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Gene: Tmem71 (transmembrane protein 71) Rattus norvegicus

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Symbol:

Tmem71

Name:

transmembrane protein 71

RGD ID:

1593414

Description:

Predicted to be located in membrane. Orthologous to human TMEM71 (transmembrane protein 71); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC690657; LOC690657

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM71 (transmembrane protein 71)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Tmem71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem71 (transmembrane protein 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TMEM71 (transmembrane protein 71)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem71 (transmembrane protein 71)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-235o23.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-235o23.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem71	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	100,166,038 - 100,212,234 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	100,166,516 - 100,204,969 (-)	Ensembl				GRCr8
mRatBN7.2	7	98,276,975 - 98,323,161 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	98,276,975 - 98,315,858 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	100,038,839 - 100,076,499 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	102,240,497 - 102,278,159 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	102,159,855 - 102,197,507 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	107,264,235 - 107,392,808 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	107,262,929 - 107,392,972 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	107,207,598 - 107,213,563 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	7	107,306,269 - 107,331,585 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	103,883,566 - 103,931,188 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	94,830,680 - 94,868,380 (-)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congestive heart failure (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

acetamide (EXP)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cantharidin (ISO)

CGP 52608 (ISO)

choline (ISO)

clothianidin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dimethylarsinic acid (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

L-methionine (ISO)

metformin (EXP)

methapyrilene (ISO)

methotrexate (ISO)

methylarsonic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (EXP)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Tmem71
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	100,166,038 - 100,212,234 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	100,166,516 - 100,204,969 (-)	Ensembl				GRCr8
mRatBN7.2	7	98,276,975 - 98,323,161 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	98,276,975 - 98,315,858 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	100,038,839 - 100,076,499 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	102,240,497 - 102,278,159 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	102,159,855 - 102,197,507 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	107,264,235 - 107,392,808 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	107,262,929 - 107,392,972 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	107,207,598 - 107,213,563 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	7	107,306,269 - 107,331,585 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	103,883,566 - 103,931,188 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	94,830,680 - 94,868,380 (-)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI

TMEM71
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	132,705,839 - 132,775,999 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	132,685,007 - 132,760,712 (-)	Ensembl			hg38	GRCh38
GRCh37	8	133,718,085 - 133,788,245 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	133,791,376 - 133,842,010 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	129,896,999 - 129,948,734 (-)	NCBI		Celera
Cytogenetic Map	8	q24.22	NCBI
HuRef	8	129,040,662 - 129,091,279 (-)	NCBI		HuRef
CHM1_1	8	133,762,980 - 133,813,571 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	133,829,136 - 133,899,185 (-)	NCBI		T2T-CHM13v2.0

Tmem71
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	66,398,061 - 66,433,085 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	66,398,061 - 66,432,952 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	66,526,212 - 66,561,236 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	66,526,212 - 66,561,103 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	66,357,774 - 66,392,608 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	66,355,881 - 66,390,715 (-)	NCBI		MGSCv36	mm8
Celera	15	68,058,097 - 68,092,942 (-)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	29.28	NCBI

Tmem71
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955461	7,367,376 - 7,392,337 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM71
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	150,097,998 - 150,146,837 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	125,612,597 - 125,661,434 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	129,363,661 - 129,429,101 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	132,339,621 - 132,388,442 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	132,339,621 - 132,388,523 (-)	Ensembl			panPan2	panpan1.1

TMEM71
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	29,217,384 - 29,249,145 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	29,218,733 - 29,249,289 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	29,190,267 - 29,234,455 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	29,571,599 - 29,616,265 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	29,570,926 - 29,615,983 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	29,298,584 - 29,342,941 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	29,398,731 - 29,443,322 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	29,710,837 - 29,755,316 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	9,024,148 - 9,102,595 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	16,490,787 - 16,528,691 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	16,490,824 - 16,528,640 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM71
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	8,486,002 - 8,516,295 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	8,467,572 - 8,516,316 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	8,532,046 - 8,556,579 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM71
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	127,136,525 - 127,186,052 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	127,136,414 - 127,186,051 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	12,921,620 - 12,970,203 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem71
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624735	23,171,402 - 23,265,855 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmem71
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	240,644,520 - 240,677,971 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmem71
226 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	105
Count of miRNA genes:	90
Interacting mature miRNAs:	95
Transcripts:	ENSRNOT00000056793
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	92388565	119280177	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	71103011	106126789	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1331723	Bw25	Body weight QTL 25	3.348		body mass (VT:0001259)	body weight (CMO:0000012)	7	96700404	111672180	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	96700404	118618702	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH141213

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	98,277,764 - 98,277,974 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	107,263,719 - 107,263,928	NCBI	Rnor6.0
Rnor_5.0	7	107,207,082 - 107,207,291	UniSTS	Rnor5.0
RGSC_v3.4	7	103,883,050 - 103,883,259	UniSTS	RGSC3.4
Celera	7	94,830,189 - 94,830,398	UniSTS
RH 3.4 Map	7	679.3	UniSTS
Cytogenetic Map	7	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	150	91	90	59	92	59	6	356	192	11	126	81	89	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056793 ⟹ ENSRNOP00000053636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	107,273,419 - 107,391,184 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093352 ⟹ ENSRNOP00000076108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	100,166,516 - 100,204,969 (-)	Ensembl
mRatBN7.2 Ensembl	7	98,276,975 - 98,315,858 (-)	Ensembl
Rnor_6.0 Ensembl	7	107,262,929 - 107,385,528 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093425 ⟹ ENSRNOP00000076182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	107,391,145 - 107,392,972 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000122387 ⟹ ENSRNOP00000108153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	100,167,344 - 100,201,416 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160251 ⟹ ENSRNOP00000099204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	100,167,344 - 100,204,969 (-)	Ensembl

RefSeq Acc Id:

NM_001271215 ⟹ NP_001258144

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	100,167,344 - 100,204,969 (-)	NCBI
mRatBN7.2	7	98,278,281 - 98,315,910 (-)	NCBI
Rnor_6.0	7	107,264,235 - 107,392,808 (-)	NCBI
Rnor_5.0	7	107,207,598 - 107,213,563 (-)	NCBI
Rnor_5.0	7	107,306,269 - 107,331,585 (-)	NCBI
Celera	7	94,830,680 - 94,868,380 (-)	NCBI

Sequence:

show sequence

AGTAACTTCTCACCCGTTGACATTCTGATGGGATTTTTTTCAGCTGAAGAACGGCTTGGTCCAG
CTCTCTGCACTGCCAACCACAGGGAAGTTTCGCATTTCAGTAATCTGCCTGTCATTTATCAGTT
GGAAGAAGAGCCTTGGGACTCCCTGTGGAGGAATATAAAAAAAAATCTGTGAAGTTTGAACAAG
CGGCCTTCTCAAGATGTACCGAGTCCCGCAACTGATGTCGACACCAGTAGCAAATTCTTCCAGA
TCAGGAGGAGGACCTTCTGGAAAGTTGTCCCCCACACGCCTTTTCCCAAGCTTTACTTGTGACT
TCCTGGATGGAGAGCGTTCTTTTGAATGCTGCTCCATAGACCCCCTGACAGGCTCCTACTATAT
CTGCCGCAGAAGCCCCCGACTCCTAACCAATGGCTACTACATTTGGACTGAGGACAGTTTCCTC
TGTGACCCAGATGGCCACATCACACTGAATCCCTCTCACACCAGTGTGATGTACAAGGAGAACT
TAGTTAGAATATTTAGAAAGAAAAGGAGAACCCACCGTTCTCTTTCTTCAGTCTTGGACCCCCG
CGCCTCGAAGTCTTGGCTGCATGCAAGTATCTTTGGAGATGTTGGTTCACTCCCAAGTGAGGAT
CTCTGGCTGGAGGGAATCAGGAGCCTTGGAAGTGATCTAGACTGTTCTTCTCTGAGTGATGGCT
GGGAGTCTCAGAAGCCAATCACAGACACATCAGAATCCTCTTCTACTGGCCACCTCCTGCTTCA
GCCTCTCGGAGAAAGCTCCCAGAGTTCCTCTCTTCAGCTTCAGATGAAAACATCAGGACATTTC
GAAAAGAACATGTTGGTGCATTCAAGAGCTGGTTTGATGCATAAGCTCTCCTTTCAGGCAATCC
TCCTAGCCATGTGCTTAATCATTTCTGCATGCACAAGATGGTTTGTGGGAGGAGAATTAACCAG
CATCTTTACATGTGCTTTGCTGATCACAATAGCTTATGTTGTAAAGTCACTGTTTCTCAACCTT
GCCAGCTATTTCAAAGCCACCACCTGTGCTAGATTTGACAGCACTTGAGGAATACATGTGATGA
ATGTCCTCCATCTGGGAACAGTAATTTGGAGTCTTCTTGGAATCAACCACTTTATTGAAAGGGA
ATGGATAACAGAAAAGTTAATGTTGTTTTCTTTTAAAAAAAAAAACTCTAATCTCCACATGTAA
TAGTAATTGGTTCATGACAATAATATTAATTTTCCTTTCTTT

hide sequence

RefSeq Acc Id:

XM_039079927 ⟹ XP_038935855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	100,166,038 - 100,212,227 (-)	NCBI
mRatBN7.2	7	98,276,975 - 98,323,161 (-)	NCBI

RefSeq Acc Id:

XM_039079928 ⟹ XP_038935856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	100,166,038 - 100,212,229 (-)	NCBI
mRatBN7.2	7	98,276,975 - 98,323,161 (-)	NCBI

RefSeq Acc Id:

XR_010053047

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	100,172,668 - 100,212,234 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258144	(Get FASTA)	NCBI Sequence Viewer
	XP_038935855	(Get FASTA)	NCBI Sequence Viewer
	XP_038935856	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16159	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000076108.3
	ENSRNOP00000099204
	ENSRNOP00000099204.1
	ENSRNOP00000108153.1

RefSeq Acc Id:

NP_001258144 ⟸ NM_001271215

- UniProtKB:

A0A1W2Q623 (UniProtKB/TrEMBL), A6HRR3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYRVPQLMSTPVANSSRSGGGPSGKLSPTRLFPSFTCDFLDGERSFECCSIDPLTGSYYICRRS
PRLLTNGYYIWTEDSFLCDPDGHITLNPSHTSVMYKENLVRIFRKKRRTHRSLSSVLDPRASKS
WLHASIFGDVGSLPSEDLWLEGIRSLGSDLDCSSLSDGWESQKPITDTSESSSTGHLLLQPLGE
SSQSSSLQLQMKTSGHFEKNMLVHSRAGLMHKLSFQAILLAMCLIISACTRWFVGGELTSIFTC
ALLITIAYVVKSLFLNLASYFKATTCARFDST

hide sequence

Ensembl Acc Id:

ENSRNOP00000053636 ⟸ ENSRNOT00000056793

Ensembl Acc Id:

ENSRNOP00000076108 ⟸ ENSRNOT00000093352

Ensembl Acc Id:

ENSRNOP00000076182 ⟸ ENSRNOT00000093425

RefSeq Acc Id:	XP_038935855 ⟸ XM_039079927
- Peptide Label:	isoform X1
- UniProtKB:	A0A1W2Q623 (UniProtKB/TrEMBL), A6HRR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935856 ⟸ XM_039079928
- Peptide Label:	isoform X1
- UniProtKB:	A0A1W2Q623 (UniProtKB/TrEMBL), A6HRR3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099204 ⟸ ENSRNOT00000160251

Ensembl Acc Id:

ENSRNOP00000108153 ⟸ ENSRNOT00000122387

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMF7-F1-model_v2	AlphaFold	D3ZMF7	1-281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1593414	AgrOrtholog
BioCyc Gene	G2FUF-33124	BioCyc
Ensembl Genes	ENSRNOG00000025460	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000093352.3	UniProtKB/TrEMBL
	ENSRNOT00000122387.1	UniProtKB/TrEMBL
	ENSRNOT00000160251	ENTREZGENE
	ENSRNOT00000160251.1	UniProtKB/TrEMBL
InterPro	TMEM71	UniProtKB/TrEMBL
KEGG Report	rno:690657	UniProtKB/TrEMBL
NCBI Gene	690657	ENTREZGENE
PANTHER	PTHR35255	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 71	UniProtKB/TrEMBL
Pfam	TMEM71	UniProtKB/TrEMBL
PhenoGen	Tmem71	PhenoGen
RatGTEx	ENSRNOG00000025460	RatGTEx
UniProt	A0A1W2Q623	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LEJ5_RAT	UniProtKB/TrEMBL
	A0ABK0LTG1_RAT	UniProtKB/TrEMBL
	A6HRR3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Tmem71	transmembrane protein 71	LOC690657	hypothetical protein LOC690657	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690657	hypothetical protein LOC690657			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD