Rab4a (RAB4A, member RAS oncogene family) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rab4a (RAB4A, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab4a
Name: RAB4A, member RAS oncogene family
RGD ID: 3529
Description: Enables several functions, including ATPase binding activity; GTP binding activity; and ionotropic glutamate receptor binding activity. Involved in Rab protein signal transduction. Located in insulin-responsive compartment and recycling endosome. Is active in synaptic vesicle membrane. Orthologous to human RAB4A (RAB4A, member RAS oncogene family); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; Rab family mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Rab4; ras-related protein Rab-4A; Ras-related small GTP binding protein 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,692,228 - 68,720,169 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1968,692,890 - 68,720,166 (+)EnsemblGRCr8
mRatBN7.21951,795,613 - 51,822,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,795,613 - 51,822,703 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1958,586,931 - 58,614,024 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,431,649 - 59,458,731 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,513,357 - 61,540,448 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,585,598 - 56,613,078 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,585,767 - 56,613,075 (+)Ensemblrn6Rnor6.0
Rnor_5.01967,296,402 - 67,323,425 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41953,991,122 - 54,019,248 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1951,171,470 - 51,198,520 (+)NCBICelera
RGSC_v3.11953,996,067 - 54,022,738 (+)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
cerivastatin  (EXP)
CGP 52608  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dichlorine  (EXP)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
endosulfan  (EXP)
epoxiconazole  (ISO)
fenthion  (ISO)
flutamide  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
haloperidol  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
okadaic acid  (ISO)
ozone  (EXP)
paracetamol  (ISO)
parathion  (ISO)
PCB138  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
tamibarotene  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Insulin and okadaic acid induce Rab4 redistribution in adipocytes. Cormont M, etal., J Biol Chem. 1993 Sep 15;268(26):19491-7.
2. Rho proteins are localized with different membrane compartments involved in vesicular trafficking in anterior pituitary cells. Cussac D, etal., Mol Cell Endocrinol. 1996 May 31;119(2):195-206.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Identification of Rab6 as an N-ethylmaleimide-sensitive fusion protein-binding protein. Han SY, etal., Biochem J 2000 Nov 15;352 Pt 1:165-73.
6. Neuron specific Rab4 effector GRASP-1 coordinates membrane specialization and maturation of recycling endosomes. Hoogenraad CC, etal., PLoS Biol. 2010 Jan 19;8(1):e1000283. doi: 10.1371/journal.pbio.1000283.
7. Rab proteins in endocytosis and Glut4 trafficking. Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
8. Rac and Rab GTPases dual effector Nischarin regulates vesicle maturation to facilitate survival of intracellular bacteria. Kuijl C, etal., EMBO J. 2013 Mar 6;32(5):713-27. doi: 10.1038/emboj.2013.10. Epub 2013 Feb 5.
9. Direct interaction of Rab4 with syntaxin 4. Li L, etal., J Biol Chem. 2001 Feb 16;276(7):5265-73. Epub 2000 Nov 3.
10. Neuronal proteins involved in synaptic targeting of AMPA receptors in rat hippocampus by antidepressant drugs. Martinez-Turrillas R, etal., Biochem Biophys Res Commun. 2007 Feb 16;353(3):750-5. Epub 2006 Dec 19.
11. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis. Pavlos NJ, etal., J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. GOA pipeline RGD automated data pipeline
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Parallel changes in Glut 4 and Rab4 movements in two insulin-resistant states. Ricort JM, etal., FEBS Lett. 1994 Jun 20;347(1):42-4.
19. EARP is a multisubunit tethering complex involved in endocytic recycling. Schindler C, etal., Nat Cell Biol. 2015 May;17(5):639-50. doi: 10.1038/ncb3129. Epub 2015 Mar 23.
20. Differential effects of insulin and exercise on Rab4 distribution in rat skeletal muscle. Sherman LA, etal., Endocrinology. 1996 Jan;137(1):266-73.
21. Insulin stimulates guanine nucleotide exchange on Rab4 via a wortmannin-sensitive signaling pathway in rat adipocytes. Shibata H, etal., J Biol Chem. 1997 Jun 6;272(23):14542-6.
22. Failure of insulin-regulated recruitment of the glucose transporter GLUT4 in cardiac muscle of obese Zucker rats is associated with alterations of small-molecular-mass GTP-binding proteins. Uphues I, etal., Biochem J 1995 Oct 1;311 ( Pt 1):161-6.
23. Insulin-induced translocation of the glucose transporter GLUT4 in cardiac muscle: studies on the role of small-molecular-mass GTP-binding proteins. Uphues I, etal., Biochem J. 1994 Jul 1;301 ( Pt 1):177-82.
24. A tubular endosomal fraction from rat liver: biochemical evidence of receptor sorting by default. Verges M, etal., Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10146-51.
25. GLUT4 translocation: the last 200 nanometers. Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
26. Complete coding sequences of the ras related rab 3 and 4 cDNAs. Zahraoui A, etal., Nucleic Acids Res 1988 Feb 11;16(3):1204.
27. Insulin action on glucose transporters through molecular switches, tracks and tethers. Zaid H, etal., Biochem J. 2008 Jul 15;413(2):201-15.
Additional References at PubMed
PMID:3317403   PMID:11172003   PMID:12477932   PMID:12703553   PMID:15128739   PMID:15326289   PMID:15907487   PMID:16034420   PMID:17494101   PMID:17562788   PMID:18656450   PMID:19590752  
PMID:19717423   PMID:20051515   PMID:20728450   PMID:22279005   PMID:22980744   PMID:26254426   PMID:28818525  


Genomics

Comparative Map Data
Rab4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,692,228 - 68,720,169 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1968,692,890 - 68,720,166 (+)EnsemblGRCr8
mRatBN7.21951,795,613 - 51,822,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,795,613 - 51,822,703 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1958,586,931 - 58,614,024 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,431,649 - 59,458,731 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,513,357 - 61,540,448 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,585,598 - 56,613,078 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,585,767 - 56,613,075 (+)Ensemblrn6Rnor6.0
Rnor_5.01967,296,402 - 67,323,425 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41953,991,122 - 54,019,248 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1951,171,470 - 51,198,520 (+)NCBICelera
RGSC_v3.11953,996,067 - 54,022,738 (+)NCBI
Cytogenetic Map19q12NCBI
RAB4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381229,271,111 - 229,305,894 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1229,271,062 - 229,305,894 (+)Ensemblhg38GRCh38
GRCh371229,406,858 - 229,441,641 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,473,502 - 227,507,141 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341225,713,613 - 225,747,252NCBI
Celera1202,675,200 - 202,708,836 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,897,464 - 199,932,284 (+)NCBIHuRef
CHM1_11230,679,139 - 230,713,964 (+)NCBICHM1_1
T2T-CHM13v2.01228,649,787 - 228,684,556 (+)NCBIT2T-CHM13v2.0
Rab4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,532,748 - 124,562,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,532,724 - 124,562,026 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388123,805,846 - 123,835,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,805,985 - 123,835,287 (+)Ensemblmm10GRCm38
MGSCv378126,329,896 - 126,359,191 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368126,692,115 - 126,721,377 (+)NCBIMGSCv36mm8
Celera8128,073,037 - 128,102,572 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.19NCBI
Rab4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,713,968 - 8,743,434 (-)Ensembl
ChiLan1.0NW_0049554928,715,252 - 8,743,432 (-)NCBIChiLan1.0ChiLan1.0
RAB4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,907,239 - 19,942,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1120,099,505 - 20,130,356 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01204,818,445 - 204,849,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11209,848,620 - 209,883,305 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1209,848,620 - 209,883,305 (+)EnsemblpanPan2panpan1.1
RAB4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,914,681 - 9,965,468 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl49,916,235 - 9,965,469 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha49,906,049 - 9,956,928 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.049,945,626 - 9,996,957 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl49,941,226 - 9,997,643 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.149,949,479 - 10,000,571 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0410,063,339 - 10,113,821 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0410,316,763 - 10,367,878 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rab4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,116,269 - 44,136,517 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648420,281,435 - 20,301,391 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648420,281,495 - 20,301,906 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1460,481,488 - 60,529,095 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11460,481,484 - 60,528,549 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,322,929 - 65,370,292 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12566,540,462 - 66,574,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2566,540,549 - 66,572,173 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605568,386,203 - 68,420,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,739,086 - 19,762,436 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477519,738,220 - 19,762,351 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab4a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11743,352,208 - 43,380,803 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:364
Count of miRNA genes:204
Interacting mature miRNAs:232
Transcripts:ENSRNOT00000049337
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
RH127889  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,822,471 - 51,822,651 (+)MAPPERmRatBN7.2
Rnor_6.01956,612,844 - 56,613,023NCBIRnor6.0
Rnor_5.01967,323,191 - 67,323,370UniSTSRnor5.0
RGSC_v3.41954,019,013 - 54,019,193UniSTSRGSC3.4
Celera1951,198,286 - 51,198,465UniSTS
RH 3.4 Map19739.2UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000049337   ⟹   ENSRNOP00000048878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,692,890 - 68,720,166 (+)Ensembl
mRatBN7.2 Ensembl1951,795,613 - 51,822,703 (+)Ensembl
Rnor_6.0 Ensembl1956,585,767 - 56,613,075 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098153   ⟹   ENSRNOP00000094575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,694,155 - 68,720,166 (+)Ensembl
mRatBN7.2 Ensembl1951,796,687 - 51,822,703 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102307   ⟹   ENSRNOP00000077230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,696,383 - 68,720,166 (+)Ensembl
mRatBN7.2 Ensembl1951,798,789 - 51,822,703 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000140654   ⟹   ENSRNOP00000110171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,694,769 - 68,720,166 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142887   ⟹   ENSRNOP00000099338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,709,283 - 68,720,166 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167653   ⟹   ENSRNOP00000107903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,699,344 - 68,720,166 (+)Ensembl
RefSeq Acc Id: NM_013019   ⟹   NP_037151
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,693,081 - 68,720,169 (+)NCBI
mRatBN7.21951,795,613 - 51,822,706 (+)NCBI
Rnor_6.01956,585,767 - 56,613,078 (+)NCBI
Rnor_5.01967,296,402 - 67,323,425 (+)NCBI
RGSC_v3.41953,991,122 - 54,019,248 (+)RGD
Celera1951,171,470 - 51,198,520 (+)RGD
Sequence:
RefSeq Acc Id: XM_063277800   ⟹   XP_063133870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,692,228 - 68,717,534 (+)NCBI
RefSeq Acc Id: XM_063277801   ⟹   XP_063133871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,710,782 - 68,720,169 (+)NCBI
Protein Sequences
Protein RefSeqs NP_037151 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133870 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133871 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62016 (Get FASTA)   NCBI Sequence Viewer  
  CAA30006 (Get FASTA)   NCBI Sequence Viewer  
  EDL96711 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048878
  ENSRNOP00000048878.4
GenBank Protein P05714 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037151   ⟸   NM_013019
- UniProtKB: Q6P6U4 (UniProtKB/Swiss-Prot),   P05714 (UniProtKB/Swiss-Prot),   A0A8I5ZK92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048878   ⟸   ENSRNOT00000049337
Ensembl Acc Id: ENSRNOP00000094575   ⟸   ENSRNOT00000098153
Ensembl Acc Id: ENSRNOP00000077230   ⟸   ENSRNOT00000102307
RefSeq Acc Id: XP_063133870   ⟸   XM_063277800
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133871   ⟸   XM_063277801
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000099338   ⟸   ENSRNOT00000142887
Ensembl Acc Id: ENSRNOP00000110171   ⟸   ENSRNOT00000140654
Ensembl Acc Id: ENSRNOP00000107903   ⟸   ENSRNOT00000167653

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P05714-F1-model_v2 AlphaFold P05714 1-218 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701229
Promoter ID:EPDNEW_R11753
Type:multiple initiation site
Name:Rab4a_1
Description:RAB4A, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01956,585,768 - 56,585,828EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3529 AgrOrtholog
BioCyc Gene G2FUF-5267 BioCyc
Ensembl Genes ENSRNOG00000017467 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000049337 ENTREZGENE
  ENSRNOT00000049337.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621494 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Rab4 UniProtKB/Swiss-Prot
  Rab_GTPases_membrane_traffic UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot
KEGG Report rno:25532 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72520 IMAGE-MGC_LOAD
NCBI Gene 25532 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/Swiss-Prot
Pfam Ras UniProtKB/Swiss-Prot
PhenoGen Rab4a PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot
PROSITE RAB UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017467 RatGTEx
SMART ARF UniProtKB/Swiss-Prot
  RAB UniProtKB/Swiss-Prot
  RAN UniProtKB/Swiss-Prot
  RAS UniProtKB/Swiss-Prot
  RHO UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I5ZK92 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GL86_RAT UniProtKB/TrEMBL
  A0ABK0KXQ7_RAT UniProtKB/TrEMBL
  A0ABK0LV62_RAT UniProtKB/TrEMBL
  A0ABK0M4F5_RAT UniProtKB/TrEMBL
  A6KIY9_RAT UniProtKB/TrEMBL
  P05714 ENTREZGENE
  Q6P6U4 ENTREZGENE
  RAB4A_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6P6U4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Rab4a  RAB4A, member RAS oncogene family  Rab4  Ras-related small GTP binding protein 4  Symbol and Name updated 629477 APPROVED
2002-06-10 Rab4  Ras-related small GTP binding protein 4      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation displays increased localization to the cytosol from the plasma membrane in response to insulin 735238