Tmem71 (transmembrane protein 71) - Rat Genome Database

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Gene: Tmem71 (transmembrane protein 71) Mus musculus
Analyze
Symbol: Tmem71
Name: transmembrane protein 71
RGD ID: 1614962
MGI Page MGI
Description: Predicted to be located in mitochondrion. Orthologous to human TMEM71 (transmembrane protein 71).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AI661017; E430024D12
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,398,061 - 66,433,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,398,061 - 66,432,952 (-)EnsemblGRCm39 Ensembl
GRCm381566,526,212 - 66,561,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,526,212 - 66,561,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,357,774 - 66,392,608 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,355,881 - 66,390,715 (-)NCBIMGSCv36mm8
Celera1568,058,097 - 68,092,942 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1529.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18287559   PMID:21267068   PMID:21677750  
PMID:28378742  


Genomics

Comparative Map Data
Tmem71
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,398,061 - 66,433,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,398,061 - 66,432,952 (-)EnsemblGRCm39 Ensembl
GRCm381566,526,212 - 66,561,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,526,212 - 66,561,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,357,774 - 66,392,608 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,355,881 - 66,390,715 (-)NCBIMGSCv36mm8
Celera1568,058,097 - 68,092,942 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1529.28NCBI
TMEM71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388132,705,839 - 132,775,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8132,685,007 - 132,760,712 (-)EnsemblGRCh38hg38GRCh38
GRCh378133,718,085 - 133,788,245 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368133,791,376 - 133,842,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera8129,896,999 - 129,948,734 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,040,662 - 129,091,279 (-)NCBIHuRef
CHM1_18133,762,980 - 133,813,571 (-)NCBICHM1_1
T2T-CHM13v2.08133,829,136 - 133,899,185 (-)NCBIT2T-CHM13v2.0
Tmem71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,166,038 - 100,212,234 (-)NCBIGRCr8
mRatBN7.2798,276,975 - 98,323,161 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,276,975 - 98,315,858 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,038,839 - 100,076,499 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,240,497 - 102,278,159 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,159,855 - 102,197,507 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,264,235 - 107,392,808 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,262,929 - 107,392,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,306,269 - 107,331,585 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,207,598 - 107,213,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,883,566 - 103,931,188 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,830,680 - 94,868,380 (-)NCBICelera
Cytogenetic Map7q33NCBI
Tmem71
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554617,367,376 - 7,392,337 (-)NCBIChiLan1.0ChiLan1.0
TMEM71
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27150,097,998 - 150,146,837 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18125,612,597 - 125,661,434 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,363,661 - 129,429,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,339,621 - 132,388,442 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,339,621 - 132,388,523 (-)Ensemblpanpan1.1panPan2
TMEM71
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,217,384 - 29,249,145 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,218,733 - 29,249,289 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,190,267 - 29,234,455 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01329,571,599 - 29,616,265 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1329,570,926 - 29,615,983 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,298,584 - 29,342,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,398,731 - 29,443,322 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,710,837 - 29,755,316 (-)NCBIUU_Cfam_GSD_1.0
Tmem71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053039,024,148 - 9,102,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,490,787 - 16,528,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,490,824 - 16,528,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM71
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,486,002 - 8,516,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,467,572 - 8,516,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,532,046 - 8,556,579 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM71
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,136,525 - 127,186,052 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,136,414 - 127,186,051 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603912,921,620 - 12,970,203 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem71
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473523,171,402 - 23,265,855 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem71
1182 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:383
Count of miRNA genes:305
Interacting mature miRNAs:337
Transcripts:ENSMUST00000048372
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse

Markers in Region
AI661017  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381566,526,992 - 66,527,120UniSTSGRCm38
MGSCv371566,358,554 - 66,358,682UniSTSGRCm37
Celera1568,058,877 - 68,059,005UniSTS
Celera8116,186,978 - 116,187,106UniSTS
Cytogenetic Map15D2UniSTS
Whitehead/MRC_RH15570.83UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000048372   ⟹   ENSMUSP00000044493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,398,061 - 66,432,952 (-)Ensembl
GRCm38.p6 Ensembl1566,526,212 - 66,561,103 (-)Ensembl
RefSeq Acc Id: NM_172514   ⟹   NP_766102
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391566,398,061 - 66,432,895 (-)NCBI
GRCm381566,526,212 - 66,561,046 (-)NCBI
MGSCv371566,357,774 - 66,392,608 (-)RGD
Celera1568,058,097 - 68,092,942 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017316534   ⟹   XP_017172023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391566,404,668 - 66,433,085 (-)NCBI
GRCm381566,532,819 - 66,561,236 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766102   ⟸   NM_172514
- UniProtKB: Q8C2F7 (UniProtKB/Swiss-Prot),   Q149F5 (UniProtKB/Swiss-Prot),   A0A0R4J0I5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172023   ⟸   XM_017316534
- Peptide Label: isoform X1
- UniProtKB: Q8C2F7 (UniProtKB/Swiss-Prot),   Q149F5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000044493   ⟸   ENSMUST00000048372

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q149F5-F1-model_v2 AlphaFold Q149F5 1-287 view protein structure

Promoters
RGD ID:6826547
Promoter ID:MM_KWN:18643
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:NM_172514
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361566,392,224 - 66,392,724 (-)MPROMDB
RGD ID:8683874
Promoter ID:EPDNEW_M19968
Type:initiation region
Name:Tmem71_1
Description:Mus musculus transmembrane protein 71 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381566,561,046 - 66,561,106EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2146049 AgrOrtholog
Ensembl Genes ENSMUSG00000036944 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048372 ENTREZGENE
  ENSMUST00000048372.7 UniProtKB/TrEMBL
InterPro TMEM71 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:213068 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2146049 ENTREZGENE
NCBI Gene 213068 ENTREZGENE
PANTHER PTHR35255 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 71 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TMEM71 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem71 PhenoGen
UniProt A0A0R4J0I5 ENTREZGENE, UniProtKB/TrEMBL
  Q149F5 ENTREZGENE
  Q8C2F7 ENTREZGENE
  TMM71_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8C2F7 UniProtKB/Swiss-Prot