Map2 (microtubule-associated protein 2) - Rat Genome Database

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Gene: Map2 (microtubule-associated protein 2) Rattus norvegicus
Analyze
Symbol: Map2
Name: microtubule-associated protein 2
RGD ID: 3044
Description: Enables SH2 domain binding activity; cytoskeletal protein binding activity; and protein kinase binding activity. Involved in several processes, including negative regulation of cellular component organization; positive regulation of vesicle transport along microtubule; and response to progesterone. Located in several cellular components, including axon; cytoskeleton; and dendrite. Part of protein-containing complex. Is active in glutamatergic synapse and postsynapse. Used to study Alzheimer's disease and cerebral infarction. Biomarker of arteriovenous malformation; asphyxia neonatorum; brain ischemia; sciatic neuropathy; and temporal lobe epilepsy. Orthologous to human MAP2 (microtubule associated protein 2); INTERACTS WITH (S)-3,5-dihydroxyphenylglycine; 1-naphthyl isothiocyanate; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MAP-2; MAP2R; microtubule-associated protein 2C; Mtap2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,173,038 - 75,431,606 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl975,288,262 - 75,428,459 (+)EnsemblGRCr8
mRatBN7.2967,723,422 - 67,981,886 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl967,723,371 - 67,979,809 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx976,387,776 - 76,469,106 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0981,515,139 - 81,596,514 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0979,899,162 - 79,986,857 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,204,753 - 73,462,965 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,319,710 - 73,462,972 (+)Ensemblrn6Rnor6.0
Rnor_5.0973,837,509 - 74,095,431 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4965,174,376 - 65,256,003 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera965,377,941 - 65,459,391 (+)NCBICelera
RGSC_v3.1965,321,360 - 65,402,977 (+)NCBI
RH 3.4 Map9593.2RGD
Cytogenetic Map9q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-cotinine  (ISO)
(20S)-ginsenoside Rg3  (ISO)
(S)-3,5-dihydroxyphenylglycine  (EXP)
(S)-colchicine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,5-hexanedione  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3',5'-cyclic AMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methyladenine  (EXP)
5-fluorouracil  (ISO)
9-cis-retinoic acid  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
agomelatine  (EXP)
aldicarb  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aluminium sulfate (anhydrous)  (EXP)
amantadine  (ISO)
ammonia  (EXP)
ammonium chloride  (EXP)
Anatoxin a  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aripiprazole  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenous acid  (ISO)
azithromycin  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (EXP)
bucladesine  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcidiol  (EXP)
Calpeptin  (EXP)
capsaicin  (ISO)
carbaryl  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorohydrocarbon  (EXP)
chloroquine  (EXP)
chlorpromazine  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
Cuprizon  (EXP)
cyanocob(III)alamin  (EXP)
Cyclopamine  (EXP)
cyclosporin A  (ISO)
cypermethrin  (EXP)
cyproconazole  (ISO)
cytarabine  (ISO)
DAPT  (ISO)
DDE  (ISO)
DDT  (EXP)
deguelin  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dichlorvos  (EXP)
dieldrin  (ISO)
diethyl hydrogen phosphate  (ISO)
diethyl phthalate  (ISO)
dihydrolipoic acid  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enzalutamide  (ISO)
ethanol  (EXP,ISO)
folic acid  (ISO)
FR900359  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (EXP)
ginsenoside Rb1  (ISO)
ginsenoside Rd  (ISO)
ginsenoside Re  (ISO)
ginsenoside Rg1  (ISO)
glutathione  (ISO)
glyphosate  (ISO)
haloperidol  (EXP)
heptachlor  (ISO)
hexachlorophene  (ISO)
hydrogen peroxide  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
kainic acid  (ISO)
L-ascorbic acid  (EXP,ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
LY294002  (ISO)
maneb  (ISO)
manganese(II) chloride  (EXP)
melatonin  (ISO)
melittin  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methylglyoxal  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
monosodium L-glutamate  (ISO)
morphine  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
nicotinic acid  (EXP)
nimodipine  (EXP)
nitrofen  (EXP)
Nivalenol  (ISO)
olanzapine  (EXP)
oxaliplatin  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PD123319  (EXP)
permethrin  (EXP)
phenethyl isothiocyanate  (EXP)
phenylmercury acetate  (ISO)
physostigmine  (ISO)
picoxystrobin  (ISO)
poly(vinylpyrrolidone)  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP,ISO)
pyrimidifen  (ISO)
pyrroloquinoline quinone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
risperidone  (EXP)
rotenone  (EXP,ISO)
S-nitrosoglutathione  (ISO)
Salidroside  (ISO)
sarin  (EXP)
SB 431542  (ISO)
scopolamine  (ISO)
selenium atom  (ISO)
sevoflurane  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
silver(1+) nitrate  (ISO)
sirolimus  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (EXP,ISO)
sulforaphane  (ISO)
tetrachloromethane  (EXP,ISO)
thifluzamide  (ISO)
thiram  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
Tryptanthrine  (ISO)
valproic acid  (EXP,ISO)
valsartan  (EXP)
venlafaxine hydrochloride  (EXP)
WIN 55212-2  (ISO)
Withanone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The phosphorylation state of threonine-220, a uniquely phosphatase-sensitive protein kinase A site in microtubule-associated protein MAP2c, regulates microtubule binding and stability. Alexa A, etal., Biochemistry 2002 Oct 15;41(41):12427-35.
2. Structural basis of binding the unique N-terminal domain of microtubule-associated protein 2c to proteins regulating kinases of signaling pathways. Bartošík V, etal., J Biol Chem. 2024 Aug;300(8):107551. doi: 10.1016/j.jbc.2024.107551. Epub 2024 Jul 11.
3. An experimental rat model of sporadic Alzheimer's disease and rescue of cognitive impairment with a neurotrophic peptide. Bolognin S, etal., Acta Neuropathol. 2012 Jan;123(1):133-51. Epub 2011 Nov 15.
4. A mouse model of term chorioamnionitis: unraveling causes of adverse neurological outcomes. Burd I, etal., Reprod Sci. 2011 Sep;18(9):900-7. Epub 2011 Mar 18.
5. Immunocytochemical localization of tubulin and the high molecular weight microtubule-associated protein 2 in Purkinje cell dendrites deprived of climbing fibers. Caceres A and Dotti C, Neuroscience. 1985 Sep;16(1):133-50.
6. Short- and long-term treatment with estradiol or progesterone modifies the expression of GFAP, MAP2 and Tau in prefrontal cortex and hippocampus. Camacho-Arroyo I, etal., Life Sci. 2011 Jul 18;89(3-4):123-8. doi: 10.1016/j.lfs.2011.05.008. Epub 2011 Jun 12.
7. Expression changes of parvalbumin and microtubule-associated protein 2 induced by chronic constriction injury in rat dorsal root ganglia. Cao MH, etal., Chin Med J (Engl). 2011 Jul;124(14):2184-90.
8. Compression alters kinase and phosphatase activity and tau and MAP2 phosphorylation transiently while inducing the fast adaptive dendritic remodeling of underlying cortical neurons. Chen LJ, etal., J Neurotrauma. 2010 Sep;27(9):1657-69.
9. Activity-dependent validation of excitatory versus inhibitory synapses by neuroligin-1 versus neuroligin-2. Chubykin AA, etal., Neuron. 2007 Jun 21;54(6):919-31.
10. Nucleotide and amino acid sequences of embryonic rat MAP2c. Doll T, etal., Nucleic Acids Res 1990 Jan 25;18(2):361.
11. Treatment of experimental spinal cord injury with 3beta-methoxy-pregnenolone. Duchossoy Y, etal., Brain Res. 2011 Jul 27;1403:57-66. Epub 2011 Jun 12.
12. Interaction of microtubule-associated protein-2 and p63: a new link between microtubules and rough endoplasmic reticulum membranes in neurons. Farah CA, etal., J Biol Chem. 2005 Mar 11;280(10):9439-49. Epub 2004 Dec 28.
13. Complete sequence of rat MAP2d, a novel MAP2 isoform. Ferhat L, etal., C R Acad Sci III 1994 Apr;317(4):304-9.
14. Microtubule formation and neurite growth in cerebellar macroneurons which develop in vitro: evidence for the involvement of the microtubule-associated proteins, MAP-1a, HMW-MAP2 and Tau. Ferreira A, etal., Brain Res Dev Brain Res. 1989 Oct 1;49(2):215-28.
15. Differential localization of high- and low-molecular-weight variants of microtubule-associated protein 2 in the developing rat telencephalon. Fujimori K, etal., J Comp Neurol 2002 Aug 5;449(4):330-42.
16. Morphological Alteration and Reduction of MAP2-Immunoreactivity in Pyramidal Neurons of Cerebral Cortex in a Rat Model of Focal Cortical Compression. Furutani R and Kibayashi K, J Neurotrauma. 2012 Apr 10;29(6):1266-76. Epub 2011 Aug 5.
17. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
18. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
19. MAP2 Defines a Pre-axonal Filtering Zone to Regulate KIF1- versus KIF5-Dependent Cargo Transport in Sensory Neurons. Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
20. Cognitive impairment and changes of neuronal plasticity in rats of chronic cerebral hypoperfusion associated with cerebral arteriovenous malformations. Hai J, etal., Acta Neurol Belg. 2010 Jun;110(2):180-5.
21. MAP2 is required for dendrite elongation, PKA anchoring in dendrites, and proper PKA signal transduction. Harada A, etal., J Cell Biol 2002 Aug 5;158(3):541-9.
22. NMDA receptor activation suppresses microtubule growth and spine entry. Kapitein LC, etal., J Neurosci. 2011 Jun 1;31(22):8194-209.
23. Molecular characterization of dendritically localized transcripts encoding MAP2. Kindler S, etal., Brain Res Mol Brain Res 1996 Feb;36(1):63-9.
24. Complete cDNA sequence encoding rat high and low molecular weight MAP2. Kindler S, etal., Nucleic Acids Res 1990 May 11;18(9):2822.
25. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
26. Nascent structure in the kinase anchoring domain of microtubule-associated protein 2. Malmendal A, etal., Biochem Biophys Res Commun 2003 Jan 31;301(1):136-42.
27. Cloning and partial sequencing of a new rat brain specific cDNA. Marechal D, etal., Arch Int Physiol Biochim 1988 Dec;96(5):231-6.
28. Microtubule-associated protein 2 and tubulin are differently distributed in the dendrites of developing neurons. Matus A, etal., Neuroscience. 1986 Feb;17(2):371-89.
29. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
30. Distribution of MAP2 in dendritic spines and its colocalization with actin. An immunogold electron-microscope study. Morales M and Fifkova E, Cell Tissue Res. 1989 Jun;256(3):447-56. doi: 10.1007/BF00225592.
31. Lewy body variant of Alzheimer's disease: selective neocortical loss of t-SNARE proteins and loss of MAP2 and alpha-synuclein in medial temporal lobe. Mukaetova-Ladinska EB, etal., ScientificWorldJournal. 2009 Dec 16;9:1463-75.
32. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
33. The RII subunit of cAMP-dependent protein kinase binds to a common amino-terminal domain in microtubule-associated proteins 2A, 2B, and 2C. Obar RA, etal., Neuron. 1989 Nov;3(5):639-45.
34. Phosphorylation-dependent localization of microtubule-associated protein MAP2c to the actin cytoskeleton. Ozer RS and Halpain S, Mol Biol Cell. 2000 Oct;11(10):3573-87.
35. Microtubule-associated protein 2, an early blood marker of ischemic brain injury. Park D, etal., J Neurosci Res. 2012 Feb;90(2):461-7. doi: 10.1002/jnr.22769. Epub 2011 Sep 21.
36. Spatial, temporal and subcellular localization of islet-brain 1 (IB1), a homologue of JIP-1, in mouse brain. Pellet JB, etal., Eur J Neurosci. 2000 Feb;12(2):621-32.
37. Estradiol and progesterone modify microtubule associated protein 2 content in the rat hippocampus. Reyna-Neyra A, etal., Brain Res Bull 2002 Sep 30;58(6):607-12.
38. GOA pipeline RGD automated data pipeline
39. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
40. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
41. Nitric oxide affects the phosphorylation state of microtubule-associated protein 2 (MAP-2) and neurofilament: an immunocytochemical study in the brain of rats and neuronal nitric oxide synthase (nNOS)-knockouts. Rothe F, etal., Nitric Oxide 2002 Feb;6(1):9-17.
42. Green Tea-EGCG reduces GFAP associated neuronal loss in HIV-1 Tat transgenic mice. Rrapo E, etal., Am J Transl Res. 2009 Jan 1;1(1):72-9.
43. Effects of perinatal asphyxia on rat striatal cytoskeleton. Saraceno GE, etal., Synapse. 2012 Jan;66(1):9-19. doi: 10.1002/syn.20978. Epub 2011 Oct 11.
44. A comparative study of MAP2 immunostaining in areas 9 and 17 in schizophrenia and Huntington chorea. Somenarain L and Jones LB, J Psychiatr Res. 2010 Aug;44(11):694-9. Epub 2010 Jan 22.
45. Transcortical alterations in Na(+)-K+ ATPase and microtubule-associated proteins immunoreactivity in the rat cortical atrophy model induced by hypoxic ischemia. Suh JG, etal., Neural Plast 2002;9(3):135-46.
46. Dynamic Palmitoylation Targets MAP6 to the Axon to Promote Microtubule Stabilization during Neuronal Polarization. Tortosa E, etal., Neuron. 2017 May 17;94(4):809-825.e7. doi: 10.1016/j.neuron.2017.04.042.
47. Post-ischemic hypothermia promotes generation of neural cells and reduces apoptosis by Bcl-2 in the striatum of neonatal rat brain. Xiong M, etal., Neurochem Int. 2011 May;58(6):625-33. Epub 2011 Feb 12.
48. BACE1 elevation is associated with aberrant limbic axonal sprouting in epileptic CD1 mice. Yan XX, etal., Exp Neurol. 2012 May;235(1):228-37. Epub 2012 Jan 11.
49. DGKiota regulates presynaptic release during mGluR-dependent LTD. Yang J, etal., EMBO J. 2011 Jan 5;30(1):165-80. doi: 10.1038/emboj.2010.286. Epub 2010 Nov 30.
50. Functional improvement and neuroplastic effects of anodal transcranial direct current stimulation (tDCS) delivered 1day vs. 1week after cerebral ischemia in rats. Yoon KJ, etal., Brain Res. 2012 May 3;1452:61-72. Epub 2012 Mar 5.
51. The RNA-binding protein MARTA2 regulates dendritic targeting of MAP2 mRNAs in rat neurons. Zivraj KH, etal., J Neurochem. 2013 Mar;124(5):670-84. doi: 10.1111/jnc.12079. Epub 2013 Jan 20.
Additional References at PubMed
PMID:2174050   PMID:2770869   PMID:3147150   PMID:8282767   PMID:8282771   PMID:8535073   PMID:8631898   PMID:8990203   PMID:10542369   PMID:11145988   PMID:11581286   PMID:11834298  
PMID:11891784   PMID:12074840   PMID:12477932   PMID:12834896   PMID:14989172   PMID:15048929   PMID:15246990   PMID:15255972   PMID:15307151   PMID:15656993   PMID:15834957   PMID:15964096  
PMID:15964665   PMID:15996550   PMID:16000625   PMID:16002213   PMID:16537405   PMID:16597486   PMID:16641100   PMID:16708014   PMID:16892058   PMID:16901895   PMID:16980967   PMID:17114649  
PMID:17141532   PMID:17229541   PMID:17360631   PMID:17573185   PMID:17984326   PMID:18165320   PMID:18268009   PMID:18290605   PMID:18341635   PMID:18359573   PMID:18455509   PMID:18467524  
PMID:18497889   PMID:18584320   PMID:18978811   PMID:19009287   PMID:19141977   PMID:19208628   PMID:19292454   PMID:19447092   PMID:19646951   PMID:19666135   PMID:20513368   PMID:20600662  
PMID:20846339   PMID:20967947   PMID:21869818   PMID:21948316   PMID:22022532   PMID:22456537   PMID:22490839   PMID:22763971   PMID:22871113   PMID:23861879   PMID:23877929   PMID:23904609  
PMID:24035762   PMID:24554721   PMID:25592752   PMID:25918374   PMID:26071842   PMID:26682524   PMID:27265094   PMID:27335427   PMID:28131823   PMID:28258221   PMID:29476059   PMID:31168983  
PMID:31471737   PMID:31841640   PMID:31996007   PMID:32237183   PMID:32357304   PMID:34576050   PMID:34643252  


Genomics

Comparative Map Data
Map2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,173,038 - 75,431,606 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl975,288,262 - 75,428,459 (+)EnsemblGRCr8
mRatBN7.2967,723,422 - 67,981,886 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl967,723,371 - 67,979,809 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx976,387,776 - 76,469,106 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0981,515,139 - 81,596,514 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0979,899,162 - 79,986,857 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,204,753 - 73,462,965 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,319,710 - 73,462,972 (+)Ensemblrn6Rnor6.0
Rnor_5.0973,837,509 - 74,095,431 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4965,174,376 - 65,256,003 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera965,377,941 - 65,459,391 (+)NCBICelera
RGSC_v3.1965,321,360 - 65,402,977 (+)NCBI
RH 3.4 Map9593.2RGD
Cytogenetic Map9q32NCBI
MAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382209,424,047 - 209,734,112 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2209,423,988 - 209,734,235 (+)Ensemblhg38GRCh38
GRCh372210,288,771 - 210,598,836 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362209,997,016 - 210,307,079 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342210,269,908 - 210,421,484NCBI
Celera2204,056,618 - 204,366,628 (+)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2202,133,889 - 202,443,633 (+)NCBIHuRef
CHM1_12210,294,619 - 210,604,654 (+)NCBICHM1_1
T2T-CHM13v2.02209,904,237 - 210,214,222 (+)NCBIT2T-CHM13v2.0
Map2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,214,337 - 66,481,742 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl166,214,432 - 66,481,742 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38166,175,202 - 66,442,583 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,175,273 - 66,442,583 (+)Ensemblmm10GRCm38
MGSCv37166,221,903 - 66,489,157 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36166,108,521 - 66,375,797 (+)NCBIMGSCv36mm8
Celera166,699,319 - 66,964,492 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.49NCBI
Map2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554575,678,436 - 5,875,024 (-)Ensembl
ChiLan1.0NW_0049554575,678,826 - 5,816,114 (-)NCBIChiLan1.0ChiLan1.0
MAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213112,046,732 - 112,357,145 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B112,061,728 - 112,372,130 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B96,681,268 - 96,991,650 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B215,085,476 - 215,395,439 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B215,314,857 - 215,391,728 (+)EnsemblpanPan2panpan1.1
MAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13717,316,899 - 17,611,360 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3717,466,678 - 17,607,803 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3718,197,871 - 18,492,089 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03717,252,304 - 17,547,172 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3717,260,892 - 17,545,422 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13717,357,768 - 17,502,660 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03717,171,196 - 17,465,399 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03717,188,565 - 17,479,742 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Map2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303165,843,181 - 166,122,293 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936845473,366 - 545,135 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936845475,406 - 752,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15112,236,119 - 112,462,929 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115112,156,578 - 112,462,932 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,033,358 - 124,184,546 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11095,319,649 - 95,431,106 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1095,349,157 - 95,431,320 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040103,915,685 - 104,226,077 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Map2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247656,476,346 - 6,546,116 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247656,476,544 - 6,758,959 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Map2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14140,382,053 - 140,640,979 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Map2
1256 total Variants
miRNA Target Status (No longer updated)

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir26a1rno-miR-26a-5pMirtarbaseexternal_infoWestern blotFunctional MTI17592044

Predicted Target Of
Summary Value
Count of predictions:181
Count of miRNA genes:109
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000037974, ENSRNOT00000043627, ENSRNOT00000045766
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
D10Chm45  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2967,979,993 - 67,980,297 (+)MAPPERmRatBN7.2
Rnor_6.0973,461,080 - 73,461,383NCBIRnor6.0
Rnor_5.0973,839,091 - 73,839,394UniSTSRnor5.0
RGSC_v3.4965,257,702 - 65,258,005UniSTSRGSC3.4
Celera965,461,090 - 65,461,393UniSTS
Cytogenetic Map9q32UniSTS
D10Chm64  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2967,980,006 - 67,980,297 (+)MAPPERmRatBN7.2
Rnor_6.0973,461,093 - 73,461,383NCBIRnor6.0
Rnor_5.0973,839,091 - 73,839,381UniSTSRnor5.0
RGSC_v3.4965,257,715 - 65,258,005UniSTSRGSC3.4
Celera965,461,103 - 65,461,393UniSTS
Cytogenetic Map9q32UniSTS
D9Wox30  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2967,981,231 - 67,981,318 (+)MAPPERmRatBN7.2
Rnor_6.0973,462,318 - 73,462,404NCBIRnor6.0
Rnor_5.0973,838,070 - 73,838,156UniSTSRnor5.0
RGSC_v3.4965,258,940 - 65,259,026UniSTSRGSC3.4
Celera965,462,328 - 65,462,414UniSTS
Cytogenetic Map9q32UniSTS
RH94590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2967,978,164 - 67,978,264 (+)MAPPERmRatBN7.2
Rnor_6.0973,459,251 - 73,459,350NCBIRnor6.0
Rnor_5.0973,841,124 - 73,841,223UniSTSRnor5.0
RGSC_v3.4965,255,873 - 65,255,972UniSTSRGSC3.4
Celera965,459,261 - 65,459,360UniSTS
RH 3.4 Map9593.2UniSTS
Cytogenetic Map9q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 66 165 90 89 58 55 58 6 316 153 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB075604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U30937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U30938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X17682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X51842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X54100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X74211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000037974   ⟹   ENSRNOP00000031915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,288,262 - 75,428,459 (+)Ensembl
mRatBN7.2 Ensembl967,723,371 - 67,979,809 (+)Ensembl
Rnor_6.0 Ensembl973,378,111 - 73,459,278 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000043627   ⟹   ENSRNOP00000042029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,303,133 - 75,428,007 (+)Ensembl
mRatBN7.2 Ensembl967,897,011 - 67,978,285 (+)Ensembl
Rnor_6.0 Ensembl973,378,057 - 73,459,386 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000045766   ⟹   ENSRNOP00000050877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,303,133 - 75,428,007 (+)Ensembl
mRatBN7.2 Ensembl967,896,967 - 67,978,285 (+)Ensembl
Rnor_6.0 Ensembl973,378,063 - 73,459,295 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,404,871 - 73,418,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,404,996 - 73,446,962 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092445   ⟹   ENSRNOP00000075849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,303,133 - 75,428,007 (+)Ensembl
mRatBN7.2 Ensembl967,896,967 - 67,978,285 (+)Ensembl
Rnor_6.0 Ensembl973,378,094 - 73,462,972 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092485   ⟹   ENSRNOP00000075883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,288,262 - 75,428,459 (+)Ensembl
mRatBN7.2 Ensembl967,723,371 - 67,979,809 (+)Ensembl
Rnor_6.0 Ensembl973,319,710 - 73,459,579 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092540   ⟹   ENSRNOP00000075766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,373,567 - 75,428,007 (+)Ensembl
mRatBN7.2 Ensembl967,923,934 - 67,978,285 (+)Ensembl
Rnor_6.0 Ensembl973,433,252 - 73,458,471 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092547   ⟹   ENSRNOP00000075888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,418,607 - 73,429,555 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,405,033 - 73,446,795 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092717   ⟹   ENSRNOP00000075908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,334,618 - 73,418,591 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110600   ⟹   ENSRNOP00000089734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,303,133 - 75,428,007 (+)Ensembl
mRatBN7.2 Ensembl967,896,967 - 67,978,285 (+)Ensembl
RefSeq Acc Id: NM_013066   ⟹   NP_037198
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,346,690 - 75,428,015 (+)NCBI
mRatBN7.2967,896,967 - 67,978,295 (+)NCBI
Rnor_6.0973,378,057 - 73,459,381 (+)NCBI
Rnor_5.0973,837,509 - 74,095,431 (-)NCBI
RGSC_v3.4965,174,376 - 65,256,003 (+)RGD
Celera965,377,941 - 65,459,391 (+)RGD
Sequence:
RefSeq Acc Id: XM_008767199   ⟹   XP_008765421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,495 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767200   ⟹   XP_008765422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,187 - 67,981,886 (+)NCBI
Rnor_6.0973,334,494 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767205   ⟹   XP_008765427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,496 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767206   ⟹   XP_008765428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,498 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767207   ⟹   XP_008765429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,501 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767208   ⟹   XP_008765430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,502 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596291   ⟹   XP_017451780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,495 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596293   ⟹   XP_017451782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
mRatBN7.2967,723,422 - 67,981,886 (+)NCBI
Rnor_6.0973,204,753 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596297   ⟹   XP_017451786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,496 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596298   ⟹   XP_017451787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
Rnor_6.0973,334,497 - 73,462,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083075   ⟹   XP_038939003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
mRatBN7.2967,723,434 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083077   ⟹   XP_038939005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083078   ⟹   XP_038939006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083081   ⟹   XP_038939009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083082   ⟹   XP_038939010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083083   ⟹   XP_038939011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083084   ⟹   XP_038939012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083085   ⟹   XP_038939013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_039083086   ⟹   XP_038939014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
mRatBN7.2967,853,351 - 67,981,886 (+)NCBI
RefSeq Acc Id: XM_063266707   ⟹   XP_063122777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266708   ⟹   XP_063122778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266709   ⟹   XP_063122779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266710   ⟹   XP_063122780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266711   ⟹   XP_063122781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266712   ⟹   XP_063122782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266713   ⟹   XP_063122783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266714   ⟹   XP_063122784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,077 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266715   ⟹   XP_063122785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,055 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266716   ⟹   XP_063122786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266717   ⟹   XP_063122787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266718   ⟹   XP_063122788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,072 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266719   ⟹   XP_063122789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266720   ⟹   XP_063122790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,055 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266721   ⟹   XP_063122791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266722   ⟹   XP_063122792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266723   ⟹   XP_063122793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266724   ⟹   XP_063122794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,038 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266725   ⟹   XP_063122795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266726   ⟹   XP_063122796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266727   ⟹   XP_063122797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,076 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266728   ⟹   XP_063122798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266729   ⟹   XP_063122799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,077 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266730   ⟹   XP_063122800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266731   ⟹   XP_063122801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,038 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266732   ⟹   XP_063122802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,077 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266733   ⟹   XP_063122803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266734   ⟹   XP_063122804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,069 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266735   ⟹   XP_063122805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,173,080 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266736   ⟹   XP_063122806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
RefSeq Acc Id: XM_063266737   ⟹   XP_063122807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,302,743 - 75,431,606 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001418678 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418679 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418680 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418681 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418682 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418683 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418684 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418685 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418686 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418691 (Get FASTA)   NCBI Sequence Viewer  
  NP_037198 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765421 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765422 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765427 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765428 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765429 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765430 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451780 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451782 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451786 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939003 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939005 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939006 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939009 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939010 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939011 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939012 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939013 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939014 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122777 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122779 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122780 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122781 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122783 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122785 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122786 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122787 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122788 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122789 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122790 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122791 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122792 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122793 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122794 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122795 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122796 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122797 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122798 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122799 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122800 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122801 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122802 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122803 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122804 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122805 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122806 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122807 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81835 (Get FASTA)   NCBI Sequence Viewer  
  CAA35667 (Get FASTA)   NCBI Sequence Viewer  
  CAA36135 (Get FASTA)   NCBI Sequence Viewer  
  CAA38034 (Get FASTA)   NCBI Sequence Viewer  
  CAA50588 (Get FASTA)   NCBI Sequence Viewer  
  CAA52283 (Get FASTA)   NCBI Sequence Viewer  
  EDL75300 (Get FASTA)   NCBI Sequence Viewer  
  EDL75301 (Get FASTA)   NCBI Sequence Viewer  
  EDL75302 (Get FASTA)   NCBI Sequence Viewer  
  EDL75303 (Get FASTA)   NCBI Sequence Viewer  
  EDL75304 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000031915
  ENSRNOP00000042029
  ENSRNOP00000050877
  ENSRNOP00000075849
  ENSRNOP00000089734
GenBank Protein P15146 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037198   ⟸   NM_013066
- UniProtKB: Q64715 (UniProtKB/TrEMBL),   A6KFC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765429   ⟸   XM_008767207
- Peptide Label: isoform X20
- UniProtKB: Q78DZ1 (UniProtKB/TrEMBL),   E9PTL3 (UniProtKB/TrEMBL),   A0A9K3Y814 (UniProtKB/TrEMBL),   A0A0U1RS04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765430   ⟸   XM_008767208
- Peptide Label: isoform X21
- UniProtKB: A6KFC7 (UniProtKB/TrEMBL),   A0A0U1RS04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765428   ⟸   XM_008767206
- Peptide Label: isoform X13
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765422   ⟸   XM_008767200
- Peptide Label: isoform X2
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008765421   ⟸   XM_008767199
- Peptide Label: isoform X3
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008765427   ⟸   XM_008767205
- Peptide Label: isoform X11
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451782   ⟸   XM_017596293
- Peptide Label: isoform X1
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1LNK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451780   ⟸   XM_017596291
- Peptide Label: isoform X1
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1LNK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451786   ⟸   XM_017596297
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GHK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451787   ⟸   XM_017596298
- Peptide Label: isoform X8
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1MAQ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000050877   ⟸   ENSRNOT00000045766
Ensembl Acc Id: ENSRNOP00000075908   ⟸   ENSRNOT00000092717
Ensembl Acc Id: ENSRNOP00000075888   ⟸   ENSRNOT00000092547
Ensembl Acc Id: ENSRNOP00000075766   ⟸   ENSRNOT00000092540
Ensembl Acc Id: ENSRNOP00000075883   ⟸   ENSRNOT00000092485
Ensembl Acc Id: ENSRNOP00000075849   ⟸   ENSRNOT00000092445
Ensembl Acc Id: ENSRNOP00000042029   ⟸   ENSRNOT00000043627
Ensembl Acc Id: ENSRNOP00000031915   ⟸   ENSRNOT00000037974
RefSeq Acc Id: XP_038939003   ⟸   XM_039083075
- Peptide Label: isoform X1
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1LNK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939006   ⟸   XM_039083078
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GHK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939011   ⟸   XM_039083083
- Peptide Label: isoform X14
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939014   ⟸   XM_039083086
- Peptide Label: isoform X17
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939005   ⟸   XM_039083077
- Peptide Label: isoform X5
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038939009   ⟸   XM_039083081
- Peptide Label: isoform X10
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038939012   ⟸   XM_039083084
- Peptide Label: isoform X15
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939010   ⟸   XM_039083082
- Peptide Label: isoform X12
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038939013   ⟸   XM_039083085
- Peptide Label: isoform X18
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089734   ⟸   ENSRNOT00000110600
RefSeq Acc Id: XP_063122794   ⟸   XM_063266724
- Peptide Label: isoform X11
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122801   ⟸   XM_063266731
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063122785   ⟸   XM_063266715
- Peptide Label: isoform X8
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1MAQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122790   ⟸   XM_063266720
- Peptide Label: isoform X9
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122804   ⟸   XM_063266734
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063122788   ⟸   XM_063266718
- Peptide Label: isoform X10
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122783   ⟸   XM_063266713
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063122777   ⟸   XM_063266707
- Peptide Label: isoform X3
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122787   ⟸   XM_063266717
- Peptide Label: isoform X9
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122778   ⟸   XM_063266708
- Peptide Label: isoform X4
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122781   ⟸   XM_063266711
- Peptide Label: isoform X5
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122796   ⟸   XM_063266726
- Peptide Label: isoform X12
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122779   ⟸   XM_063266709
- Peptide Label: isoform X3
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122793   ⟸   XM_063266723
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063122792   ⟸   XM_063266722
- Peptide Label: isoform X10
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122797   ⟸   XM_063266727
- Peptide Label: isoform X12
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122784   ⟸   XM_063266714
- Peptide Label: isoform X8
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1MAQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122799   ⟸   XM_063266729
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063122802   ⟸   XM_063266732
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063122805   ⟸   XM_063266735
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063122789   ⟸   XM_063266719
- Peptide Label: isoform X9
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122803   ⟸   XM_063266733
- Peptide Label: isoform X19
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122807   ⟸   XM_063266737
- Peptide Label: isoform X22
- UniProtKB: A0A0U1RS04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122780   ⟸   XM_063266710
- Peptide Label: isoform X3
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122786   ⟸   XM_063266716
- Peptide Label: isoform X8
- UniProtKB: P15146 (UniProtKB/Swiss-Prot),   F1MAQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122800   ⟸   XM_063266730
- Peptide Label: isoform X13
- UniProtKB: Q64715 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122795   ⟸   XM_063266725
- Peptide Label: isoform X11
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122806   ⟸   XM_063266736
- Peptide Label: isoform X20
- UniProtKB: A0A0U1RS04 (UniProtKB/TrEMBL),   A0A9K3Y814 (UniProtKB/TrEMBL),   E9PTL3 (UniProtKB/TrEMBL),   Q78DZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122782   ⟸   XM_063266712
- Peptide Label: isoform X5
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122791   ⟸   XM_063266721
- Peptide Label: isoform X10
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122798   ⟸   XM_063266728
- Peptide Label: isoform X12
- UniProtKB: P15146 (UniProtKB/Swiss-Prot)
Protein Domains
MAP2/Tau projection   RII binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P15146-F1-model_v2 AlphaFold P15146 1-1861 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696731
Promoter ID:EPDNEW_R7247
Type:initiation region
Name:Map2_1
Description:microtubule-associated protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0973,334,536 - 73,334,596EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3044 AgrOrtholog
BioCyc Gene G2FUF-27293 BioCyc
Ensembl Genes ENSRNOG00000011841 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000037974 ENTREZGENE
  ENSRNOT00000043627 ENTREZGENE
  ENSRNOT00000045766 ENTREZGENE
  ENSRNOT00000092445 ENTREZGENE
  ENSRNOT00000110600 ENTREZGENE
InterPro MAP2/MAP4/Tau UniProtKB/Swiss-Prot
  MAP2_projctn UniProtKB/Swiss-Prot
  MAP_tubulin-bd_rpt UniProtKB/Swiss-Prot
NCBI Gene 25595 ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEIN UniProtKB/Swiss-Prot
  PTHR11501:SF15 UniProtKB/Swiss-Prot
Pfam MAP2_projctn UniProtKB/Swiss-Prot
  Tubulin-binding UniProtKB/Swiss-Prot
PhenoGen Map2 PhenoGen
PROSITE TAU_MAP_1 UniProtKB/Swiss-Prot
  TAU_MAP_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011841 RatGTEx
UniProt A0A0U1RRQ0_RAT UniProtKB/TrEMBL
  A0A0U1RRX4_RAT UniProtKB/TrEMBL
  A0A0U1RS04 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y814 ENTREZGENE, UniProtKB/TrEMBL
  A6KFC4 ENTREZGENE, UniProtKB/TrEMBL
  A6KFC7 ENTREZGENE, UniProtKB/TrEMBL
  E9PTL3 ENTREZGENE
  F1LNK0 ENTREZGENE, UniProtKB/TrEMBL
  F1MAQ5 ENTREZGENE, UniProtKB/TrEMBL
  MTAP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q64715 ENTREZGENE, UniProtKB/TrEMBL
  Q78DZ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-08-29 Map2  microtubule-associated protein 2  Mtap2  microtubule-associated protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Mtap2  microtubule-associated protein 2  Map2  Microtubule-associated protein 2  Symbol and Name updated 625702 APPROVED
2002-06-10 Map2  Microtubule-associated protein 2      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression enriched in neurons 633248