Foxg1 (forkhead box G1) - Rat Genome Database

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Gene: Foxg1 (forkhead box G1) Rattus norvegicus
Analyze
Symbol: Foxg1
Name: forkhead box G1
RGD ID: 2619
Description: Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including neuron differentiation; positive regulation of neuroblast proliferation; and regulation of neuron differentiation. Predicted to be active in nucleus. Orthologous to human FOXG1 (forkhead box G1); INTERACTS WITH bisphenol A; Cuprizon; dexamethasone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BF-1; BF1; BF1A; brain factor 1; Fkhl1; Fkhr; forkhead box O1; forkhead box protein G1; Forkhead-like transcription factor BF-1; forkhead-related protein FKHL1; Foxo1; RATBF1A; transcription factor BF-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8672,401,582 - 72,404,392 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl672,394,239 - 72,427,392 (+)EnsemblGRCr8
mRatBN7.2666,674,797 - 66,677,611 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl666,666,587 - 66,678,607 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx667,104,230 - 67,107,044 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0667,419,441 - 67,422,255 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0666,835,971 - 66,838,784 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0669,971,227 - 69,974,037 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl669,971,227 - 69,974,037 (+)Ensemblrn6Rnor6.0
Rnor_5.0679,532,855 - 79,535,665 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4669,217,672 - 69,220,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera665,602,643 - 65,605,453 (+)NCBICelera
RGSC_v3.1669,220,797 - 69,223,608 (+)NCBI
Cytogenetic Map6q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-amphetamine  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acetaldehyde  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amosite asbestos  (ISO)
arotinoid acid  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlorpyrifos  (ISO)
cortisol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyproconazole  (ISO)
dexamethasone  (EXP)
diallyl trisulfide  (ISO)
dimethylarsinic acid  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
erlotinib hydrochloride  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
flusilazole  (ISO)
gentamycin  (EXP)
hexaconazole  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-Vinyl-2-pyrrolidone  (EXP)
nitrogen dioxide  (ISO)
PD 0325901  (ISO)
phenylmercury acetate  (ISO)
poly(ethylene)  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
retinyl acetate  (ISO)
Rutecarpine  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
testosterone  (EXP)
Theaflavin 3,3'-digallate  (ISO)
titanium dioxide  (ISO)
torin 1  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. FoxG1, a member of the forkhead family, is a corepressor of the androgen receptor. Obendorf M, etal., J Steroid Biochem Mol Biol. 2007 May;104(3-5):195-207. Epub 2007 Mar 23.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Expression of FKHR, FKHRL1, and AFX genes in the rodent ovary: evidence for regulation by IGF-I, estrogen, and the gonadotropins. Richards JS, etal., Mol Endocrinol 2002 Mar;16(3):580-99.
13. Common increase of GATA-3 level in PC-12 cells by three teratogens causing autism spectrum disorders. Rout UK and Clausen P, Neurosci Res. 2009 Jun;64(2):162-9. Epub 2009 Mar 6.
14. Telencephalon-restricted expression of BF-1, a new member of the HNF-3/fork head gene family, in the developing rat brain. Tao W and Lai E, Neuron 1992 May;8(5):957-66.
15. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
16. SH2-B is a positive regulator of nerve growth factor-mediated activation of the Akt/Forkhead pathway in PC12 cells. Wang X, etal., J Biol Chem 2004 Jan 2;279(1):133-41. Epub 2003 Oct 16.
Additional References at PubMed
PMID:7605629   PMID:12151532   PMID:12657635   PMID:14566948   PMID:14704420   PMID:15240555   PMID:15893304   PMID:16314515   PMID:16680166   PMID:16691564   PMID:17916612   PMID:18184563  
PMID:18842901   PMID:22354967   PMID:22516202   PMID:22726835   PMID:23332764   PMID:31731101  


Genomics

Comparative Map Data
Foxg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8672,401,582 - 72,404,392 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl672,394,239 - 72,427,392 (+)EnsemblGRCr8
mRatBN7.2666,674,797 - 66,677,611 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl666,666,587 - 66,678,607 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx667,104,230 - 67,107,044 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0667,419,441 - 67,422,255 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0666,835,971 - 66,838,784 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0669,971,227 - 69,974,037 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl669,971,227 - 69,974,037 (+)Ensemblrn6Rnor6.0
Rnor_5.0679,532,855 - 79,535,665 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4669,217,672 - 69,220,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera665,602,643 - 65,605,453 (+)NCBICelera
RGSC_v3.1669,220,797 - 69,223,608 (+)NCBI
Cytogenetic Map6q22NCBI
FOXG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381428,766,787 - 28,770,277 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1428,764,329 - 28,770,277 (+)Ensemblhg38GRCh38
GRCh371429,235,993 - 29,239,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361428,306,038 - 28,308,622 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341428,306,037 - 28,308,621NCBI
Celera149,101,781 - 9,104,365 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef149,354,165 - 9,356,212 (+)NCBIHuRef
CHM1_11429,235,018 - 29,238,135 (+)NCBICHM1_1
T2T-CHM13v2.01422,964,720 - 22,968,210 (+)NCBIT2T-CHM13v2.0
Foxg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391249,429,666 - 49,433,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1249,429,443 - 49,433,644 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381249,382,883 - 49,386,867 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1249,382,660 - 49,386,861 (+)Ensemblmm10GRCm38
MGSCv371250,483,870 - 50,487,854 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361250,259,134 - 50,262,983 (+)NCBIMGSCv36mm8
Celera1250,702,987 - 50,706,779 (+)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1221.78NCBI
Foxg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540931,672,960 - 31,674,970 (-)NCBIChiLan1.0ChiLan1.0
LOC100990531
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21530,104,661 - 30,111,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11429,321,329 - 29,327,590 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0149,545,147 - 9,572,309 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11427,702,232 - 27,723,324 (+)NCBIPanPan1.1PanPan1.1panPan2
FOXG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.188,276,300 - 8,279,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha88,206,024 - 8,208,494 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.088,378,885 - 8,381,362 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl88,378,921 - 8,380,415 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.188,061,554 - 8,064,024 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.088,140,895 - 8,143,364 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.088,414,501 - 8,416,964 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Foxg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864040,232,521 - 40,255,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364943,736,120 - 3,739,498 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364943,738,419 - 3,740,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl770,658,685 - 70,660,145 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1770,656,603 - 70,660,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FOXG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl245,650,448 - 5,651,920 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Foxg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248203,543,687 - 3,545,147 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248203,542,767 - 3,547,180 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Foxg1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1764,222,170 - 64,225,710 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Foxg1
10 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:665
Count of miRNA genes:280
Interacting mature miRNAs:369
Transcripts:ENSRNOT00000075349
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
D6Arb13   No map positions available.
Foxg1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2666,676,486 - 66,677,490 (+)MAPPERmRatBN7.2
Rnor_6.0669,972,913 - 69,973,916NCBIRnor6.0
Rnor_5.0679,534,541 - 79,535,544UniSTSRnor5.0
RGSC_v3.4669,219,358 - 69,220,361UniSTSRGSC3.4
Celera665,604,329 - 65,605,332UniSTS
Cytogenetic Map6q22UniSTS
UniSTS:225243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2666,676,829 - 66,676,998 (+)MAPPERmRatBN7.2
Rnor_6.0669,973,256 - 69,973,424NCBIRnor6.0
Rnor_5.0679,534,884 - 79,535,052UniSTSRnor5.0
RGSC_v3.4669,219,701 - 69,219,869UniSTSRGSC3.4
Celera665,604,672 - 65,604,840UniSTS
Cytogenetic Map6q22UniSTS
Foxg1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2666,676,850 - 66,677,305 (+)MAPPERmRatBN7.2
Rnor_6.0669,973,277 - 69,973,731NCBIRnor6.0
Rnor_5.0679,534,905 - 79,535,359UniSTSRnor5.0
RGSC_v3.4669,219,722 - 69,220,176UniSTSRGSC3.4
Celera665,604,693 - 65,605,147UniSTS
Cytogenetic Map6q22UniSTS
Foxg1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2666,676,263 - 66,676,659 (+)MAPPERmRatBN7.2
Rnor_6.0669,972,690 - 69,973,085NCBIRnor6.0
Rnor_5.0679,534,318 - 79,534,713UniSTSRnor5.0
RGSC_v3.4669,219,135 - 69,219,530UniSTSRGSC3.4
Celera665,604,106 - 65,604,501UniSTS
Cytogenetic Map6q22UniSTS
Foxg1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0669,970,151 - 69,971,510NCBIRnor6.0
Rnor_5.0679,531,779 - 79,533,138UniSTSRnor5.0
Celera665,601,865 - 65,602,926UniSTS
Cytogenetic Map6q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 5 34 140 60 58 29 31 29 6 156 84 121 31 59 29 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000075349   ⟹   ENSRNOP00000067118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,394,949 - 72,405,093 (+)Ensembl
mRatBN7.2 Ensembl666,668,612 - 66,678,607 (+)Ensembl
Rnor_6.0 Ensembl669,971,227 - 69,974,037 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107556   ⟹   ENSRNOP00000082177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,395,163 - 72,427,392 (+)Ensembl
mRatBN7.2 Ensembl666,667,203 - 66,678,607 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116180   ⟹   ENSRNOP00000077714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,394,630 - 72,425,656 (+)Ensembl
mRatBN7.2 Ensembl666,666,587 - 66,678,607 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000128424   ⟹   ENSRNOP00000104921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,395,188 - 72,427,392 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000135544   ⟹   ENSRNOP00000104769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,395,310 - 72,427,392 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000143349   ⟹   ENSRNOP00000101671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,402,024 - 72,405,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148174   ⟹   ENSRNOP00000108349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,395,265 - 72,427,392 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151038   ⟹   ENSRNOP00000099687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,394,239 - 72,425,656 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000153471   ⟹   ENSRNOP00000099493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,395,187 - 72,427,392 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166808   ⟹   ENSRNOP00000111879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl672,395,163 - 72,427,392 (+)Ensembl
RefSeq Acc Id: NM_012560   ⟹   NP_036692
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8672,401,582 - 72,404,392 (+)NCBI
mRatBN7.2666,674,797 - 66,677,611 (+)NCBI
Rnor_6.0669,971,227 - 69,974,037 (+)NCBI
Rnor_5.0679,532,855 - 79,535,665 (+)NCBI
RGSC_v3.4669,217,672 - 69,220,482 (+)RGD
Celera665,602,643 - 65,605,453 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_036692 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40812 (Get FASTA)   NCBI Sequence Viewer  
  EDM03366 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067118
  ENSRNOP00000067118.1
  ENSRNOP00000077714.1
  ENSRNOP00000082177.1
GenBank Protein Q00939 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036692   ⟸   NM_012560
- UniProtKB: Q00939 (UniProtKB/Swiss-Prot),   A6HBG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067118   ⟸   ENSRNOT00000075349
Ensembl Acc Id: ENSRNOP00000077714   ⟸   ENSRNOT00000116180
Ensembl Acc Id: ENSRNOP00000082177   ⟸   ENSRNOT00000107556
Ensembl Acc Id: ENSRNOP00000099493   ⟸   ENSRNOT00000153471
Ensembl Acc Id: ENSRNOP00000108349   ⟸   ENSRNOT00000148174
Ensembl Acc Id: ENSRNOP00000104769   ⟸   ENSRNOT00000135544
Ensembl Acc Id: ENSRNOP00000111879   ⟸   ENSRNOT00000166808
Ensembl Acc Id: ENSRNOP00000099687   ⟸   ENSRNOT00000151038
Ensembl Acc Id: ENSRNOP00000101671   ⟸   ENSRNOT00000143349
Ensembl Acc Id: ENSRNOP00000104921   ⟸   ENSRNOT00000128424
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q00939-F1-model_v2 AlphaFold Q00939 1-480 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694580
Promoter ID:EPDNEW_R5105
Type:single initiation site
Name:Foxg1_1
Description:forkhead box G1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0669,971,157 - 69,971,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2619 AgrOrtholog
BioCyc Gene G2FUF-37626 BioCyc
Ensembl Genes ENSRNOG00000047891 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000075349 ENTREZGENE
  ENSRNOT00000075349.2 UniProtKB/Swiss-Prot
  ENSRNOT00000107556.1 UniProtKB/Swiss-Prot
  ENSRNOT00000116180.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
InterPro Fork_head_dom UniProtKB/Swiss-Prot
  FOXG1 UniProtKB/Swiss-Prot
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:24370 UniProtKB/Swiss-Prot
NCBI Gene 24370 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN G1 UniProtKB/Swiss-Prot
  FORKHEAD BOX PROTEIN G1 UniProtKB/Swiss-Prot
Pfam Forkhead UniProtKB/Swiss-Prot
PhenoGen Foxg1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot
  FORK_HEAD_2 UniProtKB/Swiss-Prot
  FORK_HEAD_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000047891 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/Swiss-Prot
  SSF46785 UniProtKB/Swiss-Prot
TIGR TC226558
UniProt A0ABK0LFM4_RAT UniProtKB/TrEMBL
  A6HBG0 ENTREZGENE, UniProtKB/TrEMBL
  FOXG1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-12-14 Foxg1  forkhead box G1  Foxo1  forkhead box O1  Symbol and Name updated 1299863 APPROVED
2003-03-04 Foxo1  CCR4 carbon catabolite repression 4-like (S. cerevisiae)  Foxg1  forkhead box O1  Symbol updated to reflect Human and Mouse nomenclature 61478 PROVISIONAL
2002-11-06 Foxg1  forkhead box O1  Fkhr  Forkhead-like transcription factor BF-1  Symbol and Name updated 625702 APPROVED
2002-06-10 Fkhr  Forkhead-like transcription factor BF-1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in the granulosa cells of growing follicles 632665
gene_process may be responsible for proliferation of granulosa cells and their phosphorylation by FSH 632665