Wdr46 (WD repeat domain 46) - Rat Genome Database

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Gene: Wdr46 (WD repeat domain 46) Rattus norvegicus
Analyze
Symbol: Wdr46
Name: WD repeat domain 46
RGD ID: 2209
Description: Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human WDR46 (WD repeat domain 46); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Bing4; MGC94931; Unknown function; WD repeat-containing protein 46
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,939,721 - 4,947,619 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,939,732 - 4,947,741 (-)EnsemblGRCr8
mRatBN7.2204,937,845 - 4,945,796 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,937,847 - 4,946,535 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,661,367 - 5,669,100 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,023,112 - 5,030,845 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,503,899 - 5,511,638 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,447,860 - 5,455,632 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,447,860 - 5,455,632 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,506,472 - 7,514,244 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,089,611 - 5,097,383 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,522,088 - 6,529,834 (-)NCBICelera
RGSC_v3.1205,089,839 - 5,097,610 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibric acid  (EXP)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
flusilazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
hexaconazole  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
Nivalenol  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA,ISO)
small-subunit processome  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. TAPASIN, DAXX, RGL2, HKE2 and four new genes (BING 1, 3 to 5) form a dense cluster at the centromeric end of the MHC. Herberg JA, etal., J Mol Biol 1998 Apr 10;277(4):839-57.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification of a novel highly conserved gene in the centromeric part of the major histocompatibility complex. Walter L and Gunther E, Genomics 1998 Sep 15;52(3):298-304.
Additional References at PubMed
PMID:12477932   PMID:15060004   PMID:22658674   PMID:22681889   PMID:24270810  


Genomics

Comparative Map Data
Wdr46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,939,721 - 4,947,619 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,939,732 - 4,947,741 (-)EnsemblGRCr8
mRatBN7.2204,937,845 - 4,945,796 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,937,847 - 4,946,535 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,661,367 - 5,669,100 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,023,112 - 5,030,845 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,503,899 - 5,511,638 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,447,860 - 5,455,632 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,447,860 - 5,455,632 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,506,472 - 7,514,244 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,089,611 - 5,097,383 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,522,088 - 6,529,834 (-)NCBICelera
RGSC_v3.1205,089,839 - 5,097,610 (-)NCBI
Cytogenetic Map20p12NCBI
WDR46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,279,108 - 33,289,239 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,279,108 - 33,289,247 (-)Ensemblhg38GRCh38
GRCh37633,246,885 - 33,257,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,354,863 - 33,364,969 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34633,354,863 - 33,364,969NCBI
Celera634,801,238 - 34,811,662 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,988,537 - 32,998,938 (-)NCBIHuRef
CHM1_1633,248,816 - 33,259,244 (-)NCBICHM1_1
T2T-CHM13v2.0633,100,470 - 33,110,601 (-)NCBIT2T-CHM13v2.0
Wdr46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,159,608 - 34,168,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,159,634 - 34,168,671 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381733,940,634 - 33,949,695 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,940,660 - 33,949,697 (+)Ensemblmm10GRCm38
MGSCv371734,077,668 - 34,086,640 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361733,551,177 - 33,560,149 (+)NCBIMGSCv36mm8
Celera1736,693,635 - 36,702,594 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Wdr46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,840,791 - 1,848,172 (-)Ensembl
ChiLan1.0NW_0049554371,840,875 - 1,848,258 (-)NCBIChiLan1.0ChiLan1.0
WDR46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,756,943 - 47,767,149 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,628,607 - 43,638,816 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,851,335 - 32,861,806 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,965,528 - 33,975,898 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,965,528 - 33,975,898 (-)EnsemblpanPan2panpan1.1
WDR46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,721,262 - 2,729,365 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,720,658 - 2,729,394 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha122,802,170 - 2,810,395 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0123,052,429 - 3,060,890 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,052,450 - 3,060,598 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,719,901 - 2,728,119 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,801,391 - 2,809,605 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,876,085 - 2,884,317 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Wdr46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,373,210 - 38,383,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,577,243 - 25,586,931 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,577,115 - 25,587,057 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,645,130 - 29,653,579 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1729,645,128 - 29,653,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,148,893 - 34,157,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,787,932 - 38,797,940 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,788,275 - 38,799,858 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604433,114,052 - 33,124,178 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,532,771 - 23,541,975 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475423,532,579 - 23,542,109 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Wdr46
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1186,948,459 - 6,956,159 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Wdr46
167 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:48
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000000552
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7175096Tcs1T cell selection QTL 1T cell selection trait (VT:0004917)expression2047282825026446Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
BE104185  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,938,100 - 4,938,204 (+)MAPPERmRatBN7.2
Rnor_6.0205,448,116 - 5,448,219NCBIRnor6.0
Rnor_5.0207,506,728 - 7,506,831UniSTSRnor5.0
RGSC_v3.4205,089,867 - 5,089,970UniSTSRGSC3.4
Celera206,522,318 - 6,522,421UniSTS
RH 3.4 Map2056.74UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000552   ⟹   ENSRNOP00000000552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,939,732 - 4,947,741 (-)Ensembl
mRatBN7.2 Ensembl204,938,183 - 4,945,622 (-)Ensembl
Rnor_6.0 Ensembl205,447,860 - 5,455,632 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116906   ⟹   ENSRNOP00000085425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,937,847 - 4,946,535 (-)Ensembl
RefSeq Acc Id: NM_212491   ⟹   NP_997656
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,939,730 - 4,947,502 (-)NCBI
mRatBN7.2204,937,845 - 4,945,617 (-)NCBI
Rnor_6.0205,447,860 - 5,455,632 (-)NCBI
Rnor_5.0207,506,472 - 7,514,244 (-)NCBI
RGSC_v3.4205,089,611 - 5,097,383 (-)RGD
Celera206,522,088 - 6,529,834 (-)RGD
Sequence:
RefSeq Acc Id: XM_063279119   ⟹   XP_063135189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,939,721 - 4,947,619 (-)NCBI
Protein Sequences
Protein RefSeqs NP_997656 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135189 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85934 (Get FASTA)   NCBI Sequence Viewer  
  CAE83923 (Get FASTA)   NCBI Sequence Viewer  
  EDL96845 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000552
  ENSRNOP00000000552.8
RefSeq Acc Id: NP_997656   ⟸   NM_212491
- UniProtKB: A0A8J8XQ12 (UniProtKB/TrEMBL),   F7EQJ9 (UniProtKB/TrEMBL),   Q5U2N9 (UniProtKB/TrEMBL),   Q6MGC3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000552   ⟸   ENSRNOT00000000552
Ensembl Acc Id: ENSRNOP00000085425   ⟸   ENSRNOT00000116906
RefSeq Acc Id: XP_063135189   ⟸   XM_063279119
- Peptide Label: isoform X1
Protein Domains
BING4 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MGC3-F1-model_v2 AlphaFold Q6MGC3 1-609 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701412
Promoter ID:EPDNEW_R11935
Type:initiation region
Name:Wdr46_1
Description:WD repeat domain 46
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,455,649 - 5,455,709EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2209 AgrOrtholog
BioCyc Gene G2FUF-4518 BioCyc
Ensembl Genes ENSRNOG00000031171 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000552 ENTREZGENE
  ENSRNOT00000000552.9 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112671 IMAGE-MGC_LOAD
InterPro BING4_C UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR46/Utp7 UniProtKB/TrEMBL
KEGG Report rno:309628 UniProtKB/TrEMBL
MGC_CLONE MGC:94931 IMAGE-MGC_LOAD
NCBI Gene Wdr46 ENTREZGENE
PANTHER PTHR14085 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 46 UniProtKB/TrEMBL
Pfam BING4CT UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Wdr46 PhenoGen
RatGTEx ENSRNOG00000031171 RatGTEx
SMART BING4CT UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8J8XQ12 ENTREZGENE, UniProtKB/TrEMBL
  F7EQJ9 ENTREZGENE
  Q5U2N9 ENTREZGENE, UniProtKB/TrEMBL
  Q6MGC3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7EQJ9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-20 Wdr46  WD repeat domain 46  Bing4  Unknown function  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2002-06-10 Bing4  Unknown function      Symbol and Name status set to approved 70586 APPROVED