Tmem71 (transmembrane protein 71) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tmem71 (transmembrane protein 71) Ictidomys tridecemlineatus
Analyze
Symbol: Tmem71
Name: transmembrane protein 71
RGD ID: 12676755
Description: ASSOCIATED WITH benign neonatal seizures (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); congestive heart failure (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053039,024,148 - 9,102,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,490,787 - 16,528,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,490,824 - 16,528,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Tmem71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053039,024,148 - 9,102,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,490,787 - 16,528,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,490,824 - 16,528,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388132,705,839 - 132,775,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8132,685,007 - 132,760,712 (-)EnsemblGRCh38hg38GRCh38
GRCh378133,718,085 - 133,788,245 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368133,791,376 - 133,842,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera8129,896,999 - 129,948,734 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,040,662 - 129,091,279 (-)NCBIHuRef
CHM1_18133,762,980 - 133,813,571 (-)NCBICHM1_1
T2T-CHM13v2.08133,829,136 - 133,899,185 (-)NCBIT2T-CHM13v2.0
Tmem71
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,398,061 - 66,433,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,398,061 - 66,432,952 (-)EnsemblGRCm39 Ensembl
GRCm381566,526,212 - 66,561,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,526,212 - 66,561,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,357,774 - 66,392,608 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,355,881 - 66,390,715 (-)NCBIMGSCv36mm8
Celera1568,058,097 - 68,092,942 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1529.28NCBI
Tmem71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,166,038 - 100,212,234 (-)NCBIGRCr8
mRatBN7.2798,276,975 - 98,323,161 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,276,975 - 98,315,858 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,038,839 - 100,076,499 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,240,497 - 102,278,159 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,159,855 - 102,197,507 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,264,235 - 107,392,808 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,262,929 - 107,392,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,306,269 - 107,331,585 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,207,598 - 107,213,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,883,566 - 103,931,188 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,830,680 - 94,868,380 (-)NCBICelera
Cytogenetic Map7q33NCBI
Tmem71
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554617,367,376 - 7,392,337 (-)NCBIChiLan1.0ChiLan1.0
TMEM71
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27150,097,998 - 150,146,837 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18125,612,597 - 125,661,434 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,363,661 - 129,429,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,339,621 - 132,388,442 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,339,621 - 132,388,523 (-)Ensemblpanpan1.1panPan2
TMEM71
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,217,384 - 29,249,145 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,218,733 - 29,249,289 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,190,267 - 29,234,455 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01329,571,599 - 29,616,265 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1329,570,926 - 29,615,983 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,298,584 - 29,342,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,398,731 - 29,443,322 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,710,837 - 29,755,316 (-)NCBIUU_Cfam_GSD_1.0
TMEM71
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,486,002 - 8,516,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,467,572 - 8,516,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,532,046 - 8,556,579 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM71
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,136,525 - 127,186,052 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,136,414 - 127,186,051 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603912,921,620 - 12,970,203 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem71
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473523,171,402 - 23,265,855 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021722339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040293644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000028764   ⟹   ENSSTOP00000020953
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647016,490,787 - 16,528,691 (+)Ensembl
RefSeq Acc Id: XM_021722339   ⟹   XP_021578014
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,829 - 9,102,595 (+)NCBI
SpeTri2.0NW_00493647016,490,824 - 16,528,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040293629   ⟹   XP_040149563
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,725 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293630   ⟹   XP_040149564
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,153 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293632   ⟹   XP_040149566
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,153 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293633   ⟹   XP_040149567
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,153 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293634   ⟹   XP_040149568
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,153 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293635   ⟹   XP_040149569
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,951 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293636   ⟹   XP_040149570
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,151 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293637   ⟹   XP_040149571
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,829 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293638   ⟹   XP_040149572
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,951 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293639   ⟹   XP_040149573
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,725 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293640   ⟹   XP_040149574
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,149 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293642   ⟹   XP_040149576
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,148 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293643   ⟹   XP_040149577
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,064,725 - 9,102,595 (+)NCBI
RefSeq Acc Id: XM_040293644   ⟹   XP_040149578
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053039,024,148 - 9,102,595 (+)NCBI
RefSeq Acc Id: XP_021578014   ⟸   XM_021722339
- Peptide Label: isoform X2
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149578   ⟸   XM_040293644
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040149576   ⟸   XM_040293642
- Peptide Label: isoform X6
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149574   ⟸   XM_040293640
- Peptide Label: isoform X5
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149570   ⟸   XM_040293636
- Peptide Label: isoform X3
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149566   ⟸   XM_040293632
- Peptide Label: isoform X2
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149567   ⟸   XM_040293633
- Peptide Label: isoform X2
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149568   ⟸   XM_040293634
- Peptide Label: isoform X2
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149564   ⟸   XM_040293630
- Peptide Label: isoform X2
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149563   ⟸   XM_040293629
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040149573   ⟸   XM_040293639
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040149577   ⟸   XM_040293643
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040149571   ⟸   XM_040293637
- Peptide Label: isoform X3
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149569   ⟸   XM_040293635
- Peptide Label: isoform X2
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149572   ⟸   XM_040293638
- Peptide Label: isoform X3
- UniProtKB: I3N9A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000020953   ⟸   ENSSTOT00000028764


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022474 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028764.2 UniProtKB/TrEMBL
InterPro TMEM71 UniProtKB/TrEMBL
NCBI Gene Tmem71 ENTREZGENE
PANTHER PTHR35255 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 71 UniProtKB/TrEMBL
Pfam TMEM71 UniProtKB/TrEMBL
UniProt I3N9A7 ENTREZGENE, UniProtKB/TrEMBL