Lipe (lipase E, hormone sensitive type) - Rat Genome Database

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Gene: Lipe (lipase E, hormone sensitive type) Rattus norvegicus
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Symbol: Lipe
Name: lipase E, hormone sensitive type
RGD ID: 3010
Description: Enables lipase activity and retinyl-palmitate esterase activity. Involved in female pregnancy; response to xenobiotic stimulus; and triglyceride catabolic process. Located in extracellular space. Used to study arteriosclerosis and heart disease. Biomarker of obesity. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 6 and hypertension. Orthologous to human LIPE (lipase E, hormone sensitive type); PARTICIPATES IN insulin signaling pathway; INTERACTS WITH (+)-catechin; (R)-adrenaline; (S)-nicotine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Hormone - sensitive lipase testicular isoform; hormone-sensitive lipase; HSL; lipase E; lipase E, hormone sensitive; lipase hormone sensitive; lipase, hormone sensitive; monoacylglycerol lipase LIPE; REH; retinyl ester hydrolase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Lipem1Mcwi   Lipem2Mcwi  
Genetic Models: FHH-Lipem1Mcwi BN-Lipem2Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,093,433 - 90,112,117 (-)NCBIGRCr8
mRatBN7.2180,965,612 - 80,984,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,965,627 - 80,984,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,357,834 - 86,376,510 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,909,045 - 94,927,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,113,613 - 88,132,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,248,031 - 82,266,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,248,046 - 82,266,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,511,504 - 83,530,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,663,791 - 80,682,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,741,901 - 80,760,591 (-)NCBI
Celera175,407,246 - 75,425,931 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LipeRatarteriosclerosis  ISOLIPE (Homo sapiens)1581867 RGD 
LipeRatarteriosclerosis  IDA 1581868 RGD 
LipeRatheart disease  IMP 2313583associated with Diabetes Mellitus and ExperimentalRGD 
LipeRathypertension  ISOLIPE (Homo sapiens)1625026gestational hypertension and DNA:polymorphism:promoter:-60C>GRGD 
LipeRatHypertriglyceridemia  IDA 2313581 RGD 
LipeRatMetabolic Syndrome  ISOLipe (Mus musculus)329333017mRNA:increased expression:liver (mouse)RGD 
LipeRatobesity  IEP 2313580mRNA:decreased expression:white fatRGD 
LipeRattype 2 diabetes mellitus  ISOLIPE (Homo sapiens)2313584mRNA:decreased expression:subcutaneous adipose tissueRGD 
Object Symbol
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Term
Qualifier
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Reference
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Original Reference(s)
LipeRatCarpenter syndrome 2  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: Carpenter syndrome 2ClinVarPMID:28492532
LipeRatcongenital hypoplastic anemia  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital hypoplastic anemiaClinVarPMID:28492532
LipeRatcraniosynostosis 1  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: TWIST1-related craniosynostosisClinVarPMID:28492532
LipeRatDiamond-Blackfan anemia  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: Aase syndromeClinVarPMID:28492532
LipeRatfamilial partial lipodystrophy type 6  ISOLIPE (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24375490 more ...
LipeRatgenetic disease  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
LipeRatmaple syrup urine disease  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: Maple syrup urine diseaseClinVarPMID:28492532
LipeRatschizophrenia  ISOLIPE (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
Object Symbol
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Original Reference(s)
LipeRatfamilial partial lipodystrophy  ISOLIPE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
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Original Reference(s)
LipeRatfamilial partial lipodystrophy type 6  ISOLIPE (Homo sapiens)7240710 OMIM 

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Object Symbol
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Original Reference(s)
LipeRat(+)-catechin multiple interactionsEXP 6480464Catechin inhibits the reaction [Dietary Fats results in decreased expression of LIPE mRNA]CTDPMID:23365609
LipeRat(25R)-cholest-5-ene-3beta,26-diol multiple interactionsISOLipe (Mus musculus)6480464LIPE protein promotes the reaction [27-hydroxycholesterol results in increased expression of STAR mRNA] and LIPE protein promotes the reaction [27-hydroxycholesterol results in increased expression of STAR protein]CTDPMID:23362264
LipeRat(R)-adrenaline multiple interactionsISOLIPE (Homo sapiens)6480464Theophylline inhibits the reaction [Epinephrine results in increased activity of LIPE protein]CTDPMID:7155675
LipeRat(R)-adrenaline increases expressionISOLipe (Mus musculus)6480464Epinephrine results in increased expression of LIPE mRNACTDPMID:10777495
LipeRat(R)-adrenaline affects localizationEXP 6480464Epinephrine affects the localization of LIPE proteinCTDPMID:11160373
LipeRat(R)-adrenaline increases activityISOLIPE (Homo sapiens)6480464Epinephrine results in increased activity of LIPE proteinCTDPMID:7155675
LipeRat(R)-lipoic acid multiple interactionsISOLipe (Mus musculus)6480464N-(2-(4-bromocinnamylamino)ethyl)-5-isoquinolinesulfonamide inhibits the reaction [Thioctic Acid results in increased phosphorylation of LIPE protein]CTDPMID:22941773
LipeRat(R)-lipoic acid increases phosphorylationISOLipe (Mus musculus)6480464Thioctic Acid results in increased phosphorylation of LIPE proteinCTDPMID:22941773
LipeRat(S)-nicotine decreases expressionEXP 6480464Nicotine results in decreased expression of LIPE mRNACTDPMID:29155039
LipeRat1,2-dimethylhydrazine increases expressionISOLipe (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of LIPE mRNACTDPMID:22206623
LipeRat17beta-estradiol multiple interactionsISOLipe (Mus musculus)6480464[Polyphenols co-treated with Estradiol] results in decreased expression of LIPE mRNACTDPMID:30077407
LipeRat17beta-estradiol multiple interactionsISOLIPE (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of LIPE mRNACTDPMID:30165855
LipeRat17beta-estradiol decreases expressionISOLipe (Mus musculus)6480464Estradiol results in decreased expression of LIPE mRNACTDPMID:30077407
LipeRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOLipe (Mus musculus)6480464[bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Tetrachlorodibenzodioxin co-treated with 2 more ...CTDPMID:30722647
LipeRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOLipe (Mus musculus)64804642 more ...CTDPMID:30294300
LipeRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of LIPE mRNACTDPMID:19490992 and PMID:34747641
LipeRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of LIPE mRNACTDPMID:33387578
LipeRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of LIPE mRNACTDPMID:32109520
LipeRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOLipe (Mus musculus)6480464[bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Tetrachlorodibenzodioxin co-treated with 2 more ...CTDPMID:30722647
LipeRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOLipe (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of LIPE mRNACTDPMID:26290441 and PMID:28238261

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Biological Process
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Original Reference(s)
LipeRatcellular response to cold acts_upstream_of_or_withinISOLipe (Mus musculus)1624291 PMID:30862682RGDPMID:30862682
LipeRatcholesterol metabolic process involved_inIEAUniProtKB-KW:KW-01531600115GO_REF:0000043UniProtGO_REF:0000043
LipeRatcholesterol metabolic process involved_inIEAInterPro:IPR0104681600115GO_REF:0000002InterProGO_REF:0000002
LipeRatdiacylglycerol catabolic process involved_inISSUniProtKB:P543101600115GO_REF:0000024UniProtGO_REF:0000024
LipeRatdiacylglycerol catabolic process involved_inISOLipe (Mus musculus)1624291 PMID:23066022RGDPMID:23066022
LipeRatdiacylglycerol catabolic process acts_upstream_of_or_withinISOLipe (Mus musculus)1624291MGI:2388334 PMID:11717312 and PMID:16804080RGDPMID:11717312 and PMID:16804080
LipeRatether lipid metabolic process involved_inISSUniProtKB:P543101600115GO_REF:0000024UniProtGO_REF:0000024
LipeRatether lipid metabolic process involved_inISOLipe (Mus musculus)1624291 PMID:20625037RGDPMID:20625037
LipeRatfemale pregnancy  IEP 1581870 RGD 
LipeRatlipid catabolic process  TAS 1625027 RGD 
LipeRatlipid catabolic process involved_inISOLipe (Mus musculus)1624291 PMID:15878856RGDPMID:15878856
LipeRatlipid catabolic process involved_inIEAUniProtKB-KW:KW-04421600115GO_REF:0000043UniProtGO_REF:0000043
LipeRatlipid catabolic process involved_inIEAInterPro:IPR0104681600115GO_REF:0000002InterProGO_REF:0000002
LipeRatlipid catabolic process involved_inISSUniProtKB:P543101600115GO_REF:0000024UniProtGO_REF:0000024
LipeRatlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
LipeRatlong-chain fatty acid catabolic process acts_upstream_of_or_withinISOLipe (Mus musculus)1624291 PMID:16804080RGDPMID:16804080
LipeRatresponse to xenobiotic stimulus  IEP 1581869 RGD 
LipeRatresponse to xenobiotic stimulus  IEP 2313581masoprocolRGD 
LipeRatretinol metabolic process involved_inIEAGO:00502531600115GO_REF:0000108GOCGO_REF:0000108
LipeRatretinol metabolic process involved_inIEAGO:00473761600115GO_REF:0000108GOCGO_REF:0000108
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Cellular Component
1 to 20 of 31 rows

  
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Original Reference(s)
LipeRatcaveola located_inIEAUniProtKB-SubCell:SL-00351600115GO_REF:0000044UniProtGO_REF:0000044
LipeRatcaveola located_inISSUniProtKB:Q6NZI28553552PMID:17026959UniProt 
LipeRatcytoplasm located_inISSUniProtKB:Q6NZI28553552PMID:17026959UniProt 
LipeRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
LipeRatcytosol located_inISOLIPE (Homo sapiens) and UniProtKB:Q05469-11624291 RGDGO_REF:0000052
LipeRatcytosol located_inIEAUniProtKB:Q05469 and ensembl:ENSP000002442891600115GO_REF:0000107EnsemblGO_REF:0000107
LipeRatcytosol is_active_inIBAFB:FBgn0034491 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
LipeRatcytosol located_inTAS 1600115Reactome:R-RNO-163398ReactomeReactome:R-RNO-163398
LipeRatcytosol located_inTAS 1600115Reactome:R-RNO-163472ReactomeReactome:R-RNO-163472
LipeRatcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
LipeRatcytosol located_inTAS 1600115Reactome:R-RNO-163597ReactomeReactome:R-RNO-163597
LipeRatcytosol located_inISSUniProtKB:P543101600115GO_REF:0000024UniProtGO_REF:0000024
LipeRatcytosol located_inISOLipe (Mus musculus)1624291 PMID:15550674 more ...RGDPMID:15550674 more ...
LipeRatcytosol located_inTAS 1600115Reactome:R-RNO-163519ReactomeReactome:R-RNO-163519
LipeRatextracellular space  IDA 1625027 RGD 
LipeRatlipid droplet located_inTAS 1600115Reactome:R-RNO-163440ReactomeReactome:R-RNO-163440
LipeRatlipid droplet located_inIEAUniProtKB-KW:KW-05511600115GO_REF:0000043UniProtGO_REF:0000043
LipeRatlipid droplet located_inISSUniProtKB:P543101600115GO_REF:0000024UniProtGO_REF:0000024
LipeRatlipid droplet located_inIEAUniProtKB-SubCell:SL-01541600115GO_REF:0000044UniProtGO_REF:0000044
LipeRatlipid droplet located_inTAS 1600115Reactome:R-RNO-163407ReactomeReactome:R-RNO-163407
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Molecular Function
1 to 20 of 39 rows

  
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Original Reference(s)
LipeRatall-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity enablesIEARHEA:139331600115GO_REF:0000116RHEAGO_REF:0000116
LipeRatdiacylglycerol lipase activity enablesISOLipe (Mus musculus)1624291 PMID:23066022RGDPMID:23066022
LipeRatdiacylglycerol lipase activity enablesIEARHEA:327311600115GO_REF:0000116RHEAGO_REF:0000116
LipeRatdiacylglycerol lipase activity enablesIEAUniProtKB:Q05469 and ensembl:ENSP000002442891600115GO_REF:0000107EnsemblGO_REF:0000107
LipeRatdiacylglycerol lipase activity enablesISOLIPE (Homo sapiens)1624291 PMID:19800417 and PMID:8812477RGDPMID:19800417 and PMID:8812477
LipeRatdiacylglycerol lipase activity enablesIDA 30309921PMID:6643478UniProt 
LipeRatdiacylglycerol lipase activity enablesISSUniProtKB:P543101600115GO_REF:0000024UniProtGO_REF:0000024
LipeRathydrolase activity enablesIEAInterPro:IPR002168 and InterPro:IPR0130941600115GO_REF:0000002InterProGO_REF:0000002
LipeRathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
LipeRathydrolase activity, acting on ester bonds  IDA 1581871 RGD 
LipeRatlipase activity enablesIEAInterPro:IPR0104681600115GO_REF:0000002InterProGO_REF:0000002
LipeRatmonoacylglycerol lipase activity  IDA 1581872 RGD 
LipeRatmonoacylglycerol lipase activity enablesISOLipe (Mus musculus)1624291 PMID:21454566RGDPMID:21454566
LipeRatmonoacylglycerol lipase activity enablesIEAEC:3.1.1.231600115GO_REF:0000003UniProtGO_REF:0000003
LipeRatmonoacylglycerol lipase activity enablesIEARHEA:152451600115GO_REF:0000116RHEAGO_REF:0000116
LipeRatprotein binding  IPIStar (Rattus norvegicus)1600085 RGD 
LipeRatprotein binding enablesISOLIPE (Homo sapiens)1624291UniProtKB:Q3SY00 more ...RGDPMID:17026959 and PMID:32296183
LipeRatprotein binding enablesISOLipe (Mus musculus)1624291UniProtKB:Q8BVZ1 and PMID:19717842RGDPMID:19717842
LipeRatprotein binding enablesIPIUniProtKB:M0R7Z98553664PMID:24303154UniProt 
LipeRatprotein binding  IPIFabp4 (Rattus norvegicus)68775 RGD 
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Imported Annotations - KEGG (archival)

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Original Reference(s)
LipeRatinsulin signaling pathway   IEA 6907045 KEGGrno:04910

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#
Reference Title
Reference Citation
1. Association and insulin regulated translocation of hormone-sensitive lipase with PTRF. Aboulaich N, etal., Biochem Biophys Res Commun. 2006 Nov 24;350(3):657-61. Epub 2006 Sep 28.
2. Vectorial proteomics reveal targeting, phosphorylation and specific fragmentation of polymerase I and transcript release factor (PTRF) at the surface of caveolae in human adipocytes. Aboulaich N, etal., Biochem J. 2004 Oct 15;383(Pt 2):237-48.
3. The combination of ApoCIII, hepatic lipase and hormono sensitive lipase gene polymorphisms suggests an association with susceptibility to gestational hypertension. Bernard N, etal., J Hum Genet. 2007;52(3):244-54. Epub 2007 Feb 15.
4. Paradoxical effect on atherosclerosis of hormone-sensitive lipase overexpression in macrophages. Escary JL, etal., J Lipid Res. 1999 Mar;40(3):397-404.
5. PPARgamma agonism increases rat adipose tissue lipolysis, expression of glyceride lipases, and the response of lipolysis to hormonal control. Festuccia WT, etal., Diabetologia. 2006 Oct;49(10):2427-36. Epub 2006 Aug 14.
6. Positional specificity of hormone-sensitive lipase from rat adipose tissue. Fredrikson G and Belfrage P, J Biol Chem. 1983 Dec 10;258(23):14253-6.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. The cytoskeleton in 'couch potato-ism': Insights from a murine model of impaired actin dynamics. Gertz K, etal., Exp Neurol. 2018 Aug;306:34-44. doi: 10.1016/j.expneurol.2018.04.004. Epub 2018 Apr 21.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. Low level expression of hormone-sensitive lipase in arterial macrophage-derived foam cells: potential explanation for low rates of cholesteryl ester hydrolysis. Harte RA, etal., Atherosclerosis. 2000 Apr;149(2):343-50.
11. Nucleotide sequence of rat adipose hormone sensitive lipase cDNA. Holm C, etal., Nucleic Acids Res 1988 Oct 25;16(20):9879.
12. Molecular cloning, genomic organization, and expression of a testicular isoform of hormone-sensitive lipase. Holst LS, etal., Genomics 1996 Aug 1;35(3):441-7.
13. Cloning and functional characterization of PTRF, a novel protein which induces dissociation of paused ternary transcription complexes. Jansa P, etal., EMBO J. 1998 May 15;17(10):2855-64.
14. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
15. [Gene expression of hormone sensitive lipase and lipoprotein lipase in obesity-prone and obesity-resistant rats induced by high-fat diet] Ma W, etal., Wei Sheng Yan Jiu. 2007 May;36(3):320-2.
16. Skeletal muscle PLIN3 and PLIN5 are serine phosphorylated at rest and following lipolysis during adrenergic or contractile stimulation. Macpherson RE, etal., Physiol Rep. 2013 Sep;1(4):e00084. doi: 10.1002/phy2.84. Epub 2013 Sep 17.
17. Expression, activity, and localization of hormone-sensitive lipase in rat mammary gland during pregnancy and lactation. Martin-Hidalgo A, etal., J Lipid Res. 2005 Apr;46(4):658-68. Epub 2005 Jan 16.
18. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
19. Analysis of lipolysis in adipocytes using a fluorescent fatty acid derivative. Muller G, etal., Biochimie. 2003 Dec;85(12):1245-56.
20. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
1 to 20 of 35 rows
PMID:10671541   PMID:11717312   PMID:12477932   PMID:12882923   PMID:14576146   PMID:15033481   PMID:15878856   PMID:15887043   PMID:16804080   PMID:16818490   PMID:17074755   PMID:18824635  
PMID:19246492   PMID:19664063   PMID:20708600   PMID:25448749   PMID:26141235   PMID:31150775  



Lipe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,093,433 - 90,112,117 (-)NCBIGRCr8
mRatBN7.2180,965,612 - 80,984,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,965,627 - 80,984,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,357,834 - 86,376,510 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,909,045 - 94,927,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,113,613 - 88,132,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,248,031 - 82,266,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,248,046 - 82,266,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,511,504 - 83,530,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,663,791 - 80,682,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,741,901 - 80,760,591 (-)NCBI
Celera175,407,246 - 75,425,931 (-)NCBICelera
Cytogenetic Map1q21NCBI
LIPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381942,401,514 - 42,427,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1942,401,497 - 42,427,388 (-)EnsemblGRCh38hg38GRCh38
GRCh371942,905,666 - 42,931,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,597,506 - 47,623,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 341947,597,505 - 47,623,418NCBI
Celera1939,706,455 - 39,732,367 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1939,335,797 - 39,361,703 (-)NCBIHuRef
CHM1_11942,907,316 - 42,933,231 (-)NCBICHM1_1
T2T-CHM13v2.01945,220,900 - 45,246,776 (-)NCBIT2T-CHM13v2.0
Lipe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,078,952 - 25,097,911 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,078,952 - 25,098,135 (-)EnsemblGRCm39 Ensembl
GRCm38725,379,527 - 25,398,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,379,527 - 25,398,710 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,164,546 - 26,181,006 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,088,287 - 25,104,747 (-)NCBIMGSCv36mm8
Celera719,994,853 - 20,011,313 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.78NCBI
Lipe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555514,410 - 530,759 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555511,085 - 531,165 (+)NCBIChiLan1.0ChiLan1.0
LIPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22048,506,457 - 48,534,733 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11950,375,028 - 50,400,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01939,289,162 - 39,315,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,881,292 - 47,907,066 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,881,292 - 47,907,066 (-)Ensemblpanpan1.1panPan2
LIPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,987,862 - 112,006,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,988,029 - 112,006,461 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,412,499 - 111,431,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,598,798 - 112,617,839 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,607,340 - 112,617,499 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,153,322 - 112,171,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,788,548 - 111,807,575 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,715,381 - 112,734,429 (+)NCBIUU_Cfam_GSD_1.0
Lipe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,772,658 - 15,792,162 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706128,133 - 141,276 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706122,939 - 139,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,540,708 - 49,560,125 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,543,671 - 49,560,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,443,742 - 45,454,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q12NCBI
LIPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,604,822 - 36,630,648 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,605,126 - 36,630,376 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,849,833 - 14,875,994 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lipe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907363,572 - 379,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907360,462 - 379,266 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Lipe
74 total Variants

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:58
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000027910
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat

1 to 10 of 45 rows
D1Rat339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,968,042 - 80,968,185 (+)MAPPERmRatBN7.2
Rnor_6.0182,250,462 - 82,250,604NCBIRnor6.0
Rnor_5.0183,513,935 - 83,514,077UniSTSRnor5.0
RGSC_v3.4180,666,206 - 80,666,349RGDRGSC3.4
RGSC_v3.4180,666,207 - 80,666,349UniSTSRGSC3.4
RGSC_v3.1180,744,317 - 80,744,460RGD
Celera175,409,662 - 75,409,804UniSTS
SHRSP x BN Map142.2999RGD
SHRSP x BN Map142.2999UniSTS
Cytogenetic Map1q21UniSTS
D1Bda5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,965,649 - 80,965,878 (+)MAPPERmRatBN7.2
Rnor_6.0182,248,069 - 82,248,297NCBIRnor6.0
Rnor_5.0183,511,542 - 83,511,770UniSTSRnor5.0
RGSC_v3.4180,663,814 - 80,664,042UniSTSRGSC3.4
Celera175,407,269 - 75,407,497UniSTS
Cytogenetic Map1q21UniSTS
RH131319  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,965,690 - 80,965,871 (+)MAPPERmRatBN7.2
Rnor_6.0182,248,110 - 82,248,290NCBIRnor6.0
Rnor_5.0183,511,583 - 83,511,763UniSTSRnor5.0
RGSC_v3.4180,663,855 - 80,664,035UniSTSRGSC3.4
Celera175,407,310 - 75,407,490UniSTS
RH 3.4 Map1841.5UniSTS
Cytogenetic Map1q21UniSTS
RH94620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,965,645 - 80,965,801 (+)MAPPERmRatBN7.2
Rnor_6.0182,248,065 - 82,248,220NCBIRnor6.0
Rnor_5.0183,511,538 - 83,511,693UniSTSRnor5.0
RGSC_v3.4180,663,810 - 80,663,965UniSTSRGSC3.4
Celera175,407,265 - 75,407,420UniSTS
Cytogenetic Map1q21UniSTS
BG381659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,985,084 - 80,985,325 (+)MAPPERmRatBN7.2
Rnor_6.0182,267,502 - 82,267,742NCBIRnor6.0
Rnor_5.0183,530,975 - 83,531,215UniSTSRnor5.0
RGSC_v3.4180,683,255 - 80,683,495UniSTSRGSC3.4
Celera175,426,706 - 75,426,946UniSTS
RH 3.4 Map1824.5UniSTS
Cytogenetic Map1q21UniSTS


This gene Lipe is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000027910   ⟹   ENSRNOP00000027911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,965,627 - 80,984,310 (-)Ensembl
Rnor_6.0 Ensembl182,248,046 - 82,266,727 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099694   ⟹   ENSRNOP00000096661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,965,627 - 80,981,553 (-)Ensembl
RefSeq Acc Id: NM_012859   ⟹   NP_036991
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,093,433 - 90,112,117 (-)NCBI
mRatBN7.2180,965,627 - 80,984,310 (-)NCBI
Rnor_6.0182,248,046 - 82,266,727 (-)NCBI
Rnor_5.0183,511,504 - 83,530,200 (-)NCBI
RGSC_v3.4180,663,791 - 80,682,480 (-)RGD
Celera175,407,246 - 75,425,931 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228391   ⟹   XP_006228453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,093,692 - 90,109,341 (-)NCBI
mRatBN7.2180,965,612 - 80,981,826 (-)NCBI
Rnor_6.0182,248,031 - 82,264,021 (-)NCBI
Rnor_5.0183,511,504 - 83,530,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006228393   ⟹   XP_006228455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,093,692 - 90,102,989 (-)NCBI
mRatBN7.2180,965,612 - 80,975,296 (-)NCBI
Rnor_6.0182,248,031 - 82,257,619 (-)NCBI
Rnor_5.0183,511,504 - 83,530,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006228394   ⟹   XP_006228456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,093,692 - 90,104,042 (-)NCBI
mRatBN7.2180,965,612 - 80,976,529 (-)NCBI
Rnor_6.0182,248,031 - 82,260,279 (-)NCBI
Rnor_5.0183,511,504 - 83,530,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101579   ⟹   XP_038957507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,098,793 - 90,111,924 (-)NCBI
mRatBN7.2180,970,991 - 80,984,313 (-)NCBI
RefSeq Acc Id: XM_063281687   ⟹   XP_063137757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,093,692 - 90,111,183 (-)NCBI
RefSeq Acc Id: NP_036991   ⟸   NM_012859
- UniProtKB: Q6LCQ2 (UniProtKB/Swiss-Prot),   P15304 (UniProtKB/Swiss-Prot),   A6J957 (UniProtKB/TrEMBL),   G3V8R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228453   ⟸   XM_006228391
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GLP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228456   ⟸   XM_006228394
- Peptide Label: isoform X4
- UniProtKB: A6J958 (UniProtKB/TrEMBL),   A0A8I6GLP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228455   ⟸   XM_006228393
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GLP7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000027911   ⟸   ENSRNOT00000027910
Name Modeler Protein Id AA Range Protein Structure
AF-P15304-F1-model_v2 AlphaFold P15304 1-1068 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689815
Promoter ID:EPDNEW_R340
Type:multiple initiation site
Name:Lipe_1
Description:lipase E, hormone sensitive type
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0182,266,726 - 82,266,786EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60386 BioCyc
BioCyc Pathway LIPAS-PWY [triacylglycerol degradation] BioCyc
  PWY-7420 [monoacylglycerol metabolism (yeast)] BioCyc
  PWY-8052 [2-arachidonoylglycerol biosynthesis] BioCyc
BioCyc Pathway Image LIPAS-PWY BioCyc
  PWY-7420 BioCyc
  PWY-8052 BioCyc
Ensembl Genes ENSRNOG00000020546 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000027910 ENTREZGENE
  ENSRNOT00000099694 ENTREZGENE
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot
InterPro AB_hydrolase UniProtKB/Swiss-Prot
  AB_hydrolase_3 UniProtKB/Swiss-Prot
  HSL_N UniProtKB/Swiss-Prot
  Lipase_GDXG_HIS_AS UniProtKB/Swiss-Prot
  Lipase_GDXG_put_SER_AS UniProtKB/Swiss-Prot
KEGG Report rno:25330 UniProtKB/Swiss-Prot
NCBI Gene 25330 ENTREZGENE
PANTHER HORMONE-SENSITIVE LIPASE UniProtKB/Swiss-Prot
  TRIACYLGLYCEROL LIPASE UniProtKB/Swiss-Prot
Pfam Abhydrolase_3 UniProtKB/Swiss-Prot
  HSL_N UniProtKB/Swiss-Prot
PhenoGen Lipe PhenoGen
PROSITE LIPASE_GDXG_HIS UniProtKB/Swiss-Prot
  LIPASE_GDXG_SER UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020546 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot
TIGR TC233459
UniProt A0A8I6GLP7 ENTREZGENE, UniProtKB/TrEMBL
  A6J957 ENTREZGENE, UniProtKB/TrEMBL
  A6J958 ENTREZGENE, UniProtKB/TrEMBL
  G3V8R5 ENTREZGENE, UniProtKB/TrEMBL
  LIPS_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6AYV9 ENTREZGENE, UniProtKB/TrEMBL
  Q6LCQ2 ENTREZGENE
UniProt Secondary Q6LCQ2 UniProtKB/Swiss-Prot
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Lipe  lipase E, hormone sensitive type  Lipe  lipase E, hormone sensitive  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-03 Lipe  lipase E, hormone sensitive  Lipe  lipase, hormone sensitive  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2001-07-23 Lipe  Hormone - sensitive lipase, testicular isoform      Name withdrawn 67952 WITHDRAWN
2001-07-23 Lipe  lipase, hormone sensitive      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED

Note Type Note Reference
gene_expression expressed in testis in the spermatids and spermatozoa 729199