s)
Rasa1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Rasa1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Rasa1Ratnuclear membrane  IDA 10041028 RGD 
Rasa1Ratplasma membrane located_inIEAUniProtKB:E9PYG6 and ensembl:ENSMUSP000001051791600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratplasma membrane located_inISORasa1 (Mus musculus)1624291 PMID:15860730RGDPMID:15860730
Rasa1Ratruffle located_inIEAUniProtKB:E9PYG6 and ensembl:ENSMUSP000001051791600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratruffle located_inISORasa1 (Mus musculus)1624291 PMID:15860730RGDPMID:15860730

Molecular Function
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Original Reference(s)
Rasa1RatGTPase activator activity  IDA 9999452 RGD 
Rasa1RatGTPase activator activity enablesISORASA1 (Homo sapiens)1624291 PMID:7478585RGDPMID:7478585
Rasa1RatGTPase activator activity enablesIEAUniProtKB-KW:KW-03431600115GO_REF:0000043UniProtGO_REF:0000043
Rasa1RatGTPase binding enablesIEAUniProtKB:P20936 and ensembl:ENSP000002743761600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1RatGTPase binding enablesISORASA1 (Homo sapiens)1624291UniProtKB:P01112 and PMID:2122974RGDPMID:2122974
Rasa1Ratkinase binding  IPIUniprotKB:P0052410002729 RGD 
Rasa1Ratphosphotyrosine residue binding enablesIEAUniProtKB:P20936 and ensembl:ENSP000002743761600115GO_REF:0000107EnsemblGO_REF:0000107
Rasa1Ratphosphotyrosine residue binding enablesISORASA1 (Homo sapiens)1624291UniProtKB:O84462 more ...RGDPMID:20624904
Rasa1Ratplatelet-derived growth factor receptor binding  IPIPdgfrb (Rattus norvegicus)10002733 RGD 
Rasa1Ratplatelet-derived growth factor receptor binding  IDA 10002728 RGD 
Rasa1Ratprotein binding  IPIArhgap35 (Rattus norvegicus)10002731 RGD 
Rasa1Ratprotein binding enablesISORasa1 (Mus musculus)1624291PR:O70469 more ...RGDPMID:9008161 and PMID:9697832
Rasa1Ratprotein binding enablesISORASA1 (Homo sapiens)1624291UniProtKB:P00533 more ...RGDPMID:1314164 more ...
Rasa1Ratprotein binding enablesIPIUniProtKB:Q1348021201274PMID:31585087IntAct 
Rasa1Ratprotein binding enablesIPIUniProtKB:Q8R5001304351PMID:15322553UniProt 
Rasa1Ratprotein binding  IPIKhdrbs1 (Rattus norvegicus)10002731 RGD 
Rasa1Ratprotein kinase B binding  IPIAkt1 (Rattus norvegicus)9999423 RGD 
Rasa1Ratprotein tyrosine kinase binding  IPIFyn (Rattus norvegicus)1642649 RGD 
Rasa1Ratprotein-containing complex binding  IPIPtk2b (Rattus norvegicus) and Anxa6 (Rattus norvegicus)1642649 RGD 
Rasa1Ratprotein-containing complex binding  IDA 10002731 RGD 
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RGD Manual Annotations


  
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Original Reference(s)
Rasa1Ratprotein kinase C (PKC) signaling pathway   IMP 10002727 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Rasa1Ratmitogen activated protein kinase signaling pathway   IEA 6907045 KEGGrno:04010

Imported Annotations - PID (archival)


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#
Reference Title
Reference Citation
1. RASA1: variable phenotype with capillary and arteriovenous malformations. Boon LM, etal., Curr Opin Genet Dev. 2005 Jun;15(3):265-9.
2. GTPase-activating protein interactions with the viral and cellular Src kinases. Brott BK, etal., Proc Natl Acad Sci U S A. 1991 Feb 1;88(3):755-9.
3. Two regions with differential growth-modulating activity in the N-terminal domain of ras GTPase-activating protein (p120GAP) src homology and Gly-Ala-Pro-rich regions. Chang JS, etal., Eur J Biochem. 1995 Sep 15;232(3):691-9.
4. Dysregulation of HSG triggers vascular proliferative disorders. Chen KH, etal., Nat Cell Biol 2004 Sep;6(9):872-83. Epub 2004 Aug 22.
5. Identification of a novel protein complex containing annexin VI, Fyn, Pyk2, and the p120(GAP) C2 domain. Chow A, etal., FEBS Lett. 2000 Mar 3;469(1):88-92.
6. Sequence of the cDNA encoding Ras GTPase-activating protein from rat. Davis MM, etal., Gene 1993 Dec 8;134(2):305-6.
7. Capillary malformation-arteriovenous malformation, a new clinical and genetic disorder caused by RASA1 mutations. Eerola I, etal., Am J Hum Genet 2003 Dec;73(6):1240-9.
8. Nonsense mutations in the C-terminal SH2 region of the GTPase activating protein (GAP) gene in human tumours. Friedman E, etal., Nat Genet 1993 Nov;5(3):242-7.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
11. PDGF-induced glycosaminoglycan synthesis is mediated via phosphatidylinositol 3-kinase. Liu J, etal., Am J Physiol. 1998 May;274(5 Pt 1):L702-13.
12. Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites. Lundby A, etal., Cell. 2019 Oct 3;179(2):543-560.e26. doi: 10.1016/j.cell.2019.09.008.
13. Purification of a novel ras GTPase-activating protein from rat brain. Maekawa M, etal., J Biol Chem. 1993 Oct 25;268(30):22948-52.
14. Insulin signal transduction in rat small intestine: role of MAP kinases in expression of mucosal hydrolases. Marandi S, etal., Am J Physiol Gastrointest Liver Physiol. 2001 Feb;280(2):G229-40.
15. The N-terminal region of GAP regulates cytoskeletal structure and cell adhesion. McGlade J, etal., EMBO J. 1993 Aug;12(8):3073-81.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Protein-tyrosine kinases regulate the phosphorylation, protein interactions, subcellular distribution, and activity of p21ras GTPase-activating protein. Moran MF, etal., Mol Cell Biol. 1991 Apr;11(4):1804-12.
18. Alterations in the subcellular distribution of p21ras-GTPase activating protein in proliferating rat acinar cells. Nakagawa Y, etal., Biochem Biophys Res Commun. 1992 Sep 16;187(2):1172-9.
19. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
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PMID:1756860   PMID:2122974   PMID:2157284   PMID:2176151   PMID:7478585   PMID:8183574   PMID:8798684   PMID:11970986   PMID:12008030   PMID:14643014   PMID:15542850   PMID:15860730  
PMID:16046410   PMID:20624904   PMID:22206666   PMID:23687085   PMID:34165173  



Rasa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8217,593,136 - 17,676,707 (-)NCBIGRCr8
mRatBN7.2215,857,704 - 15,940,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl215,857,980 - 15,940,854 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx222,959,727 - 23,040,229 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0221,059,980 - 21,140,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0215,733,780 - 15,814,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0213,617,021 - 13,696,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl213,616,822 - 13,696,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0213,470,580 - 13,551,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4214,203,815 - 14,287,824 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1214,124,183 - 14,208,193 (-)NCBI
Celera212,124,725 - 12,204,755 (-)NCBICelera
Cytogenetic Map2q11NCBI
RASA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38587,267,883 - 87,391,916 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl587,267,883 - 87,391,931 (+)EnsemblGRCh38hg38GRCh38
GRCh37586,563,700 - 86,687,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36586,599,907 - 86,723,489 (+)NCBINCBI36Build 36hg18NCBI36
Build 34586,600,521 - 86,723,488NCBI
Celera582,456,373 - 82,579,983 (+)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef581,768,403 - 81,891,908 (+)NCBIHuRef
CHM1_1585,997,132 - 86,120,771 (+)NCBICHM1_1
T2T-CHM13v2.0587,749,006 - 87,873,021 (+)NCBIT2T-CHM13v2.0
Rasa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391385,362,893 - 85,437,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1385,362,899 - 85,437,249 (-)EnsemblGRCm39 Ensembl
GRCm381385,214,699 - 85,289,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1385,214,780 - 85,289,130 (-)EnsemblGRCm38mm10GRCm38
MGSCv371385,354,304 - 85,429,091 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361385,689,136 - 85,729,574 (-)NCBIMGSCv36mm8
Celera1387,446,946 - 87,523,497 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.05NCBI
Rasa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541823,807,740 - 23,897,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541823,807,740 - 23,897,699 (-)NCBIChiLan1.0ChiLan1.0
RASA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2428,003,513 - 28,131,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1526,157,126 - 26,284,812 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0527,980,907 - 28,104,368 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1528,115,159 - 28,239,854 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl528,115,159 - 28,240,321 (-)Ensemblpanpan1.1panPan2
RASA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,068,182 - 21,177,288 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,054,930 - 21,176,757 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha322,433,878 - 22,542,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0320,976,854 - 21,085,576 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl320,963,599 - 21,086,379 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1320,947,976 - 21,056,165 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0320,910,527 - 21,018,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0321,202,248 - 21,310,549 (-)NCBIUU_Cfam_GSD_1.0
Rasa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213176,687,034 - 176,786,016 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364695,839,743 - 5,932,021 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364695,839,560 - 5,933,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl294,878,911 - 94,993,450 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1294,879,615 - 94,992,725 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2297,399,815 - 97,512,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RASA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1481,249,851 - 81,371,486 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl481,249,805 - 81,370,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604930,268,183 - 30,393,793 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rasa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247436,788,108 - 6,882,223 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247436,750,476 - 6,882,556 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rasa1
618 total Variants

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir212rno-miR-212-3pMirtarbaseexternal_infoImmunoblot//Luciferase reporter assay//qRT-PCRFunctional MTI22431733
Mir132rno-miR-132-3pMirtarbaseexternal_infoImmunoblot//Luciferase reporter assay//qRT-PCRFunctional MTI22431733

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:20
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000046251
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000046251   ⟹   ENSRNOP00000047300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl215,857,980 - 15,940,854 (-)Ensembl
Rnor_6.0 Ensembl213,616,822 - 13,696,426 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095572   ⟹   ENSRNOP00000088606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl215,857,980 - 15,940,854 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101798   ⟹   ENSRNOP00000092393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl215,857,980 - 15,940,854 (-)Ensembl
RefSeq Acc Id: NM_013135   ⟹   NP_037267
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8217,593,136 - 17,676,161 (-)NCBI
mRatBN7.2215,857,706 - 15,940,738 (-)NCBI
Rnor_6.0213,617,021 - 13,696,531 (-)NCBI
Rnor_5.0213,470,580 - 13,551,782 (-)NCBI
RGSC_v3.4214,203,815 - 14,287,824 (-)RGD
Celera212,124,725 - 12,204,755 (-)RGD
Sequence:
RefSeq Acc Id: XM_039101802   ⟹   XP_038957730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8217,593,136 - 17,676,707 (-)NCBI
mRatBN7.2215,857,704 - 15,940,757 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_037267 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957730 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA16319 (Get FASTA)   NCBI Sequence Viewer  
  EDM09977 (Get FASTA)   NCBI Sequence Viewer  
  EDM09978 (Get FASTA)   NCBI Sequence Viewer  
  EDM09979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000047300
  ENSRNOP00000106544
GenBank Protein P50904 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_037267   ⟸   NM_013135
- UniProtKB: P50904 (UniProtKB/Swiss-Prot),   G3V9H0 (UniProtKB/TrEMBL),   A6I4M1 (UniProtKB/TrEMBL),   A6I4L9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047300   ⟸   ENSRNOT00000046251
RefSeq Acc Id: XP_038957730   ⟸   XM_039101802
- Peptide Label: isoform X1
- UniProtKB: A6I4L9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088606   ⟸   ENSRNOT00000095572
Ensembl Acc Id: ENSRNOP00000092393   ⟸   ENSRNOT00000101798
C2   PH   Ras-GAP   SH2   SH3

Name Modeler Protein Id AA Range Protein Structure
AF-P50904-F1-model_v2 AlphaFold P50904 1-1038 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 60 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-54930 BioCyc
Ensembl Genes ENSRNOG00000029185 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000046251 ENTREZGENE
  ENSRNOT00000134396 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
  2.60.40.150 UniProtKB/Swiss-Prot
  3.30.505.10 UniProtKB/Swiss-Prot
  GTPase Activation - p120gap, domain 1 UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  Ras_GTPase UniProtKB/Swiss-Prot
  RasGAP_C_SH2 UniProtKB/Swiss-Prot
  RasGAP_CS UniProtKB/Swiss-Prot
  RasGAP_dom UniProtKB/Swiss-Prot
  RasGAP_N_SH2 UniProtKB/Swiss-Prot
  RasGAP_SH3 UniProtKB/Swiss-Prot
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
  SH2_dom_sf UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report rno:25676 UniProtKB/Swiss-Prot
NCBI Gene 25676 ENTREZGENE
PANTHER PTHR10194 UniProtKB/Swiss-Prot
  RAS GTPASE-ACTIVATING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam PF00168 UniProtKB/Swiss-Prot
  PF00169 UniProtKB/Swiss-Prot
  RasGAP UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
  SH3_1 UniProtKB/Swiss-Prot
PhenoGen Rasa1 PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot
  PS50004 UniProtKB/Swiss-Prot
  RAS_GTPASE_ACTIV_1 UniProtKB/Swiss-Prot
  RAS_GTPASE_ACTIV_2 UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
1 to 40 of 60 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-03 Rasa1  RAS p21 protein activator 1  Rasa1  RAS p21 protein activator (GTPase activating protein) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Rasa1  RAS p21 protein activator (GTPase activating protein) 1  Rasa1  RAS p21 protein activator 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2000-11-11 Rasa1  RAS p21 protein activator 1      Symbol updated 61033 APPROVED
2000-11-11 Rasa  RAS p21 protein activator      Symbol withdrawn 61033 WITHDRAWN