Cdc45 (cell division cycle 45) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cdc45 (cell division cycle 45) Rattus norvegicus
Analyze
Symbol: Cdc45
Name: cell division cycle 45
RGD ID: 1590928
Description: Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 7. Orthologous to human CDC45 (cell division cycle 45); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CDC45 cell division cycle 45-like; CDC45 cell division cycle 45-like (S. cerevisiae); CDC45-related protein; Cdc45l; cell division control protein 45 homolog; cell division cycle 45 homolog; cell division cycle 45 homolog (S. cerevisiae); cell division cycle 45 homolog (S. cerevisiae)-like; cell division cycle 45 homolog-like; LOC287961; similar to cell division cycle 45 homolog (S. cerevisiae)-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,689,702 - 95,714,980 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1195,689,919 - 95,714,981 (+)EnsemblGRCr8
mRatBN7.21182,185,427 - 82,210,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,185,473 - 82,210,619 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1190,917,527 - 90,942,110 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,578,747 - 83,603,331 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,632,015 - 82,656,850 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,328,785 - 86,354,099 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,329,012 - 86,358,453 (+)Ensemblrn6Rnor6.0
Rnor_5.01189,431,161 - 89,456,065 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1180,966,334 - 80,990,943 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2'-Methylenebis(4-methyl-6-tert-butylphenol)  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-fluorouracil  (ISO)
5-formyltetrahydrofolic acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite ion  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
auraptene  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol AF  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cryptolepine  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
deguelin  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
etoposide  (ISO)
fenvalerate  (EXP)
furan  (EXP)
genistein  (ISO)
geraniol  (ISO)
glyphosate  (ISO)
GSK-J4  (ISO)
GW 3965  (ISO)
GW 4064  (ISO)
inulin  (ISO)
Lasiocarpine  (ISO)
lead diacetate  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methylformamide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
PhIP  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
silver(1+) nitrate  (ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
triclosan  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
ciliary basal body  (IEA,ISO)
CMG complex  (IEA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21383955  


Genomics

Comparative Map Data
Cdc45
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,689,702 - 95,714,980 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1195,689,919 - 95,714,981 (+)EnsemblGRCr8
mRatBN7.21182,185,427 - 82,210,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,185,473 - 82,210,619 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1190,917,527 - 90,942,110 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,578,747 - 83,603,331 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,632,015 - 82,656,850 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,328,785 - 86,354,099 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,329,012 - 86,358,453 (+)Ensemblrn6Rnor6.0
Rnor_5.01189,431,161 - 89,456,065 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1180,966,334 - 80,990,943 (+)NCBICelera
Cytogenetic Map11q23NCBI
CDC45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,479,466 - 19,520,612 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,479,457 - 19,520,612 (+)Ensemblhg38GRCh38
GRCh372219,466,989 - 19,508,135 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,847,416 - 17,888,135 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342217,841,969 - 17,882,688NCBI
Celera223,319,674 - 3,360,395 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,088,162 - 3,128,966 (+)NCBIHuRef
CHM1_12219,466,920 - 19,507,702 (+)NCBICHM1_1
T2T-CHM13v2.02219,856,299 - 19,897,453 (+)NCBIT2T-CHM13v2.0
Cdc45
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,599,202 - 18,632,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,599,197 - 18,630,737 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381618,780,447 - 18,811,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,780,447 - 18,811,987 (-)Ensemblmm10GRCm38
MGSCv371618,780,540 - 18,812,065 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361618,694,015 - 18,725,535 (-)NCBIMGSCv36mm8
Celera1619,354,501 - 19,386,029 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.63NCBI
Cdc45
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,514,731 - 18,547,805 (-)Ensembl
ChiLan1.0NW_00495544218,513,398 - 18,548,317 (-)NCBIChiLan1.0ChiLan1.0
CDC45
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,104,120 - 29,145,481 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,651,826 - 31,693,203 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,239,040 - 2,279,807 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,913,729 - 17,955,195 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,913,729 - 17,955,195 (+)EnsemblpanPan2panpan1.1
CDC45
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,707,523 - 29,738,599 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,707,564 - 29,739,252 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2629,662,567 - 29,693,731 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02631,108,959 - 31,140,135 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,109,000 - 31,139,844 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,156,284 - 29,187,449 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,782,002 - 28,813,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,867,112 - 29,899,768 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdc45
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,301,628 - 139,333,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,420,191 - 3,452,436 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,420,110 - 3,452,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC45
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,133,408 - 51,158,606 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11451,133,111 - 51,158,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,750,436 - 54,775,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC45
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,232,610 - 6,275,743 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,231,591 - 6,275,294 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666085658,030 - 701,069 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc45
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747132,835 - 161,553 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624747132,731 - 161,590 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdc45
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v144,049,378 - 4,074,361 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:21
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000072027
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
D11Rat54  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81195,701,092 - 95,701,219 (+)Marker Load Pipeline
mRatBN7.21182,196,740 - 82,196,868 (+)MAPPERmRatBN7.2
Rnor_6.01186,340,109 - 86,340,236NCBIRnor6.0
Rnor_5.01189,442,075 - 89,442,202UniSTSRnor5.0
Celera1180,977,248 - 80,977,375UniSTS
RH 3.4 Map11697.9RGD
RH 3.4 Map11697.9UniSTS
Cytogenetic Map11p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 160 91 90 59 86 59 6 346 185 11 139 78 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000072027   ⟹   ENSRNOP00000066206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,211,475 - 82,214,992 (-)Ensembl
Rnor_6.0 Ensembl1186,329,012 - 86,358,453 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106544   ⟹   ENSRNOP00000092824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1195,689,919 - 95,714,981 (+)Ensembl
mRatBN7.2 Ensembl1182,185,473 - 82,210,619 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111618   ⟹   ENSRNOP00000093233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1195,689,919 - 95,711,323 (+)Ensembl
mRatBN7.2 Ensembl1182,185,473 - 82,210,619 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113191   ⟹   ENSRNOP00000095248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1195,689,919 - 95,714,981 (+)Ensembl
mRatBN7.2 Ensembl1182,185,473 - 82,210,619 (+)Ensembl
RefSeq Acc Id: NM_001105866   ⟹   NP_001099336
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81195,690,178 - 95,714,979 (+)NCBI
mRatBN7.21182,185,827 - 82,210,629 (+)NCBI
Rnor_6.01186,329,195 - 86,354,099 (+)NCBI
Rnor_5.01189,431,161 - 89,456,065 (+)NCBI
Celera1180,966,334 - 80,990,943 (+)RGD
Sequence:
RefSeq Acc Id: XM_063270326   ⟹   XP_063126396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81195,689,702 - 95,714,980 (+)NCBI
RefSeq Acc Id: XR_005490996
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81195,689,778 - 95,710,879 (+)NCBI
mRatBN7.21182,185,427 - 82,206,529 (+)NCBI
RefSeq Acc Id: XR_005490997
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81195,689,778 - 95,708,968 (+)NCBI
mRatBN7.21182,185,427 - 82,204,616 (+)NCBI
RefSeq Acc Id: XR_005490998
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81195,689,778 - 95,706,525 (+)NCBI
mRatBN7.21182,185,427 - 82,202,168 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099336 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126396 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61946 (Get FASTA)   NCBI Sequence Viewer  
  EDL77959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092824
  ENSRNOP00000092824.2
  ENSRNOP00000093233.2
  ENSRNOP00000095248.1
RefSeq Acc Id: NP_001099336   ⟸   NM_001105866
- UniProtKB: B1WBZ4 (UniProtKB/TrEMBL),   A6JSE8 (UniProtKB/TrEMBL),   A0A8I6AH40 (UniProtKB/TrEMBL),   A0A8I6AEM5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066206   ⟸   ENSRNOT00000072027
Ensembl Acc Id: ENSRNOP00000095248   ⟸   ENSRNOT00000113191
Ensembl Acc Id: ENSRNOP00000093233   ⟸   ENSRNOT00000111618
Ensembl Acc Id: ENSRNOP00000092824   ⟸   ENSRNOT00000106544
RefSeq Acc Id: XP_063126396   ⟸   XM_063270326
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AEM5 (UniProtKB/TrEMBL),   A6JSE8 (UniProtKB/TrEMBL),   B1WBZ4 (UniProtKB/TrEMBL),   A0A8I6AH40 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBZ4-F1-model_v2 AlphaFold B1WBZ4 1-570 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590928 AgrOrtholog
BioCyc Gene G2FUF-20672 BioCyc
Ensembl Genes ENSRNOG00000050071 Ensembl
  ENSRNOG00000070046 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106544 ENTREZGENE
  ENSRNOT00000106544.2 UniProtKB/TrEMBL
  ENSRNOT00000111618.2 UniProtKB/TrEMBL
  ENSRNOT00000113191.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9025372 IMAGE-MGC_LOAD
InterPro CDC45-like UniProtKB/TrEMBL
KEGG Report rno:287961 UniProtKB/TrEMBL
MGC_CLONE MGC:187739 IMAGE-MGC_LOAD
NCBI Gene 287961 ENTREZGENE
PANTHER CDC45_like UniProtKB/TrEMBL
  CELL DIVISION CONTROL PROTEIN 45 HOMOLOG UniProtKB/TrEMBL
Pfam CDC45 UniProtKB/TrEMBL
PhenoGen Cdc45 PhenoGen
RatGTEx ENSRNOG00000050071 RatGTEx
  ENSRNOG00000070046 RatGTEx
UniProt A0A8I6AEM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AH40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AN42_RAT UniProtKB/TrEMBL
  A0ABZ3NNK4_RAT UniProtKB/TrEMBL
  A6JSE8 ENTREZGENE
  B1WBZ4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6JSE8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-23 Cdc45  cell division cycle 45  Cdc45  cell division cycle 45 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-29 Cdc45  cell division cycle 45 homolog (S. cerevisiae)  Cdc45l  CDC45 cell division cycle 45-like (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-26 Cdc45l  CDC45 cell division cycle 45-like (S. cerevisiae)  Cdc45l  cell division cycle 45 homolog (S. cerevisiae)-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Cdc45l  cell division cycle 45 homolog (S. cerevisiae)-like  LOC287961  similar to cell division cycle 45 homolog (S. cerevisiae)-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC287961  similar to cell division cycle 45 homolog (S. cerevisiae)-like      Symbol and Name status set to provisional 70820 PROVISIONAL