QTL: Rf38 (Renal function QTL 38) Rattus norvegicus Symbol: Rf38 Name: Renal function QTL 38 Also known as: Specialized Center of Research QTL 6; SCOR6 Trait: Renal function Subtrait: renal vascular resistance Method: 10-week old male rats were given a high-salt diet (8% NaCl), fitted with a femoral catheter, and housed in metabolic cages, allowing multiple traits related to blood pressure and cardiac function to be measured in a conscious unrestrained way LOD Score: 2.876 P Value: Not Available Variance: Not Available Position Map Chr Position Strand Source RGSC Genome Assembly v5.0 6 44,763,886 - 85,163,291   RGD RGSC Genome Assembly v3.4 6 32,764,436 - 75,049,644   RGD Genome Assembly 3.1 6 32,767,389 - 75,052,770   RGD Cross Type: Not Available Strains Crossed: BN/SsNHsd SS/JrHsdMcwi  Model Launch Genome Browser (GBrowse) Annotation    (Toggle Detail/Summary View) Disease Annotations Term Qualifier Evidence With Reference Notes Source Original Reference(s) Hypertension   IAGP   70849   RGD   Phenotype Annotations Term Qualifier Evidence With Reference Notes Source Original Reference(s) abnormal renal vascular resistance   IAGP   70849   RGD   kidney failure   IAGP   70849   RGD   Disease Annotations Hypertension  (IAGP) Phenotype Annotations abnormal renal vascular resistance  (IAGP) kidney failure  (IAGP) References - curated 1. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6. RGD Disease Portals Rf38 has been annotated in the following RGD Disease Portals. Cardiovascular Diseases Cardiovascular Phenotypes Diabetes Diseases Obesity Diseases Related QTLs Related QTL Description Reference Rf37 maps to same region RGD:70849 Region Genes in Region (RGSC Genome Assembly v3.4) The following Genes overlap with this region.    Full Report CSV TAB Printer Gviewer RGD ID Symbol Name Chr Start Stop Species 1311807 Osr1 odd-skipped related 1 (Drosophila) 6 33074410 33076769 Rat 2320070 LOC100361495 hypothetical LOC100361495 6 33268777 33305891 Rat 1309705 Nt5c1b 5'-nucleotidase, cytosolic IB 6 33849953 33867624 Rat 1565196 Rdh14 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) 6 33867711 33872853 Rat 2319917 LOC100361550 hypothetical LOC100361550 6 34504737 34508839 Rat 621527 Kcns3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 6 34534529 34593882 Rat 1587516 Msgn1 mesogenin 1 6 34642722 34643362 Rat 1559792 Gen1 Gen endonuclease homolog 1 (Drosophila) 6 34679618 34709812 Rat 1311214 Smc6 structural maintenance of chromosomes 6 6 34710177 34763158 Rat 3966 Vsnl1 visinin-like 1 6 34770053 34895220 Rat 1583700 LOC503019 similar to mitochondrial ribosomal protein S10 6 34913881 34914475 Rat 2322652 Rad51ap2 RAD51 associated protein 2 6 34917939 34924620 Rat 1586345 LOC689955 similar to heat shock protein 8 6 35425476 35427479 Rat 1586335 LOC689965 similar to ribosomal protein L27 6 35642657 35643064 Rat 1586329 LOC689971 similar to histone aminotransferase 1 6 35654154 35668329 Rat 1305961 Fam49a family with sequence similarity 49, member A 6 35830497 35936574 Rat 2319696 LOC100361677 40S ribosomal protein SA-like 6 36088480 36088968 Rat 2322296 LOC100360357 cytochrome c oxidase, subunit VIIc-like 6 36115365 36115556 Rat 1565679 RGD1565679 similar to 60S ribosomal protein L27a (L29) 6 36289910 36290344 Rat 1585165 LOC690047 similar to ribosomal protein S15a 6 36325386 36325793 Rat 1584995 Mycn v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 6 36508262 36514071 Rat 1583776 LOC366577 similar to 40S ribosomal protein S16 6 36521558 36522054 Rat 619903 Ddx1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 6 36794602 36825473 Rat 1585140 LOC690073 similar to neuroblastoma-amplified protein 6 36846485 37159552 Rat 1587589 LOC688591 similar to Ferritin light chain 1 (Ferritin L subunit 1) 6 36945464 36946458 Rat 1585125 LOC690088 similar to mortality factor 4 like 1 6 37420157 37421124 Rat 1305779 Fam84a family with sequence similarity 84, member A 6 37782015 37786488 Rat 1563464 RGD1563464 similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) 6 37822995 37824002 Rat 2319366 LOC100361808 F-box and WD repeat domain containing 2-like 6 38088784 38090139 Rat 1584006 LOC690166 similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) 6 38743778 38746043 Rat 1583858 LOC298902 similar to thymine DNA glycosylase isoform 2 6 39023526 39025932 Rat 2319126 LOC100361954 nuclease sensitive element binding protein 1 6 39115882 39129720 Rat 1564451 Trib2 tribbles homolog 2 (Drosophila) 6 39474243 39496718 Rat 1582901 LOC690207 hypothetical protein LOC690207 6 39496813 39498390 Rat 2321713 LOC100360644 ribosomal protein L11-like 6 39851134 39851661 Rat 2318971 LOC100362009 hypothetical protein LOC100362009 6 39926601 39932467 Rat 1590888 LOC313976 similar to 60S ribosomal protein L7a 6 40181383 40189392 Rat 1307646 Lpin1 lipin 1 6 40253664 40297195 Rat 1564091 RGD1564091 similar to Kiaa0575 6 40356449 40406966 Rat 631412 E2f6 E2F transcription factor 6 6 40494286 40534152 Rat 3590 Rock2 Rho-associated coiled-coil containing protein kinase 2 6 40581247 40672854 Rat 1306818 Pqlc3 PQ loop repeat containing 3 6 40676562 40688138 Rat 1582838 LOC690276 hypothetical protein LOC690276 6 40692672 40698799 Rat 631414 Kcnf1 potassium voltage-gated channel, subfamily F, member 1 6 40910390 40913068 Rat 1359447 Nol10 nucleolar protein 10 6 41121421 41202780 Rat 1561890 RGD1561890 similar to craniofacial development protein 1 6 41234312 41235199 Rat 1597342 LOC690346 hypothetical protein LOC690346 6 41249717 41250654 Rat 1583775 LOC366581 similar to 60S ribosomal protein L29 (P23) 6 41286088 41287342 Rat 3227 Odc1 ornithine decarboxylase 1 6 41309211 41315796 Rat 1597320 LOC690371 similar to prothymosin alpha 6 41402061 41402453 Rat 1563157 RGD1563157 similar to 60S ribosomal protein L35 6 41402973 41403344 Rat 1597304 LOC690389 hypothetical protein LOC690389 6 41425045 41425389 Rat 708375 Hpcal1 hippocalcin-like 1 6 41458062 41576771 Rat 1305263 Asap2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 6 41664580 41828032 Rat 1307810 Itgb1bp1 integrin beta 1 binding protein 1 6 41830110 41844514 Rat 1305767 Cpsf3 cleavage and polyadenylation specific factor 3, 73kDa 6 41844971 41873619 Rat 727866 Iah1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 6 41875020 41882237 Rat 620404 Adam17 ADAM metallopeptidase domain 17 6 41882432 41930755 Rat 3979 Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 6 41945769 41976123 Rat 1596074 LOC690434 similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) 6 42053351 42053971 Rat 1596058 Taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B 6 42127301 42204465 Rat 2318542 LOC100362243 RNA-binding protein 34-like 6 42160987 42163545 Rat 1305735 Grhl1 grainyhead-like 1 (Drosophila) 6 42217279 42260621 Rat 2318501 LOC100362284 small nuclear ribonucleoprotein E 6 42272871 42275507 Rat 1306646 Klf11 Kruppel-like factor 11 6 42296221 42307925 Rat 1596023 Cys1 cystin 1 6 42311213 42328045 Rat 1598310 Rrm2 ribonucleotide reductase M2 6 42350541 42356748 Rat 1559671 RGD1559671 similar to M2 ribonucleotide reductase 6 42357656 42358000 Rat 1305798 Mboat2 membrane bound O-acyltransferase domain containing 2 6 42486112 42608004 Rat 619949 Kidins220 kinase D-interacting substrate 220 6 42649878 42740157 Rat 2859 Id2 inhibitor of DNA binding 2 6 42781476 42783307 Rat 2318357 LOC100362328 NADH dehydrogenase-like 6 42976726 42977066 Rat 1583774 LOC366583 similar to D-3-phosphoglycerate dehydrogenase (3-PGDH) 6 43789684 43791092 Rat 1561737 Rnf144a ring finger protein 144A 6 43957013 44073940 Rat 620495 Rsad2 radical S-adenosyl methionine domain containing 2 6 44100775 44113910 Rat 1305881 Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial 6 44128544 44139346 Rat 2318155 LOC100362433 glutathione peroxidase 8 6 44202294 44292107 Rat 2318102 LOC100362486 small nuclear ribonucleoprotein D3 6 45059313 45059658 Rat 69351 Sox11 SRY (sex determining region Y)-box 11 6 45141366 45143387 Rat 2324519 LOC100362535 ubiquitin-conjugating enzyme E2E 1 6 45259525 45260169 Rat 1593389 LOC690684 similar to cAMP-dependent protein kinase inhibitor gamma 6 45350029 45350244 Rat 1592258 LOC690705 similar to CG13731-PA 6 46227127 46227984 Rat 1592238 LOC690726 similar to 60S ribosomal protein L21 6 46279475 46279955 Rat 1592231 LOC690733 similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38) 6 46303046 46303906 Rat 1564913 Akr1b1-ps1 aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 1 6 46325639 46332300 Rat 1559651 Dcdc2c doublecortin domain containing 2C 6 46349333 46420004 Rat 621804 Allc allantoicase 6 46421144 46456709 Rat 1309678 Colec11 collectin sub-family member 11 6 46466449 46504760 Rat 61907 Rps7 ribosomal protein S7 6 46511961 46516825 Rat 1309012 Rnaseh1 ribonuclease H1 6 46528591 46537960 Rat 727828 Adi1 acireductone dioxygenase 1 6 46552589 46559551 Rat 1566054 Trappc12 trafficking protein particle complex 12 6 46567200 46632324 Rat 1305817 Tssc1 tumor suppressing subtransferable candidate 1 6 46633907 46747548 Rat 1592181 LOC690788 hypothetical protein LOC690788 6 47007468 47024183 Rat 620550 Myt1l myelin transcription factor 1-like 6 47435167 47828030 Rat 1591017 LOC690814 hypothetical protein LOC690814 6 47508511 47529588 Rat 1560694 Pxdn peroxidasin homolog (Drosophila) 6 47878710 47914112 Rat 2321072 LOC100360988 PE responsive protein c64-like 6 47913580 47914069 Rat 1596952 LOC678732 similar to ribosomal protein L36 6 47934143 47934334 Rat 3900 Tpo thyroid peroxidase 6 47954848 48025740 Rat 1311276 Sntg2 syntrophin, gamma 2 6 48059246 48263991 Rat 1596936 LOC678748 similar to peroxiredoxin 1 6 48329332 48333149 Rat 1359389 Tmem18 transmembrane protein 18 6 48467314 48473046 Rat 1587150 LOC679533 hypothetical protein LOC679533 6 48576343 48577794 Rat 1587117 Fam150b family with sequence similarity 150, member B 6 48772245 48781628 Rat 2020 Acp1 acid phosphatase 1, soluble 6 48784243 48798868 Rat 1306440 Sh3yl1 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) 6 48799328 48842807 Rat 1585983 LOC679605 similar to HIRA interacting protein 3 6 48853144 48855647 Rat 1564713 Fam110c family with sequence similarity 110, member C 6 48916302 48922559 Rat 2320683 LOC100361178 laminin, beta 4-like 6 48975556 49091570 Rat 2320542 LOC100361221 small subunit of serine palmitoyltransferase A 6 49092342 49092549 Rat 1306311 Lamb1 laminin, beta 1 6 49115671 49183374 Rat 735073 Dld dihydrolipoamide dehydrogenase 6 49185188 49205894 Rat 620623 Slc26a3 solute carrier family 26, member 3 6 49305008 49346008 Rat 1310703 Cbll1 Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1 6 49352961 49366947 Rat 1584826 LOC679715 similar to ribosomal protein L13 6 49374317 49374496 Rat 3293 Slc26a4 solute carrier family 26, member 4 6 49389212 49427000 Rat 1359431 Bcap29 B-cell receptor-associated protein 29 6 49464362 49504424 Rat 1311445 Dus4l dihydrouridine synthase 4-like (S. cerevisiae) 6 49509843 49524168 Rat 1563296 Cog5 component of oligomeric golgi complex 5 6 49523386 50200662 Rat 1310848 Gpr22 G protein-coupled receptor 22 6 49654472 49661340 Rat 620444 Hbp1 HMG-box transcription factor 1 6 50201281 50227095 Rat 1584762 LOC679780 similar to ribosomal protein L18a 6 50215559 50216097 Rat 3394 Prkar2b protein kinase, cAMP dependent regulatory, type II beta 6 50234979 50325298 Rat 1306468 Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 6 50441892 50476931 Rat 2320310 LOC100361355 hypothetical LOC100361355 6 50537653 50622764 Rat 1560812 Ccdc71l coiled-coil domain containing 71-like 6 50622965 50623768 Rat 1598116 LOC679954 hypothetical protein LOC679954 6 50660780 50675053 Rat 2321896 LOC100360561 Nxt2 protein-like 6 50698419 50698842 Rat 1598099 LOC679971 similar to carbonic anhydrase 13 6 51100025 51100807 Rat 631365 Nampt nicotinamide phosphoribosyltransferase 6 51129160 51166514 Rat 1596865 LOC680022 similar to meteorin, glial cell differentiation regulator-like 6 51259001 51260087 Rat 2320069 LOC100361496 hypothetical LOC100361496 6 51260105 51260604 Rat 2319916 LOC100361551 hypothetical LOC100361551 6 51261938 51263086 Rat 1359569 Sypl1 synaptophysin-like 1 6 51284538 51303975 Rat 1307943 Efcab10 EF-hand calcium binding domain 10 6 51741044 51747963 Rat 2319872 LOC100361597 hypothetical LOC100361597 6 51767906 51789913 Rat 1307824 Twistnb TWIST neighbor 6 51789847 51807076 Rat 1595497 LOC680126 hypothetical protein LOC680126 6 51849530 51849853 Rat 1595482 LOC680142 similar to translocase of outer mitochondrial membrane 70 homolog A 6 51872506 51874331 Rat 1595449 LOC680175 similar to 40S ribosomal protein S20 6 52566315 52566674 Rat 1311812 Ferd3l Fer3-like (Drosophila) 6 52576336 52577225 Rat 621455 Twist1 twist basic helix-loop-helix transcription factor 1 6 52605869 52607863 Rat 1594139 LOC680293 similar to developmental pluripotency associated 4 isoform 1 6 52676820 52677563 Rat 1310748 Hdac9 histone deacetylase 9 6 53066308 53114402 Rat 1306328 Prps1l1 phosphoribosyl pyrophosphate synthetase 1-like 1 6 53652048 53653738 Rat 1309778 Snx13 sorting nexin 13 6 53727055 53827207 Rat 1592964 LOC680365 similar to tumor rejection antigen gp96 6 53981123 53986186 Rat 2074 Ahr aryl hydrocarbon receptor 6 54205104 54240268 Rat 1598279 LOC366601 similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) 6 54326241 54327245 Rat 1565406 Agr3 anterior gradient 3 homolog (Xenopus laevis) 6 54629032 54652276 Rat 1583857 LOC298960 similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) 6 54667729 54668721 Rat 1304606 Agr2 anterior gradient 2 homolog (Xenopus laevis) 6 54695633 54716858 Rat 1311788 Tspan13 tetraspanin 13 6 54726558 54753312 Rat 621507 Bzw2 basic leucine zipper and W2 domains 2 6 54817673 54881310 Rat 1306017 Ankmy2 ankyrin repeat and MYND domain containing 2 6 54881681 54923743 Rat 1560395 Lrrc72 leucine rich repeat containing 72 6 54929069 55004458 Rat 2324295 LOC100362663 ribosomal protein S26-like 6 55010472 55010819 Rat 628877 Sostdc1 sclerostin domain containing 1 6 55066277 55070451 Rat 1359368 Ispd isoprenoid synthase domain containing 6 55139155 55419630 Rat 1590627 LOC680533 similar to histone deacetylase 1 6 55446649 55447065 Rat 2324155 LOC100362703 heterogeneous nuclear ribonucleoprotein A1-like 6 55733519 55734606 Rat 3079 Meox2 mesenchyme homeobox 2 6 55895760 55957066 Rat 2319740 LOC100361632 hypothetical LOC100361632 6 56004842 56005720 Rat 1312038 Agmo alkylglycerol monooxygenase 6 56042873 56380045 Rat 1563613 RGD1563613 similar to 40S ribosomal protein S25 6 56592837 56593211 Rat 2488 Dgkb diacylglycerol kinase, beta 6 56715327 57479656 Rat 1592986 LOC680343 similar to cytoplasmic beta-actin 6 56795806 56796937 Rat 1589430 LOC680646 similar to 40S ribosomal protein S2 6 57592920 57593297 Rat 2323883 LOC100362896 prostatic binding protein-like 6 57622736 57623577 Rat 1312007 Etv1 ets variant 1 6 57674561 57766401 Rat 2323695 LOC100362999 hsc70-interacting protein-like 6 58534683 58536116 Rat 1588265 LOC680701 similar to suppression of tumorigenicity 13 6 58540587 58541691 Rat 1305611 Smarce1l SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1-like 6 58607123 58608300 Rat 1560073 RGD1560073 similar to ribosomal protein S10 6 58773471 58773968 Rat 1588231 LOC680735 similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) 6 58901684 58902232 Rat 1565306 RGD1565306 similar to 60S ribosomal protein L29 (P23) 6 59001796 59002266 Rat 1588211 LOC680755 similar to B-cell receptor-associated protein 37 6 59101348 59110089 Rat 2152 Arl4a ADP-ribosylation factor-like 4A 6 59212599 59214609 Rat 735034 Scin scinderin 6 59237930 59357001 Rat 1587073 Lsmem1 leucine-rich single-pass membrane protein 1 6 59413670 59419484 Rat 1561724 RGD1561724 similar to mKIAA0716 protein 6 59903426 60136543 Rat 2323665 Immp2l IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 6 60311939 61230323 Rat 2323872 LOC100359421 histone H3.3B-like 6 60350996 60352686 Rat 71066 Lrrn3 leucine rich repeat neuronal 3 6 60745501 60776261 Rat 1585816 LOC680973 hypothetical protein LOC680973 6 61433411 61490721 Rat 1584717 LOC681026 similar to 60S ribosomal protein L9 6 62272638 62273208 Rat 1589745 Ndufa10l1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 1 6 62280832 62282265 Rat 1584700 LOC681044 hypothetical protein LOC681044 6 62436782 62569906 Rat 1584692 LOC681052 hypothetical protein LOC681052 6 62797105 62944312 Rat 3070 Dnajb9 DnaJ (Hsp40) homolog, subfamily B, member 9 6 63583033 63587247 Rat 2323197 LOC100363346 hypothetical LOC100363346 6 63587451 63609535 Rat 1583553 LOC681138 similar to DnaJ (Hsp40) homolog, subfamily B, member 6 6 63610146 63610962 Rat 1311444 Pnpla8 patatin-like phospholipase domain containing 8 6 63644462 63676544 Rat 3209 Nrcam neuronal cell adhesion molecule 6 63717460 64015522 Rat 1598017 LOC681255 similar to G patch domain containing 4 protein isoform 2 6 64127309 64131831 Rat 2258 Calm2 calmodulin 2 6 64161641 64162751 Rat 2322989 LOC100363456 hypothetical LOC100363456 6 64166443 64167265 Rat 1598278 LOC366611 similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) 6 64172069 64173352 Rat 1583855 LOC298990 hypothetical LOC298990 6 64191387 64192377 Rat 1306117 Stxbp6 syntaxin binding protein 6 (amisyn) 6 64249917 64490471 Rat 1596779 LOC681310 similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) 6 64866705 64867764 Rat 2323818 LOC100359475 hypothetical LOC100359475 6 64867019 64867529 Rat 621345 Nova1 neuro-oncological ventral antigen 1 6 66193472 66320240 Rat 1584393 LOC684966 similar to splicing factor 3b, subunit 4 6 67406520 67419224 Rat 1598277 LOC366613 similar to Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (SRP1-alpha) (RAG cohort protein 1) (Pendulin) (Pore targeting complex 58 kDa subunit) (PTAC58) (Importin alpha P1) 6 67922756 67924316 Rat 2325096 Bpnt1-ps1 3'(2'), 5'-bisphosphate nucleotidase 1, pseudogene 1 6 67968595 67969045 Rat 1334065 Olr873-ps olfactory receptor pseudogene 873 6 68731478 68731931 Rat 1583294 LOC685003 similar to Leydig cell tumor 10 kDa protein 6 68859138 68860048 Rat 2323500 LOC100359740 D-3-phosphoglycerate dehydrogenase-like 6 69184172 69185416 Rat 1559629 RGD1559629 similar to H+ ATP synthase 6 69197171 69197569 Rat 2619 Foxg1 forkhead box G1 6 69217672 69220482 Rat 1598276 LOC366615 similar to glyceraldehyde-3-phosphate dehydrogenase 6 69969977 69970976 Rat 620964 Prkd1 protein kinase D1 6 70364135 70682006 Rat 1597711 LOC685172 hypothetical protein LOC685172 6 71094642 71163118 Rat 1310263 G2e3 G2/M-phase specific E3 ubiquitin protein ligase 6 71421049 71451405 Rat 619828 Scfd1 sec1 family domain containing 1 6 71453366 71532347 Rat 1587060 LOC680823 similar to Ubiquitin-conjugating enzyme E2 I (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO-1-conjugating enzyme) (Ubiquitin-conjugating enzyme UbcE2A) 6 71462193 71462666 Rat 2323296 LOC100359846 hypothetical LOC100359846 6 71595929 71596892 Rat 2323141 LOC100359903 hypothetical LOC100359903 6 71600098 71604806 Rat 2323096 LOC100359949 hypothetical LOC100359949 6 71620159 71622124 Rat 1308536 Coch coagulation factor C homolog, cochlin (Limulus polyphemus) 6 71692946 71697056 Rat 621827 Strn3 striatin, calmodulin binding protein 3 6 71708959 71795287 Rat 1311990 Ap4s1 adaptor-related protein complex 4, sigma 1 subunit 6 71794606 71835640 Rat 1561653 Hectd1 HECT domain containing E3 ubiquitin protein ligase 1 6 71842842 71930042 Rat 1561116 Heatr5a HEAT repeat containing 5A 6 72024109 72112681 Rat 1309138 Dtd2 D-tyrosyl-tRNA deacylase 2 (putative) 6 72153048 72158654 Rat 1306830 Gpr33 G protein-coupled receptor 33 6 72176407 72177412 Rat 1307232 Nubpl nucleotide binding protein-like 6 72264459 72306567 Rat 1595110 LOC685338 similar to longevity assurance homolog 5 6 72446765 72525025 Rat 1595092 LOC685356 hypothetical protein LOC685356 6 72566628 72580975 Rat 1308507 Arhgap5 Rho GTPase activating protein 5 6 72685231 72693052 Rat 1593803 LOC685454 hypothetical protein LOC685454 6 72767156 72783672 Rat 69412 Akap6 A kinase (PRKA) anchor protein 6 6 73010779 73354520 Rat 1307181 Npas3 neuronal PAS domain protein 3 6 74192110 74209762 Rat 71019 Egln3 EGL nine homolog 3 (C. elegans) 6 74451038 74476506 Rat 2322683 LOC100360166 expressed sequence AU019823-like 6 74614885 74637094 Rat 1559672 RGD1559672 similar to Translocase of inner mitochondrial membrane 23 homolog 6 74669286 74669915 Rat 2323006 Rps10l1 ribosomal protein S10-like 1 6 74838974 74839471 Rat 1559724 RGD1559724 similar to 40S ribosomal protein S19 6 74880361 74880840 Rat 1565821 Sptssa serine palmitoyltransferase, small subunit A 6 74962387 74973800 Rat 1309624 Eapp E2F-associated phosphoprotein 6 74985403 75012635 Rat 1584650 LOC681094 similar to centrin 4 6 74996144 74997108 Rat Markers in Region (RGSC Genome Assembly v3.4) The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer RGD ID Symbol Expected Size Chr Start Stop Species Match 34138 D6Mgh8 125 6 32764436 32764561 Rat region 34138 D6Mgh8 125 6 32764437 32764561 Rat region 44055 D6Got30 118 6 32801164 32801282 Rat region 44055 D6Got30 118 6 32801165 32801282 Rat region 5036799 AU049243 219 6 32829894 32830112 Rat region 5036442 Osr1 149 6 33076159 33076307 Rat region 60532 D6Got29 253 6 33409681 33409934 Rat region 60532 D6Got29 253 6 33409682 33409934 Rat region 5025810 RH129764 204 6 33872610 33872813 Rat region 5043420 RH130015 217 6 33872613 33872829 Rat region 5499565 AI327407 1394 6 34036583 34037976 Rat region 44058 D6Got26 275 6 34039173 34039448 Rat region 44058 D6Got26 275 6 34039174 34039448 Rat region 33828 D6Mit9 186 6 34039303 34039461 Rat region 33828 D6Mit9 186 6 34039304 34039461 Rat region 44054 D6Got31 137 6 34250008 34250145 Rat region 44054 D6Got31 137 6 34250009 34250145 Rat region 5032463 D12Ertd137e 203 6 34534832 34535034 Rat region 5500105 UniSTS:236805 238 6 34536081 34536318 Rat region 5080830 RH141807 197 6 34642565 34642761 Rat region 5055303 RH143724 170 6 34709307 34709476 Rat region 5058842 BF387143 196 6 34711280 34711475 Rat region 5054451 RH143232 139 6 34759091 34759229 Rat region 5087024 AA850777 194 6 34762817 34763010 Rat region 5077594 RH139846 182 6 34764242 34764423 Rat region 5069406 AU046520 427 6 34767355 34767569 Rat region 5078508 RH140383 201 6 34770208 34770408 Rat region 5500689 RH80046 188 6 34770346 34770533 Rat region 5077070 RH139543 213 6 34770372 34770584 Rat region 35531 D6Rat38 149 6 34770930 34771081 Rat region 35531 D6Rat38 149 6 34770931 34771081 Rat region 11488 D6Arb7 217 6 34770962 34771181 Rat region 11488 D6Arb7 217 6 34770963 34771181 Rat region 60535 D6Got35 132 6 34806092 34806224 Rat region 60535 D6Got35 132 6 34806093 34806224 Rat region 42202 D6Arb5 160 6 34845300 34845460 Rat region 42202 D6Arb5 160 6 34845301 34845460 Rat region 35396 D6Rat35 170 6 35232849 35233017 Rat region 35396 D6Rat35 170 6 35232850 35233017 Rat region 5501786 MARC_12189-12190:1004712897:1 132 6 35667599 35667730 Rat region 5059832 BI285581 148 6 35668080 35668225 Rat region 5502331 RH124502 90 6 35668302 35668391 Rat region 35390 D6Rat36 140 6 35883625 35883996 Rat region 35390 D6Rat36 140 6 35883847 35883986 Rat region 42779 D6Rat228 245 6 35914889 35915131 Rat region 42779 D6Rat228 245 6 35914890 35915131 Rat region 5070508 AU022673 203 6 35939689 35939891 Rat region 5032981 RH137192 208 6 35942057 35942264 Rat region 41606 D6Rat144 167 6 36000818 36000985 Rat region 41606 D6Rat144 167 6 36000819 36000985 Rat region 44063 D6Got34 218 6 36163620 36163838 Rat region 44063 D6Got34 218 6 36163621 36163838 Rat region 37046 D6Rat52 121 6 36202769 36203086 Rat region 37046 D6Rat52 121 6 36202946 36203062 Rat region 5081547 AW433833 110 6 36399329 36399438 Rat region 44059 D6Got38 257 6 36410535 36410789 Rat region 44059 D6Got38 257 6 36410536 36410789 Rat region 44064 D6Got33 138 6 36410562 36410699 Rat region 36787 D6Rat37 167 6 36481546 36481713 Rat region 36787 D6Rat37 167 6 36481547 36481713 Rat region 5035552 MYCN 724 6 36508306 36509029 Rat region 7193124 MYCN 446 6 36513620 36514065 Rat region 5060374 AW531905 151 6 36516795 36516945 Rat region 67229 D6Arb21 242 6 36740330 36740572 Rat region 67229 D6Arb21 242 6 36740331 36740572 Rat region 5039754 RH127887 186 6 36794727 36794917 Rat region 5080980 RH141894 198 6 37021634 37021831 Rat region 5068388 AU047176 199 6 37454361 37454559 Rat region 5042750 RH129624 191 6 37631469 37631659 Rat region 39848 D6Rat143 158 6 37703985 37704138 Rat region 39848 D6Rat143 158 6 37703986 37704138 Rat region 60536 D6Got37 129 6 37720996 37721125 Rat region 60536 D6Got37 129 6 37720997 37721125 Rat region 5028937 RH142890 100 6 37781317 37781416 Rat region 5080860 RH141825 183 6 37782308 37782490 Rat region 42780 D6Rat208 235 6 38349822 38350042 Rat region 44061 D6Got39 247 6 38349825 38350072 Rat region 44061 D6Got39 247 6 38349826 38350072 Rat region 41574 D5Rat145 172 6 38604989 38605158 Rat region 60538 D6Got41 285 6 38795771 38796053 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63706322 Rat region 35036 D6Rat24 125 6 63794794 63795234 Rat region 35036 D6Rat24 125 6 63795021 63795142 Rat region 5063782 AW535153 156 6 63965892 63966047 Rat region 5081042 RH141931 207 6 64012382 64012588 Rat region 5051883 RH94713 180 6 64012530 64012709 Rat region 5078550 RH140409 235 6 64014091 64014325 Rat region 5056393 RH144352 142 6 64018497 64018638 Rat region 5501608 RH44636 0 6 64166656 64166778 Rat region 5027449 C85317 85 6 64247159 64247243 Rat region 5080400 RH141557 218 6 64250076 64250293 Rat region 5057942 BF386377 166 6 64367946 64368111 Rat region 44095 D6Got77 182 6 64604498 64604680 Rat region 44095 D6Got77 182 6 64604499 64604680 Rat region 5082839 BF390216 152 6 64827612 64827763 Rat region 40044 D6Rat154 148 6 64955447 64955579 Rat region 40044 D6Rat154 148 6 64955448 64955579 Rat region 5066876 AU048098 241 6 64979437 64979681 Rat region 42786 D6Rat169 202 6 65393587 65393789 Rat region 42786 D6Rat169 202 6 65393588 65393789 Rat region 5055223 RH143677 131 6 66009373 66009503 Rat region 44094 D6Got76 271 6 66116076 66116346 Rat region 44094 D6Got76 271 6 66116078 66116346 Rat region 5503538 NOVA1__6065 613 6 66196851 66197463 Rat region 5506409 Nova1 540 6 66199323 66199862 Rat region 67225 D6Arb15 128 6 66350382 66350509 Rat region 42784 D6Rat201 243 6 66799998 66800238 Rat region 42784 D6Rat201 243 6 66799998 66800238 Rat region 42325 D6Rat221 232 6 67709191 67709421 Rat region 42325 D6Rat221 232 6 67709192 67709421 Rat region 38608 D6Rat106 142 6 68036028 68036449 Rat region 38608 D6Rat106 142 6 68036230 68036371 Rat region 44096 D6Got80 196 6 68705756 68705950 Rat region 44096 D6Got80 196 6 68705757 68705952 Rat region 5074224 RH137893 229 6 69207568 69207796 Rat region 7193005 Foxg1 396 6 69219135 69219530 Rat region 5070420 Foxg1 1004 6 69219358 69220361 Rat region 5507199 UniSTS:225243 169 6 69219701 69219869 Rat region 7192194 Foxg1 455 6 69219722 69220176 Rat region 5028883 RH142688 188 6 69231644 69231831 Rat region 5062582 BF403446 188 6 69316054 69316241 Rat region 5501295 D11S2605 145 6 69508252 69508401 Rat region 42791 D6Rat198 103 6 69831514 69831601 Rat region 42791 D6Rat198 103 6 69831515 69831601 Rat region 5507147 UniSTS:224841 154 6 70363914 70364067 Rat region 5036454 Prkcm 206 6 70363966 70364171 Rat region 5085318 BQ209938 150 6 70366285 70366434 Rat region 44097 D6Got79 268 6 70674174 70674442 Rat region 44097 D6Got79 268 6 70674175 70674442 Rat region 44098 D6Got82 124 6 71031226 71031349 Rat region 44098 D6Got82 124 6 71031227 71031349 Rat region 44099 D6Got81 162 6 71228200 71228362 Rat region 44099 D6Got81 162 6 71228201 71228362 Rat region 5065568 BI303408 185 6 71451141 71451325 Rat region 5029341 RH144427 157 6 71516682 71516838 Rat region 5054369 RH143184 270 6 71691142 71691411 Rat region 5041570 RH128933 196 6 71706113 71706308 Rat region 5086879 AI228304 163 6 71729549 71729711 Rat region 41548 D6Rat130 160 6 71777628 71777778 Rat region 5030749 BE107927 156 6 71795967 71796122 Rat region 5033319 RH138400 154 6 71803688 71803841 Rat region 5083225 BI275482 197 6 71842700 71842896 Rat region 5077226 RH139635 203 6 71844358 71844560 Rat region 5053413 RH142634 107 6 71889508 71889614 Rat region 5070472 AI844876 139 6 71896825 71896963 Rat region 5047984 RH132642 201 6 72024151 72024351 Rat region 5034161 RH141600 184 6 72088714 72088897 Rat region 39340 D6Rat73 200 6 72151291 72151501 Rat region 39340 D6Rat73 200 6 72151292 72151501 Rat region 5040426 RH128276 220 6 72152596 72152815 Rat region 5502186 MARC_7649-7650:996688053:1 0 6 72305758 72305988 Rat region 42792 D6Rat199 223 6 72469819 72470030 Rat region 42792 D6Rat199 223 6 72469820 72470030 Rat region 625778 D6Got89 186 6 72640005 72640450 Rat region 625778 D6Got89 186 6 72640248 72640433 Rat region 5064694 BE108339 152 6 72718282 72718433 Rat region 5057680 BE101321 156 6 72736817 72736972 Rat region 44100 D6Got90 227 6 73001677 73001904 Rat region 44100 D6Got90 227 6 73001678 73001904 Rat region 5085950 BM384496 181 6 73031355 73031535 Rat region 5031698 AU047448 183 6 73033955 73034137 Rat region 5047758 RH132511 192 6 73035472 73035664 Rat region 44103 D6Got91 222 6 73057488 73057707 Rat region 44103 D6Got91 222 6 73057489 73057707 Rat region 1638211 D6Wox36 187 6 73354214 73354400 Rat region 5032623 RH134690 197 6 73355637 73355833 Rat region 5066000 BE116465 170 6 73356851 73357020 Rat region 44105 D6Got88 107 6 73435774 73435881 Rat region 44105 D6Got88 107 6 73435775 73435881 Rat region 34272 D6Mgh12 108 6 73460678 73460783 Rat region 34272 D6Mgh12 108 6 73460679 73460787 Rat region 5059928 BE103570 157 6 73603406 73603562 Rat region 5026278 RH131599 215 6 74209600 74209814 Rat region 5507307 fc03e11.x1 917 6 74228186 74229102 Rat region 5090827 AU049986 267 6 74237110 74237376 Rat region 5079998 RH141323 197 6 74326863 74327059 Rat region 5089041 AU048919 215 6 74340841 74341055 Rat region 44106 D6Got87 154 6 74360590 74360744 Rat region 44106 D6Got87 154 6 74360591 74360744 Rat region 36729 D6Rat23 139 6 74436856 74436995 Rat region 36729 D6Rat23 139 6 74436857 74436995 Rat region 5071314 RH135011 209 6 74451796 74452004 Rat region 5052841 RH142305 176 6 74452098 74452273 Rat region 1639973 D0Got229 128 6 74593345 74593474 Rat region 1627862 D0Got280 120 6 74626664 74626783 Rat region 5074134 RH137841 177 6 74996389 74996565 Rat region 5025686 RH129268 190 6 75019148 75019337 Rat region 11242 D6Arb17 389 6 75049255 75049643 Rat region 11241 D6Mit3 117 6 75049527 75049644 Rat region 11241 D6Mit3 117 6 75049528 75049644 Rat region Position Markers Flank 1: (D6Mgh8) Map Chr Position Strand Source Rat Cytogenetic Map 6     RGD RGSC Genome Assembly v5.0 6 44,763,886 - 44,764,010   UniSTS RGSC Genome Assembly v3.4 6 32,764,437 - 32,764,561   UniSTS RGSC Genome Assembly v3.4 6 32,764,436 - 32,764,561   RGD Rat Celera Assembly 6 31,515,490 - 31,515,616   UniSTS Genome Assembly 3.1 6 32,767,389 - 32,767,514   RGD RH 2.0 6 274.5   RGD SHRSP x BN 6 28.5599   RGD Peak: (D6Mgh11) Map Chr Position Strand Source Rat Cytogenetic Map 6     RGD RH 3.4 6 288.5   UniSTS RH 3.4 6 288.5   RGD RH 2.0 6 454.4   RGD Flank 2: (D6Mit3) Map Chr Position Strand Source RGSC Genome Assembly v5.0 6 85,163,175 - 85,163,291   UniSTS RGSC Genome Assembly v3.4 6 75,049,527 - 75,049,644   RGD RGSC Genome Assembly v3.4 6 75,049,528 - 75,049,644   UniSTS Rat Celera Assembly 6 71,073,450 - 71,073,566   UniSTS Genome Assembly 3.1 6 75,052,653 - 75,052,770   RGD RH 2.0 6 677.4   RGD QTLs in Region (RGSC Genome Assembly v3.4) The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer RGD ID Symbol Name LOD P Value Trait Sub Trait Chr Start Stop Species 738023 Alc17 Alcohol consumption QTL 17 3.1 .003 Consumption level alcohol preference 6 1 35786687 Rat 1549905 Stresp10 Stress response QTL 10 6.83 .0066 Stress response defensive burying - approach 6 1 35786687 Rat 1354616 Despr12 Despair related QTL 12 .0012 Activity level climbing level 6 1 35786687 Rat 2300176 Bmd51 Bone mineral density QTL 51 11.7 .0001 Bone mineral density 6 1 35786687 Rat 2300190 Bmd52 Bone mineral density QTL 52 11.2 .0001 Bone mineral density 6 1 35786687 Rat 2293709 Bss23 Bone structure and strength QTL 23 5.18 .0001 Bone structure 6 1 42401411 Rat 2293650 Bss31 Bone structure and strength QTL 31 5.05 .0001 Bone structure 6 1 42401411 Rat 2293656 Bss28 Bone structure and strength QTL 28 6.79 .0001 Bone structure 6 1 42401411 Rat 738024 Sach5 Saccharine consumption QTL 5 3.9 .00039 Consumption level saccharin preference 6 1 43326782 Rat 2292589 Emca10 Estrogen-induced mammary cancer QTL 10 .048 Mammary tumor resistance 6 1301952 46301952 Rat 1354664 Slep2 Serum leptin concentration QTL 2 4.49 Hormone level leptin 6 1301952 74436995 Rat 1576309 Emca7 Estrogen-induced mammary cancer QTL 7 4 Mammary tumor susceptibility estradiol-induced 6 2802670 111967837 Rat 70196 BpQTLcluster7 Blood pressure QTL cluster 7 6.82 Blood pressure intra-arterial 6 3158498 75049527 Rat 1578665 Bss16 Bone structure and strength QTL 16 4.4 Bone structure femoral neck trabecular area 6 6265856 75462111 Rat 1578668 Bmd14 Bone mineral density QTL 14 3.8 Bone mineral density femoral neck total vBMD 6 6265856 75462111 Rat 4145119 Mcs25 Mammary carcinoma susceptibility QTL 25 .0001 Mammary tumor susceptibility 6 7161389 115238799 Rat 2301972 Bp325 Blood pressure QTL 325 4.8 Blood pressure 6 7680593 75049644 Rat 1300128 Rf16 Renal function QTL 16 3.89 Renal function salt-loaded renal blood flow 6 13286615 35233017 Rat 1300164 Rf15 Renal function QTL 15 Renal function salt-loaded renal blood flow 6 13286615 56714969 Rat 2293839 Kiddil2 Kidney dilation QTL 2 4.8 Renal pathology kidney dilation 6 20798926 84287337 Rat 2293841 Kiddil4 Kidney dilation QTL 4 4.4 Renal pathology kidney dilation 6 20798926 84287337 Rat 1331779 Rf38 Renal function QTL 38 2.876 Renal function renal vascular resistance 6 32764436 75049644 Rat 1641898 Colcr4 Colorectal carcinoma resistance QTL4 3.71 .0007 Colorectal carcinoma resistance 6 33021033 64955579 Rat 634318 Bw118 Body weight QTL 118 3.55 Body fat amount abdominal fat 6 34039461 59946628 Rat 6893340 Cm77 Cardiac mass QTL 77 .26 .57 Cardiac mass body weight adjusted 6 34039461 84287190 Rat 1300143 Rf14 Renal function QTL 14 2.92 Renal function salt-loaded renal blood flow 6 35232849 80102311 Rat 1354632 Scl29 Serum cholesterol level QTL 29 3.74 Lipid level cholesterol 6 35883625 74436995 Rat 70199 Coreg1 Compensatory renal growth QTL 1 11.8 Renal function compensatory growth 6 36481546 59946874 Rat 634307 Bp141 Blood pressure QTL 141 4 Blood pressure systolic 6 37446751 82446751 Rat 737827 Hcar11 Hepatocarcinoma resistance QTL 11 4.4 Liver tumor resistance nodule number 6 41300997 115238799 Rat 634330 Pia16 Pristane induced arthritis QTL 16 3.9 Joint/bone inflammation arthritis severity 6 47039212 108621490 Rat 4889848 Pur25 Proteinuria QTL 25 14 .003 Renal function urine protein level 6 58941174 93819252 Rat 1558641 Cm47 Cardiac mass QTL 47 2.9 .001 Cardiac mass body weight adjusted 6 59946874 108503674 Rat 6893332 Cm74 Cardiac mass QTL 74 .4 .64 Cardiac mass body weight adjusted 6 59946874 108503674 Rat 70176 Mcsm1 Mammary carcinoma susceptibility modifier QTL 1 Mammary tumor susceptibility modification 6 61787263 106787263 Rat 2293088 Iddm28 Insulin dependent diabetes mellitus QTL 28 4.97 Glucose level insulin-dependent 6 65393789 74436856 Rat 731173 Uae22 Urinary albumin excretion QTL 22 10.1 Renal function urine albumin level 6 68036028 123455207 Rat 2290393 Uae37 Urinary albumin excretion QTL 37 .0001 Renal function urine albumin level 6 68036028 123455207 Rat 1641904 Alcrsp4 Alcohol response QTL 4 Alcohol response loss of righting reflex 6 70874239 115874239 Rat 1331789 Rf37 Renal function QTL 37 3.224 Renal function renal vascular resistance 6 75049527 120074417 Rat 724536 Uae7 Urinary albumin excretion QTL 7 3.5 Renal function urine albumin level 6 75049527 136452267 Rat 1331799 Bp211 Blood pressure QTL 211 3.66407 Blood pressure time series calculation 6 75049527 136649854 Rat 2301964 Bp323 Blood pressure QTL 323 4.3 Blood pressure systolic 6 75049644 84287190 Rat Additional Information External Database Links Database Acc Id Source(s) Entrez Gene Rf38 RGD Curation Notes Note Type Note Reference qtl_general slope of regression; log dose of norepinephrine vs the renal vascular resistance corresponding to that dose for each of three doses (SCOR6) 70849 qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849

More on Rf38 Genome Browser QTL Registration RGD Object Information RGD ID: 1331779 Created: 2005-01-28 Species: Rattus norvegicus Last Modified: 2005-01-28 Status: ACTIVE