FOXG1 (forkhead box G1) - Rat Genome Database

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Gene: FOXG1 (forkhead box G1) Canis lupus familiaris
Analyze
Symbol: FOXG1
Name: forkhead box G1
RGD ID: 12162460
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); sequence-specific DNA binding (inferred); INVOLVED IN axon midline choice point recognition (ortholog); cell morphogenesis involved in neuron differentiation (ortholog); central nervous system neuron development (ortholog); ASSOCIATED WITH acrocallosal syndrome (ortholog); autism spectrum disorder (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: forkhead box protein G1; forkhead box protein G1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.188,276,300 - 8,279,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha88,206,024 - 8,208,494 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.088,378,885 - 8,381,362 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.188,061,554 - 8,064,024 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.088,140,895 - 8,143,364 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.088,414,501 - 8,416,964 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FOXG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.188,276,300 - 8,279,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha88,206,024 - 8,208,494 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.088,378,885 - 8,381,362 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.188,061,554 - 8,064,024 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.088,140,895 - 8,143,364 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.088,414,501 - 8,416,964 (+)NCBIUU_Cfam_GSD_1.0
FOXG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381428,766,787 - 28,770,277 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1428,764,329 - 28,770,277 (+)EnsemblGRCh38hg38GRCh38
GRCh371429,235,993 - 29,239,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361428,306,038 - 28,308,622 (+)NCBINCBI36Build 36hg18NCBI36
Build 341428,306,037 - 28,308,621NCBI
Celera149,101,781 - 9,104,365 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef149,354,165 - 9,356,212 (+)NCBIHuRef
CHM1_11429,235,018 - 29,238,135 (+)NCBICHM1_1
T2T-CHM13v2.01422,964,720 - 22,968,210 (+)NCBIT2T-CHM13v2.0
Foxg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391249,429,666 - 49,433,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1249,429,443 - 49,433,644 (+)EnsemblGRCm39 Ensembl
GRCm381249,382,883 - 49,386,867 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1249,382,660 - 49,386,861 (+)EnsemblGRCm38mm10GRCm38
MGSCv371250,483,870 - 50,487,854 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361250,259,134 - 50,262,983 (+)NCBIMGSCv36mm8
Celera1250,702,987 - 50,706,779 (+)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1221.78NCBI
Foxg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8672,401,582 - 72,404,392 (+)NCBIGRCr8
mRatBN7.2666,674,797 - 66,677,611 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl666,666,587 - 66,678,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx667,104,230 - 67,107,044 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0667,419,441 - 67,422,255 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0666,835,971 - 66,838,784 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0669,971,227 - 69,974,037 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl669,971,227 - 69,974,037 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0679,532,855 - 79,535,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4669,217,672 - 69,220,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1669,220,797 - 69,223,608 (+)NCBI
Celera665,602,643 - 65,605,453 (+)NCBICelera
Cytogenetic Map6q22NCBI
Foxg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540931,672,960 - 31,674,970 (-)NCBIChiLan1.0ChiLan1.0
LOC100990531
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21530,104,661 - 30,111,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11429,321,329 - 29,327,590 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0149,545,147 - 9,572,309 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11427,702,232 - 27,723,324 (+)NCBIpanpan1.1PanPan1.1panPan2
Foxg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864040,232,521 - 40,255,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364943,736,120 - 3,739,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364943,738,419 - 3,740,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl770,658,685 - 70,660,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1770,656,603 - 70,660,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Foxg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248203,543,687 - 3,545,147 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248203,542,767 - 3,547,180 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FOXG1
35 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038482936   ⟹   XP_038338864
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.188,061,554 - 8,064,024 (+)NCBI
RefSeq Acc Id: XM_038544378   ⟹   XP_038400306
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.088,414,501 - 8,416,964 (+)NCBI
RefSeq Acc Id: XM_038584599   ⟹   XP_038440527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha88,206,024 - 8,208,494 (+)NCBI
RefSeq Acc Id: XM_038608495   ⟹   XP_038464423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.088,140,895 - 8,143,364 (+)NCBI
RefSeq Acc Id: XM_038673305   ⟹   XP_038529233
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.088,378,885 - 8,381,362 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038338864   ⟸   XM_038482936
RefSeq Acc Id: XP_038464423   ⟸   XM_038608495
RefSeq Acc Id: XP_038529233   ⟸   XM_038673305
- UniProtKB: A0A8I3N0G9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440527   ⟸   XM_038584599
- UniProtKB: A0A8C0N3H8 (UniProtKB/TrEMBL),   A0A8C0LIA5 (UniProtKB/TrEMBL),   A0A8P0PIQ5 (UniProtKB/TrEMBL),   A0A8I3N0G9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400306   ⟸   XM_038544378
- UniProtKB: A0A8C0LIA5 (UniProtKB/TrEMBL),   A0A8C0N3H8 (UniProtKB/TrEMBL),   A0A8I3N0G9 (UniProtKB/TrEMBL),   A0A8P0PIQ5 (UniProtKB/TrEMBL)
Protein Domains
Fork-head


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000054197 UniProtKB/TrEMBL
  ENSCAFG00030011555 UniProtKB/TrEMBL
  ENSCAFG00040009111 UniProtKB/TrEMBL
  ENSCAFG00845009198 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000104165.1 UniProtKB/TrEMBL
  ENSCAFT00030021338.1 UniProtKB/TrEMBL
  ENSCAFT00040016877.1 UniProtKB/TrEMBL
  ENSCAFT00845016200.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  FOXG1 UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene FOXG1 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN G1 UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN G1 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/TrEMBL
  Formin homology 2 domain (FH2 domain) UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A8C0LIA5 ENTREZGENE
  A0A8C0N3H8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PIQ5 ENTREZGENE
UniProt Secondary A0A8P0PIQ5 UniProtKB/TrEMBL